Miyakogusa Predicted Gene

Lj6g3v0856590.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0856590.1 tr|A9RTR3|A9RTR3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_70439
,47.27,0.0000002,E set domains,Immunoglobulin E-set; CBM_48,Glycoside
hydrolase, family 13, N-terminal; 1,4-ALPHA-GLU,CUFF.58399.1
         (226 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20440.1 | Symbols: EMB2729, BE1 | Alpha amylase family prote...   328   2e-90
AT3G20440.3 | Symbols: EMB2729 | Alpha amylase family protein | ...   328   2e-90
AT3G20440.2 | Symbols: EMB2729, BE1 | Alpha amylase family prote...   328   2e-90
AT2G36390.1 | Symbols: SBE2.1, BE3 | starch branching enzyme 2.1...    48   4e-06

>AT3G20440.1 | Symbols: EMB2729, BE1 | Alpha amylase family protein
           | chr3:7123603-7130364 REVERSE LENGTH=869
          Length = 869

 Score =  328 bits (841), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 156/222 (70%), Positives = 179/222 (80%), Gaps = 8/222 (3%)

Query: 1   MNLKEMASGFELLGMHRHPEHRVDYMEWAPGARYCAIIGDINGWSPTENCAREHYFGHDD 60
            + ++ ASGFELLGMHRH EHRVD+M+W PG+RY AIIGD NGWSPTEN ARE  FGHDD
Sbjct: 108 FDFRDFASGFELLGMHRHMEHRVDFMDWGPGSRYGAIIGDFNGWSPTENAAREGLFGHDD 167

Query: 61  FGYWFIILQDKLREGEKPDKLYFQQYNYVDDYDKGDSGVTIEEIFKKMNDKYWQPGEDRY 120
           +GYWFIIL+DKLREGE+PD+LYFQQYNYVDDYDKGDSGV+ EEIF+K ND+YW+PGEDR+
Sbjct: 168 YGYWFIILEDKLREGEEPDELYFQQYNYVDDYDKGDSGVSAEEIFQKANDEYWEPGEDRF 227

Query: 121 LKNRFEGPVKLYEEIFGPNGPQTLEELGDIPDAETRYKEWAAKHG---PSRYAVID---- 173
           +KNRFE P KLYE++FGPN PQTLEELGDIPDAETRYK+W  +H    PS     D    
Sbjct: 228 IKNRFEVPAKLYEQMFGPNSPQTLEELGDIPDAETRYKQWKEEHKDDPPSNLPPCDIIDK 287

Query: 174 -SGKEYDVFNVRVDPGWHERVRALEPPIAYWLETRKGRKAWL 214
             GK YD+FNV   P W ++    EPPI YWLETRKGRKAWL
Sbjct: 288 GQGKPYDIFNVVTSPEWTKKFYEKEPPIPYWLETRKGRKAWL 329


>AT3G20440.3 | Symbols: EMB2729 | Alpha amylase family protein |
           chr3:7123603-7130364 REVERSE LENGTH=897
          Length = 897

 Score =  328 bits (841), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 156/222 (70%), Positives = 179/222 (80%), Gaps = 8/222 (3%)

Query: 1   MNLKEMASGFELLGMHRHPEHRVDYMEWAPGARYCAIIGDINGWSPTENCAREHYFGHDD 60
            + ++ ASGFELLGMHRH EHRVD+M+W PG+RY AIIGD NGWSPTEN ARE  FGHDD
Sbjct: 108 FDFRDFASGFELLGMHRHMEHRVDFMDWGPGSRYGAIIGDFNGWSPTENAAREGLFGHDD 167

Query: 61  FGYWFIILQDKLREGEKPDKLYFQQYNYVDDYDKGDSGVTIEEIFKKMNDKYWQPGEDRY 120
           +GYWFIIL+DKLREGE+PD+LYFQQYNYVDDYDKGDSGV+ EEIF+K ND+YW+PGEDR+
Sbjct: 168 YGYWFIILEDKLREGEEPDELYFQQYNYVDDYDKGDSGVSAEEIFQKANDEYWEPGEDRF 227

Query: 121 LKNRFEGPVKLYEEIFGPNGPQTLEELGDIPDAETRYKEWAAKHG---PSRYAVID---- 173
           +KNRFE P KLYE++FGPN PQTLEELGDIPDAETRYK+W  +H    PS     D    
Sbjct: 228 IKNRFEVPAKLYEQMFGPNSPQTLEELGDIPDAETRYKQWKEEHKDDPPSNLPPCDIIDK 287

Query: 174 -SGKEYDVFNVRVDPGWHERVRALEPPIAYWLETRKGRKAWL 214
             GK YD+FNV   P W ++    EPPI YWLETRKGRKAWL
Sbjct: 288 GQGKPYDIFNVVTSPEWTKKFYEKEPPIPYWLETRKGRKAWL 329


>AT3G20440.2 | Symbols: EMB2729, BE1 | Alpha amylase family protein
           | chr3:7123603-7130364 REVERSE LENGTH=899
          Length = 899

 Score =  328 bits (841), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 156/222 (70%), Positives = 179/222 (80%), Gaps = 8/222 (3%)

Query: 1   MNLKEMASGFELLGMHRHPEHRVDYMEWAPGARYCAIIGDINGWSPTENCAREHYFGHDD 60
            + ++ ASGFELLGMHRH EHRVD+M+W PG+RY AIIGD NGWSPTEN ARE  FGHDD
Sbjct: 108 FDFRDFASGFELLGMHRHMEHRVDFMDWGPGSRYGAIIGDFNGWSPTENAAREGLFGHDD 167

Query: 61  FGYWFIILQDKLREGEKPDKLYFQQYNYVDDYDKGDSGVTIEEIFKKMNDKYWQPGEDRY 120
           +GYWFIIL+DKLREGE+PD+LYFQQYNYVDDYDKGDSGV+ EEIF+K ND+YW+PGEDR+
Sbjct: 168 YGYWFIILEDKLREGEEPDELYFQQYNYVDDYDKGDSGVSAEEIFQKANDEYWEPGEDRF 227

Query: 121 LKNRFEGPVKLYEEIFGPNGPQTLEELGDIPDAETRYKEWAAKHG---PSRYAVID---- 173
           +KNRFE P KLYE++FGPN PQTLEELGDIPDAETRYK+W  +H    PS     D    
Sbjct: 228 IKNRFEVPAKLYEQMFGPNSPQTLEELGDIPDAETRYKQWKEEHKDDPPSNLPPCDIIDK 287

Query: 174 -SGKEYDVFNVRVDPGWHERVRALEPPIAYWLETRKGRKAWL 214
             GK YD+FNV   P W ++    EPPI YWLETRKGRKAWL
Sbjct: 288 GQGKPYDIFNVVTSPEWTKKFYEKEPPIPYWLETRKGRKAWL 329


>AT2G36390.1 | Symbols: SBE2.1, BE3 | starch branching enzyme 2.1 |
           chr2:15264283-15269940 FORWARD LENGTH=858
          Length = 858

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 6/66 (9%)

Query: 3   LKEMASGFELLGMHRHPEHRVDYMEWAPGARYCAIIGDINGWSPTENCAREHYFGHDDFG 62
           L+  + G+E+ G  R     + Y EWAPGA+  ++IGD N W+     A+      +DFG
Sbjct: 195 LEAFSRGYEIFGFTRSATG-ITYREWAPGAKAASLIGDFNNWN-----AKSDVMARNDFG 248

Query: 63  YWFIIL 68
            W I L
Sbjct: 249 VWEIFL 254