Miyakogusa Predicted Gene

Lj6g3v0820170.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0820170.1 tr|Q9FLP2|Q9FLP2_ARATH At5g55210 OS=Arabidopsis
thaliana GN=At5g55210 PE=2 SV=1,38.86,4e-19,seg,NULL,CUFF.58362.1
         (174 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G22320.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    90   7e-19
AT4G22320.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    90   8e-19
AT5G55210.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    85   3e-17

>AT4G22320.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G55210.1); Has 8953 Blast hits to 5363 proteins
           in 542 species: Archae - 33; Bacteria - 806; Metazoa -
           2454; Fungi - 831; Plants - 279; Viruses - 151; Other
           Eukaryotes - 4399 (source: NCBI BLink). |
           chr4:11793129-11794596 REVERSE LENGTH=238
          Length = 238

 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 67/130 (51%), Gaps = 22/130 (16%)

Query: 1   MEAVGSTRLGRATSRYGAPAVFSGPVRKWKKKWIHVTPXXXXXXXXXXXXXXXXKP---- 56
           ME VG+ RLGR+++RYG   VF+GPVRKWKKKW+HV+P                      
Sbjct: 1   MEGVGA-RLGRSSTRYGPATVFTGPVRKWKKKWVHVSPSSKKDNNNSSSGSAAAAASVVN 59

Query: 57  ---------SSRLLLRRWTPITXXXXXXXXXXXXXDN--------VSDEPPKRKFRYTPI 99
                     S LLL +W P++             ++        V+++PP+R+F+Y PI
Sbjct: 60  GGSNSDGSNGSHLLLYKWAPLSQNGNGNEDGKSESNSPSEDTVATVAEDPPRRRFKYVPI 119

Query: 100 AVLEEQKKGV 109
           AVLEEQKK +
Sbjct: 120 AVLEEQKKEI 129


>AT4G22320.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; EXPRESSED IN: 24 plant
           structures; EXPRESSED DURING: 14 growth stages; BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT5G55210.1). | chr4:11793129-11794596 REVERSE
           LENGTH=237
          Length = 237

 Score = 89.7 bits (221), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 67/130 (51%), Gaps = 22/130 (16%)

Query: 1   MEAVGSTRLGRATSRYGAPAVFSGPVRKWKKKWIHVTPXXXXXXXXXXXXXXXXKP---- 56
           ME VG+ RLGR+++RYG   VF+GPVRKWKKKW+HV+P                      
Sbjct: 1   MEGVGA-RLGRSSTRYGPATVFTGPVRKWKKKWVHVSPSSKKDNNNSSSGSAAAAASVVN 59

Query: 57  ---------SSRLLLRRWTPITXXXXXXXXXXXXXDN--------VSDEPPKRKFRYTPI 99
                     S LLL +W P++             ++        V+++PP+R+F+Y PI
Sbjct: 60  GGSNSDGSNGSHLLLYKWAPLSQNGNGNEDGKSESNSPSEDTVATVAEDPPRRRFKYVPI 119

Query: 100 AVLEEQKKGV 109
           AVLEEQKK +
Sbjct: 120 AVLEEQKKEI 129


>AT5G55210.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
           growth stages; BEST Arabidopsis thaliana protein match
           is: unknown protein (TAIR:AT4G22320.1); Has 1807 Blast
           hits to 1807 proteins in 277 species: Archae - 0;
           Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
           Viruses - 0; Other Eukaryotes - 339 (source: NCBI
           BLink). | chr5:22396707-22397374 REVERSE LENGTH=168
          Length = 168

 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 88/175 (50%), Gaps = 16/175 (9%)

Query: 1   MEAVGSTRLGRATSRYGAPA---VFSGPVRKWKKKWIHVTPXXXXXXXXXXXXXXXXKPS 57
           ME VGS RL R +SRY  PA   VFSG VRKWKKKW+ V+                   +
Sbjct: 1   MEGVGS-RLSRTSSRYSGPAATAVFSGRVRKWKKKWVRVSTSSVGVFRASKSNGRNNSNN 59

Query: 58  S----RLLLRRWTPITXXXXXXXXXXXXXDNVSDEPPKRKFRYTPIAVLEEQKKGVEK-S 112
           S     LLL +WTP+T             +  ++E PKR+FRY PIA+LE ++K + K S
Sbjct: 60  SNSPHHLLLHKWTPLTSATVTASDANGSGE--TEESPKRRFRYAPIAMLEHREKVISKDS 117

Query: 113 EHEPTSESDKLTAKQINATQEVHGKLNMNEISEESKDSNMSKLDLGFDLQGNNGE 167
           E E T E D     +    + V   +N+ + S+++K++    L+LG  L     E
Sbjct: 118 EIEETEEFD----TESPLPKAVELDMNLTD-SDQTKEAKTGNLNLGLCLNSEGTE 167