Miyakogusa Predicted Gene

Lj6g3v0814370.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0814370.1 Non Chatacterized Hit- tr|D8LKL2|D8LKL2_ECTSI
Putative: Beta-tubulin folding cofactor A
OS=Ectocarpu,47.52,7e-17,Q547H3_ARATH_Q547H3;,Tubulin binding cofactor
A; no description,NULL; TBCA,Tubulin binding cofactor ,CUFF.58305.1
         (113 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G30410.2 | Symbols: KIS | tubulin folding cofactor A (KIESEL)...   176   3e-45
AT2G30410.1 | Symbols: KIS, TFCA | tubulin folding cofactor A (K...   176   3e-45

>AT2G30410.2 | Symbols: KIS | tubulin folding cofactor A (KIESEL) |
           chr2:12959812-12960552 FORWARD LENGTH=113
          Length = 113

 Score =  176 bits (445), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 86/110 (78%), Positives = 98/110 (89%)

Query: 1   MATVRSLKIKTSTCKRIVKELHSYEKEVESEAAKTADMKNRGADPYDLKQQENVLAESRM 60
           MAT+R+LKIKTSTCKRIVKELHSYEKEVE EAAKTADMK++GADPYDLKQQENVL ESRM
Sbjct: 1   MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRM 60

Query: 61  MIPDCRKRLEVALEDLKGILAEMEESDEKECPEVDEAKTTLSEVEKVLET 110
           MIPDC KRLE AL DLK  LAE+EE+DEKE PE+++AK T+++VEK   T
Sbjct: 61  MIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVEKQFPT 110


>AT2G30410.1 | Symbols: KIS, TFCA | tubulin folding cofactor A
           (KIESEL) | chr2:12959812-12960552 FORWARD LENGTH=113
          Length = 113

 Score =  176 bits (445), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 86/110 (78%), Positives = 98/110 (89%)

Query: 1   MATVRSLKIKTSTCKRIVKELHSYEKEVESEAAKTADMKNRGADPYDLKQQENVLAESRM 60
           MAT+R+LKIKTSTCKRIVKELHSYEKEVE EAAKTADMK++GADPYDLKQQENVL ESRM
Sbjct: 1   MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRM 60

Query: 61  MIPDCRKRLEVALEDLKGILAEMEESDEKECPEVDEAKTTLSEVEKVLET 110
           MIPDC KRLE AL DLK  LAE+EE+DEKE PE+++AK T+++VEK   T
Sbjct: 61  MIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVEKQFPT 110