Miyakogusa Predicted Gene

Lj6g3v0815560.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0815560.1 tr|I0Z0S9|I0Z0S9_9CHLO SWIB-domain-containing
protein OS=Coccomyxa subellipsoidea C-169 PE=4
SV=1,31.91,1e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; BRG-1 ASSOCIATED
FACTOR 60 (BAF60),NULL; SWIB,SWIB/MDM2 domain; ,CUFF.58378.1
         (334 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G22360.1 | Symbols:  | SWIB complex BAF60b domain-containing ...   263   1e-70
AT3G19080.1 | Symbols:  | SWIB complex BAF60b domain-containing ...   158   4e-39
AT1G49520.1 | Symbols:  | SWIB complex BAF60b domain-containing ...   127   1e-29
AT2G14880.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |...    75   9e-14
AT4G34290.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |...    72   5e-13
AT2G35605.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |...    69   3e-12
AT3G03590.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |...    66   3e-11
AT1G31760.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |...    57   2e-08
AT4G26810.2 | Symbols:  | SWIB/MDM2 domain superfamily protein |...    50   3e-06
AT4G26810.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |...    50   3e-06

>AT4G22360.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr4:11807811-11809660 FORWARD LENGTH=385
          Length = 385

 Score =  263 bits (672), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 133/206 (64%), Positives = 161/206 (78%), Gaps = 8/206 (3%)

Query: 136 KDSTQTKPKRRGGPGGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNK 195
           K+S     KR+GGPGGLNK+C VSPEL+V+VG+PALPRTEIV+QLWAYIRKNNLQDPSNK
Sbjct: 181 KESAPAGTKRKGGPGGLNKVCRVSPELEVVVGEPALPRTEIVRQLWAYIRKNNLQDPSNK 240

Query: 196 RKIICNDELRVVFETDCTDMFKMNKLLAKHIIALEPSKQPA-PKRQKVDVESGTKSAEPA 254
           RKIIC+D LRVVFETDCTDMFKMNKLLAKHI+ L+PSK     K+ K +VE+ T++ EP 
Sbjct: 241 RKIICDDALRVVFETDCTDMFKMNKLLAKHILPLDPSKDSGQAKKAKTEVETKTETTEPI 300

Query: 255 PSVIISDT------LANFFGVTGREMLQSEVLRRIWEYIKVKQLEDPVNPMAIMCDAKLQ 308
            S  IS T      L  FFG    EM   E++RR+WEYIK+  LEDPVNPMAI CD KL+
Sbjct: 301 SSTAISSTVTLSEPLGKFFGTGETEMADEEIIRRVWEYIKLNNLEDPVNPMAIQCDEKLR 360

Query: 309 EIFGCESISALGIPEVLGRHHIFRRS 334
           ++ GCESISA+GI E+L R H++++S
Sbjct: 361 DLLGCESISAVGINEML-RRHMYKQS 385



 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 43/58 (74%), Gaps = 2/58 (3%)

Query: 2  VVTEEEISEALQSLLRESNPRRPTFTTLNQVLHQLQTNLGHDLSHKLDFIAAQINLLL 59
          +V+++++++ +++LLR+S+P   + T+L+ ++ QL+  LG DL+ K  FI  QIN+LL
Sbjct: 1  MVSDQDLAKGVETLLRQSDPS--SLTSLSSIVQQLEAKLGLDLTEKTTFIRDQINILL 56


>AT3G19080.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr3:6596082-6598667 FORWARD LENGTH=462
          Length = 462

 Score =  158 bits (400), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 84/206 (40%), Positives = 120/206 (58%), Gaps = 19/206 (9%)

Query: 142 KPKRRGGPGGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICN 201
           KPKR+GG GG  K+C +SPELQ   G   L RTE+VK LW YI++NNLQDP++KR IIC+
Sbjct: 255 KPKRKGG-GGFAKVCSLSPELQAFTGVTELARTEVVKLLWKYIKENNLQDPNDKRSIICD 313

Query: 202 DELRVVFETDCTDMFKMNKLLAKHIIALEPS-----KQPAPKRQKVDVESGTKSAEP--- 253
           +  R +F  +  +MF+MNK L KHI  LE +        +PK  K  +ES   S EP   
Sbjct: 314 ESFRSLFPVESINMFQMNKQLTKHIWPLEDNAGESVSSKSPKNGKQKMESDGDSEEPNEK 373

Query: 254 ---------APSVIISDTLANFFGVTGREMLQSEVLRRIWEYIKVKQLEDPVNPMAIMCD 304
                    AP + +SD L  F G     + +++V++R+WEYI    L+DP +   ++CD
Sbjct: 374 DKKQKKEVLAP-LPLSDALVKFLGDGENSLSRADVVKRLWEYINHNDLQDPSDKRRVICD 432

Query: 305 AKLQEIFGCESISALGIPEVLGRHHI 330
            KL+E+F  +S     + ++L  H I
Sbjct: 433 EKLKELFEVDSFEDTSVSKLLTNHFI 458



 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 118/234 (50%), Gaps = 51/234 (21%)

Query: 142 KPKRRGGPGGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICN 201
           K K+RGG  G+ K+  +SP+L+ +VG   L RTE+VK++WAYIR+ +LQDP ++RKI+C+
Sbjct: 108 KAKKRGG--GITKVSQLSPQLEKVVGASQLGRTEVVKKMWAYIREKDLQDPKDRRKIVCD 165

Query: 202 DELRVVFETDCTDMFKMNKLLAKHIIALEPSKQPAPKRQKVDVESGTKSAE--------- 252
           + L  +F     +MF+MNK L KHI  L      A   ++ D +  ++  +         
Sbjct: 166 ELLHSLFRVKTINMFQMNKALTKHIWPLGDGDGCANDVKEEDEDEASEGTDKKGEQSEEV 225

Query: 253 -----------------------PAPSV---------------IISDTLANFFGVTGREM 274
                                  PA SV                +S  L  F GVT  E+
Sbjct: 226 EENKEEESEEQEVRSLRKRKRKKPAKSVEKPKRKGGGGFAKVCSLSPELQAFTGVT--EL 283

Query: 275 LQSEVLRRIWEYIKVKQLEDPVNPMAIMCDAKLQEIFGCESISALGIPEVLGRH 328
            ++EV++ +W+YIK   L+DP +  +I+CD   + +F  ESI+   + + L +H
Sbjct: 284 ARTEVVKLLWKYIKENNLQDPNDKRSIICDESFRSLFPVESINMFQMNKQLTKH 337



 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 167 GQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRVVFETDCTDMFKMNKLLAKHI 226
           G+ +L R ++VK+LW YI  N+LQDPS+KR++IC+++L+ +FE D  +   ++KLL  H 
Sbjct: 398 GENSLSRADVVKRLWEYINHNDLQDPSDKRRVICDEKLKELFEVDSFEDTSVSKLLTNHF 457

Query: 227 IALE 230
           I  E
Sbjct: 458 IKAE 461


>AT1G49520.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr1:18329736-18331691 FORWARD LENGTH=372
          Length = 372

 Score =  127 bits (318), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 118/235 (50%), Gaps = 52/235 (22%)

Query: 142 KPKRRGGPGGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICN 201
           K K+RGG  G NK+C +SP+L+  +G   L RTE+VK++WAYIR+++LQDP+N+R I+C+
Sbjct: 94  KAKKRGG--GFNKICQLSPQLEKFLGTSQLARTEVVKKMWAYIREHDLQDPTNRRNILCD 151

Query: 202 DELRVVFETDCTDMFKMNKLLAKHIIALEPSKQ--PAPKRQKVDVESGTKSAE------- 252
           + L  +F     +MF+MNK LAKHI AL          K + VD  SG +  +       
Sbjct: 152 ESLHSLFRVKTINMFQMNKALAKHIWALNDGDGCFKNVKEEDVDETSGERDEKDVKIEEA 211

Query: 253 -------------------------PAPS--------------VIISDTLANFFGVTGRE 273
                                    PA S                +S  L  F G    +
Sbjct: 212 LENNEEESREEEDRSVRKRKRKKRKPAKSEEKPKKKGGGFTKVCSLSPELQAFTGTP--Q 269

Query: 274 MLQSEVLRRIWEYIKVKQLEDPVNPMAIMCDAKLQEIFGCESISALGIPEVLGRH 328
           + ++EV++ +W+YIK   L+DP +   I+CD  L+ +F  ESI+   + + L +H
Sbjct: 270 LARTEVVKMLWKYIKENNLQDPSDKRTIICDESLRSLFPVESINMFQMNKQLAKH 324



 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/120 (46%), Positives = 78/120 (65%), Gaps = 8/120 (6%)

Query: 139 TQTKPKRRGGPGGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKI 198
           ++ KPK++GG  G  K+C +SPELQ   G P L RTE+VK LW YI++NNLQDPS+KR I
Sbjct: 240 SEEKPKKKGG--GFTKVCSLSPELQAFTGTPQLARTEVVKMLWKYIKENNLQDPSDKRTI 297

Query: 199 ICNDELRVVFETDCTDMFKMNKLLAKHIIAL------EPSKQPAPKRQKVDVESGTKSAE 252
           IC++ LR +F  +  +MF+MNK LAKHI  L        +  P   +QK+ +E+   + E
Sbjct: 298 ICDESLRSLFPVESINMFQMNKQLAKHIWPLVQEDEAGTTNDPEKGKQKMKMETDEDNDE 357


>AT2G14880.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |
           chr2:6393686-6394841 REVERSE LENGTH=141
          Length = 141

 Score = 74.7 bits (182), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 56/80 (70%), Gaps = 1/80 (1%)

Query: 149 PGGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRVVF 208
           P G+ K   VSPE+Q IV  P + RT+ +K++WAYI++++LQDP NKR+I+C+++L+ +F
Sbjct: 62  PRGIMKPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIF 121

Query: 209 E-TDCTDMFKMNKLLAKHII 227
           E  D     ++ KL+  H +
Sbjct: 122 EGRDRVGFLEIAKLIGPHFL 141



 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 273 EMLQSEVLRRIWEYIKVKQLEDPVNPMAIMCDAKLQEIF-GCESISALGIPEVLGRHHI 330
           E+ +++ L+RIW YIK   L+DP N   I+CD KL++IF G + +  L I +++G H +
Sbjct: 83  EIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDRVGFLEIAKLIGPHFL 141


>AT4G34290.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |
           chr4:16410883-16412122 FORWARD LENGTH=144
          Length = 144

 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 3/92 (3%)

Query: 137 DSTQTKPKRRGGPGGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKR 196
           D T T   R   P G+ K   VS  +Q +VG P +PRT+ +K++WAYI++++LQDP NKR
Sbjct: 55  DPTTTTKTRE--PRGIMKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKR 112

Query: 197 KIICNDELRVVFE-TDCTDMFKMNKLLAKHII 227
            I+C+++L+ +FE  +     ++ KL+  H +
Sbjct: 113 DILCDEKLKKIFEGKERVGFLEIAKLIGPHFL 144



 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 6/92 (6%)

Query: 243 DVESGTKSAEPAPSVI---ISDTLANFFGVTGREMLQSEVLRRIWEYIKVKQLEDPVNPM 299
           D  + TK+ EP   +    +S  + +  GV   E+ +++ L+RIW YIK   L+DP N  
Sbjct: 55  DPTTTTKTREPRGIMKPRPVSQAMQDVVGVP--EIPRTQALKRIWAYIKEHDLQDPQNKR 112

Query: 300 AIMCDAKLQEIF-GCESISALGIPEVLGRHHI 330
            I+CD KL++IF G E +  L I +++G H +
Sbjct: 113 DILCDEKLKKIFEGKERVGFLEIAKLIGPHFL 144


>AT2G35605.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |
           chr2:14946161-14947027 FORWARD LENGTH=109
          Length = 109

 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 57/91 (62%), Gaps = 3/91 (3%)

Query: 137 DSTQTKPKRRGGPGGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKR 196
            ST  K  R+G   G+ K+  VS  L   +G+  + RT  VK++W YI+ NNLQ+P NKR
Sbjct: 17  SSTGAKTGRQGT--GILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKR 74

Query: 197 KIICNDELRVVFE-TDCTDMFKMNKLLAKHI 226
           +I+C+++L+ +F   D     +++KLL++H 
Sbjct: 75  EILCDEQLKTIFSGKDTVGFLEISKLLSQHF 105



 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 7/93 (7%)

Query: 241 KVDVESGTKSAEPAPSVI----ISDTLANFFGVTGREMLQSEVLRRIWEYIKVKQLEDPV 296
           K    +G K+      ++    +S  LANF G    E+ ++  +++IWEYIK+  L++PV
Sbjct: 14  KAASSTGAKTGRQGTGILKVVPVSKPLANFIGEN--EVSRTTAVKKIWEYIKLNNLQNPV 71

Query: 297 NPMAIMCDAKLQEIF-GCESISALGIPEVLGRH 328
           N   I+CD +L+ IF G +++  L I ++L +H
Sbjct: 72  NKREILCDEQLKTIFSGKDTVGFLEISKLLSQH 104


>AT3G03590.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |
           chr3:865341-866669 REVERSE LENGTH=143
          Length = 143

 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 1/78 (1%)

Query: 151 GLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRVVFE- 209
           G+ K+  VSP L   +G     RT+ +K +W YI+ ++LQ+P++KR+I C++ L+++FE 
Sbjct: 63  GIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEG 122

Query: 210 TDCTDMFKMNKLLAKHII 227
            D     +++KLL+ H +
Sbjct: 123 KDKVGFLEISKLLSPHFV 140


>AT1G31760.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |
           chr1:11372602-11373414 REVERSE LENGTH=112
          Length = 112

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 49/77 (63%), Gaps = 1/77 (1%)

Query: 151 GLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRVVFE- 209
           G+ K   VS +L    G+  L R   +K++W Y++ +NLQ+P+NK++I C+D+L+ +F+ 
Sbjct: 32  GIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKLKTIFDG 91

Query: 210 TDCTDMFKMNKLLAKHI 226
            D   + ++ KLL+ H 
Sbjct: 92  KDKVGITEIMKLLSPHF 108



 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 259 ISDTLANFFGVTGREMLQSEVLRRIWEYIKVKQLEDPVNPMAIMCDAKLQEIFGCESISA 318
           +S  LA+F G   RE+ +   L+++WEY+K+  L++P N   I CD KL+ IF  +    
Sbjct: 39  VSQQLASFAGE--RELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKLKTIF--DGKDK 94

Query: 319 LGIPEVL 325
           +GI E++
Sbjct: 95  VGITEIM 101


>AT4G26810.2 | Symbols:  | SWIB/MDM2 domain superfamily protein |
           chr4:13492247-13492649 REVERSE LENGTH=106
          Length = 106

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 150 GGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRVVF 208
           G L  L  +   L+  VGQ  + R     ++W+YI+ NNLQDP NK  +IC+++L+ + 
Sbjct: 18  GNLIDLVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNVVICDEKLKSIL 76


>AT4G26810.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |
           chr4:13492247-13492649 REVERSE LENGTH=106
          Length = 106

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 150 GGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRVVF 208
           G L  L  +   L+  VGQ  + R     ++W+YI+ NNLQDP NK  +IC+++L+ + 
Sbjct: 18  GNLIDLVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNVVICDEKLKSIL 76