Miyakogusa Predicted Gene
- Lj6g3v0820200.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0820200.1 Non Chatacterized Hit- tr|C6TJB4|C6TJB4_SOYBN
Putative uncharacterized protein OS=Glycine max PE=4
S,93.88,2e-18,SWIB,SWIB/MDM2 domain; SUBFAMILY NOT NAMED,NULL; BRG-1
ASSOCIATED FACTOR 60 (BAF60),NULL; SWIB/MDM2 ,CUFF.58365.1
(100 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G26810.2 | Symbols: | SWIB/MDM2 domain superfamily protein |... 183 2e-47
AT4G26810.1 | Symbols: | SWIB/MDM2 domain superfamily protein |... 183 2e-47
AT2G35605.1 | Symbols: | SWIB/MDM2 domain superfamily protein |... 74 2e-14
AT1G31760.1 | Symbols: | SWIB/MDM2 domain superfamily protein |... 70 3e-13
AT4G34290.1 | Symbols: | SWIB/MDM2 domain superfamily protein |... 67 2e-12
AT2G14880.1 | Symbols: | SWIB/MDM2 domain superfamily protein |... 65 1e-11
AT3G03590.1 | Symbols: | SWIB/MDM2 domain superfamily protein |... 60 3e-10
AT1G49520.1 | Symbols: | SWIB complex BAF60b domain-containing ... 54 3e-08
AT3G19080.1 | Symbols: | SWIB complex BAF60b domain-containing ... 50 2e-07
AT4G22360.1 | Symbols: | SWIB complex BAF60b domain-containing ... 50 2e-07
AT3G48600.1 | Symbols: | SWIB complex BAF60b domain-containing ... 47 3e-06
AT3G48600.2 | Symbols: | SWIB complex BAF60b domain-containing ... 47 4e-06
>AT4G26810.2 | Symbols: | SWIB/MDM2 domain superfamily protein |
chr4:13492247-13492649 REVERSE LENGTH=106
Length = 106
Score = 183 bits (464), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 90/100 (90%), Positives = 94/100 (94%)
Query: 1 MLPQRMKKAITDNPKKLANLIDLVNLPSTLRDFVGQSQISRLGCFMRVWSYIKTNNLQDP 60
MLPQR+KKAITDNPKKL NLIDLVNLPSTLR+FVGQSQISRLGCFMRVWSYIKTNNLQDP
Sbjct: 1 MLPQRLKKAITDNPKKLGNLIDLVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDP 60
Query: 61 NNKNVVNCDEKLKSILLGKPQVELAELPSLIKLHFPKESK 100
NKNVV CDEKLKSILLGK +VEL +LPSLIKLHFPKE K
Sbjct: 61 KNKNVVICDEKLKSILLGKQRVELVDLPSLIKLHFPKEQK 100
>AT4G26810.1 | Symbols: | SWIB/MDM2 domain superfamily protein |
chr4:13492247-13492649 REVERSE LENGTH=106
Length = 106
Score = 183 bits (464), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 90/100 (90%), Positives = 94/100 (94%)
Query: 1 MLPQRMKKAITDNPKKLANLIDLVNLPSTLRDFVGQSQISRLGCFMRVWSYIKTNNLQDP 60
MLPQR+KKAITDNPKKL NLIDLVNLPSTLR+FVGQSQISRLGCFMRVWSYIKTNNLQDP
Sbjct: 1 MLPQRLKKAITDNPKKLGNLIDLVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDP 60
Query: 61 NNKNVVNCDEKLKSILLGKPQVELAELPSLIKLHFPKESK 100
NKNVV CDEKLKSILLGK +VEL +LPSLIKLHFPKE K
Sbjct: 61 KNKNVVICDEKLKSILLGKQRVELVDLPSLIKLHFPKEQK 100
>AT2G35605.1 | Symbols: | SWIB/MDM2 domain superfamily protein |
chr2:14946161-14947027 FORWARD LENGTH=109
Length = 109
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 6 MKKAITDNPKKLA----NLIDLVNLPSTLRDFVGQSQISRLGCFMRVWSYIKTNNLQDPN 61
M KA + K ++ +V + L +F+G++++SR ++W YIK NNLQ+P
Sbjct: 12 MAKAASSTGAKTGRQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPV 71
Query: 62 NKNVVNCDEKLKSILLGKPQVELAELPSLIKLHFPKES 99
NK + CDE+LK+I GK V E+ L+ HFPK +
Sbjct: 72 NKREILCDEQLKTIFSGKDTVGFLEISKLLSQHFPKSA 109
>AT1G31760.1 | Symbols: | SWIB/MDM2 domain superfamily protein |
chr1:11372602-11373414 REVERSE LENGTH=112
Length = 112
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 45/68 (66%)
Query: 30 LRDFVGQSQISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDEKLKSILLGKPQVELAELPS 89
L F G+ +++R +VW Y+K +NLQ+P NK ++CD+KLK+I GK +V + E+
Sbjct: 43 LASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKLKTIFDGKDKVGITEIMK 102
Query: 90 LIKLHFPK 97
L+ HFPK
Sbjct: 103 LLSPHFPK 110
>AT4G34290.1 | Symbols: | SWIB/MDM2 domain superfamily protein |
chr4:16410883-16412122 FORWARD LENGTH=144
Length = 144
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 41/66 (62%)
Query: 30 LRDFVGQSQISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDEKLKSILLGKPQVELAELPS 89
++D VG +I R R+W+YIK ++LQDP NK + CDEKLK I GK +V E+
Sbjct: 78 MQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFLEIAK 137
Query: 90 LIKLHF 95
LI HF
Sbjct: 138 LIGPHF 143
>AT2G14880.1 | Symbols: | SWIB/MDM2 domain superfamily protein |
chr2:6393686-6394841 REVERSE LENGTH=141
Length = 141
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 41/66 (62%)
Query: 30 LRDFVGQSQISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDEKLKSILLGKPQVELAELPS 89
++D V +I+R R+W+YIK ++LQDP NK + CDEKLK I G+ +V E+
Sbjct: 75 MQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDRVGFLEIAK 134
Query: 90 LIKLHF 95
LI HF
Sbjct: 135 LIGPHF 140
>AT3G03590.1 | Symbols: | SWIB/MDM2 domain superfamily protein |
chr3:865341-866669 REVERSE LENGTH=143
Length = 143
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 30 LRDFVGQSQISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDEKLKSILLGKPQVELAELPS 89
L F+G + SR +W+YIK+++LQ+P +K + CDE LK I GK +V E+
Sbjct: 74 LAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEGKDKVGFLEISK 133
Query: 90 LIKLHFPKES 99
L+ HF K +
Sbjct: 134 LLSPHFVKTA 143
>AT1G49520.1 | Symbols: | SWIB complex BAF60b domain-containing
protein | chr1:18329736-18331691 FORWARD LENGTH=372
Length = 372
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%)
Query: 15 KKLANLIDLVNLPSTLRDFVGQSQISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDEKLKS 74
KK + +L L+ F G Q++R +W YIK NNLQDP++K + CDE L+S
Sbjct: 246 KKGGGFTKVCSLSPELQAFTGTPQLARTEVVKMLWKYIKENNLQDPSDKRTIICDESLRS 305
Query: 75 IL 76
+
Sbjct: 306 LF 307
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 15 KKLANLIDLVNLPSTLRDFVGQSQISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDEKLKS 74
K+ + L L F+G SQ++R ++W+YI+ ++LQDP N+ + CDE L S
Sbjct: 97 KRGGGFNKICQLSPQLEKFLGTSQLARTEVVKKMWAYIREHDLQDPTNRRNILCDESLHS 156
Query: 75 IL 76
+
Sbjct: 157 LF 158
>AT3G19080.1 | Symbols: | SWIB complex BAF60b domain-containing
protein | chr3:6596082-6598667 FORWARD LENGTH=462
Length = 462
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 15 KKLANLIDLVNLPSTLRDFVGQSQISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDEKLKS 74
K + +L L+ F G ++++R +W YIK NNLQDPN+K + CDE +S
Sbjct: 259 KGGGGFAKVCSLSPELQAFTGVTELARTEVVKLLWKYIKENNLQDPNDKRSIICDESFRS 318
Query: 75 IL 76
+
Sbjct: 319 LF 320
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 7/66 (10%)
Query: 35 GQSQISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDEKLKSILLGKPQVELAELPSLIKL- 93
G++ +SR R+W YI N+LQDP++K V CDEKLK + +V+ E S+ KL
Sbjct: 398 GENSLSRADVVKRLWEYINHNDLQDPSDKRRVICDEKLKELF----EVDSFEDTSVSKLL 453
Query: 94 --HFPK 97
HF K
Sbjct: 454 TNHFIK 459
>AT4G22360.1 | Symbols: | SWIB complex BAF60b domain-containing
protein | chr4:11807811-11809660 FORWARD LENGTH=385
Length = 385
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 24 VNLPSTLRDF--VGQSQISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDEKLKSILLGKPQ 81
V L L F G+++++ RVW YIK NNL+DP N + CDEKL+ LLG
Sbjct: 309 VTLSEPLGKFFGTGETEMADEEIIRRVWEYIKLNNLEDPVNPMAIQCDEKLRD-LLGCES 367
Query: 82 VELAELPSLIKLHFPKES 99
+ + +++ H K+S
Sbjct: 368 ISAVGINEMLRRHMYKQS 385
>AT3G48600.1 | Symbols: | SWIB complex BAF60b domain-containing
protein | chr3:18010289-18011363 REVERSE LENGTH=183
Length = 183
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 6 MKKAITDNPKKLAN------LIDLVNLPSTLRDFVGQSQISRLGCFMRVWSYIKTNNLQD 59
M KA+T+ A + + + +L FVGQS++S +V Y +NL +
Sbjct: 15 MAKAVTNATATGAGVDRRGGIHKIFPVSESLARFVGQSEVSFSTAMEKVEQYTDDHNLWN 74
Query: 60 PNNKNVVNCDEKLKSILLGKPQ-VELAELPSLIKLHFP 96
P N + CD+ LK+I G+ + V + E+ L+ HFP
Sbjct: 75 PENIEEILCDDNLKTIFDGQDKVVGVREMTELLLRHFP 112
>AT3G48600.2 | Symbols: | SWIB complex BAF60b domain-containing
protein | chr3:18010168-18011363 REVERSE LENGTH=228
Length = 228
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 6 MKKAITDNPKKLAN------LIDLVNLPSTLRDFVGQSQISRLGCFMRVWSYIKTNNLQD 59
M KA+T+ A + + + +L FVGQS++S +V Y +NL +
Sbjct: 15 MAKAVTNATATGAGVDRRGGIHKIFPVSESLARFVGQSEVSFSTAMEKVEQYTDDHNLWN 74
Query: 60 PNNKNVVNCDEKLKSILLGKPQ-VELAELPSLIKLHFP 96
P N + CD+ LK+I G+ + V + E+ L+ HFP
Sbjct: 75 PENIEEILCDDNLKTIFDGQDKVVGVREMTELLLRHFP 112
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 12/90 (13%)
Query: 22 DLVNLPSTLRDFVGQSQISRLGCFMRVWSYIKTNNLQDPN------------NKNVVNCD 69
D+V + L FVGQS+IS ++ Y + L D +K + CD
Sbjct: 136 DIVKVSEPLARFVGQSEISFDAALRKLLDYAFDHKLVDEGVTLLEFPWITKCSKWRIRCD 195
Query: 70 EKLKSILLGKPQVELAELPSLIKLHFPKES 99
+ LK+IL GK +V EL SL+ HFP S
Sbjct: 196 DTLKTILDGKDKVGNKELSSLLMQHFPDSS 225