Miyakogusa Predicted Gene

Lj6g3v0831440.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0831440.2 Non Chatacterized Hit- tr|I3MIC5|I3MIC5_SPETR
Uncharacterized protein (Fragment) OS=Spermophilus
tri,33.04,2e-18,ZF_C3H1,Zinc finger, CCCH-type; G_PATCH,G-patch
domain; G-patch,G-patch domain; seg,NULL; coiled-coi,CUFF.58390.2
         (495 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G24830.1 | Symbols:  | zinc finger (CCCH-type) family protein...   468   e-132

>AT2G24830.1 | Symbols:  | zinc finger (CCCH-type) family protein /
           D111/G-patch domain-containing protein |
           chr2:10576993-10579154 REVERSE LENGTH=497
          Length = 497

 Score =  468 bits (1204), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 261/483 (54%), Positives = 324/483 (67%), Gaps = 25/483 (5%)

Query: 27  AIDEALLSDPTNSELVAVHEELVQAIKDAEEGLLHLKRARLLQEVDSVLHNTNMFTEEEK 86
           +IDEALLSDP+N EL++VHEEL+ AIK+ EEGLLHLKRARLL+E D VL+  N       
Sbjct: 26  SIDEALLSDPSNPELLSVHEELLSAIKEVEEGLLHLKRARLLEEADIVLNGLNHDA---- 81

Query: 87  VEPLDPTDVEPEPLEEKSYSIGSKCRFRHKDGRWYNGQVVQLDNS-VAKISFLTPTSENM 145
              + P  +EPE  EEK    GSKCRFRH DGRWYNG+++  + S  AKISFLTPTSE+M
Sbjct: 82  --GVKPEHLEPEKTEEKKDLDGSKCRFRHTDGRWYNGRIIGFEGSDSAKISFLTPTSESM 139

Query: 146 LMCKFFLQHRCRFGANCRQSHGVDVQLSSLKRYVPTIWKPSLVGSSIWALSDAKTGIWRE 205
           ++CKFF+Q RCRFG++CR SHG+DV +SSLK Y  T WK  +VGS IWA+S +K  IWR+
Sbjct: 140 MICKFFMQQRCRFGSSCRSSHGLDVPISSLKNYEQTEWKQLMVGSKIWAVSGSKYDIWRK 199

Query: 206 AELELWDEKAGVGQVVFRDSGSSMKLCAEEIVLSEYAEVXXXXXXXXXXXXXXXXXXXXX 265
           AELE WD++  VG VVFRD  SS KL ++ + LSEYA++                     
Sbjct: 200 AELESWDDELQVGGVVFRDDKSSAKLGSDSLALSEYAQMTDDDGEEEEEEDEQQSASDSE 259

Query: 266 X-----------XGLGFLESTNLQKGIQTDTALFAKWENHTRGIASKMMANMGFREGMGL 314
                        G+GFLESTNL +G+QTDTALFAKWENHTRGIASKMMA+MG+REGMGL
Sbjct: 260 DSVSSDYDEGSPQGIGFLESTNLPRGVQTDTALFAKWENHTRGIASKMMASMGYREGMGL 319

Query: 315 GVTGQGMLDPIPVKVLPPKQSLDHALDS-RXXXXXXXXXXXXXXXXXXXXXXXXFAEANR 373
           GV+GQG+L+PI VKVLP K+SLD+AL+  R                        FAEA +
Sbjct: 320 GVSGQGILNPILVKVLPAKRSLDYALEHIRNGECKSEKQKKKRSRGGKRKRGKKFAEAAK 379

Query: 374 TAKEEEESAPDVFTLINNQL-AMHGEASNGGSMKKQQSKDSGEVKKVDRKVLVAYEDEVK 432
            AK+EEES PD+F+LIN Q+     E  +  S+K +Q+K       VDRK LV Y+DEV+
Sbjct: 380 AAKQEEESKPDLFSLINEQIFPTRHEKVHSESVKNRQNKGP-----VDRKALVEYQDEVR 434

Query: 433 GLKMRVAKLEQMVNANKKEKAVYEAAMRKLVETRKALAEAESVHASASNTVVGKEKEKRW 492
            LK+ + KLEQMVN NKK+  V EAA R+L E RKALA   +  A+ASN +V KE EK+W
Sbjct: 435 DLKLEMLKLEQMVNRNKKDLVVSEAATRRLKEVRKALASTLACQAAASNAIVSKENEKKW 494

Query: 493 LKF 495
           LKF
Sbjct: 495 LKF 497