Miyakogusa Predicted Gene
- Lj6g3v0802280.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0802280.2 Non Chatacterized Hit- tr|G7IP97|G7IP97_MEDTR
RNA-binding protein, putative OS=Medicago truncatula
G,39.24,0.00000000007,RRM_1,RNA recognition motif domain; seg,NULL;
RNA recognition motif,RNA recognition motif domain; SU,CUFF.58296.2
(324 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 380 e-106
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 380 e-106
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 355 2e-98
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 355 2e-98
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 337 9e-93
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 337 9e-93
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 337 9e-93
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 337 9e-93
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 333 7e-92
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 333 7e-92
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 322 3e-88
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 231 6e-61
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 229 2e-60
AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 228 6e-60
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 182 3e-46
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 182 4e-46
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 169 2e-42
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 166 1e-41
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 156 1e-38
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 140 1e-33
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 140 1e-33
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 85 6e-17
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 83 2e-16
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 83 2e-16
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 83 2e-16
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 81 1e-15
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 80 2e-15
AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 79 3e-15
AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 79 4e-15
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 79 4e-15
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 77 1e-14
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 77 2e-14
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 77 2e-14
AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 77 2e-14
AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 76 2e-14
AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 76 4e-14
AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 75 6e-14
AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 75 6e-14
AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 75 6e-14
AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 75 6e-14
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 75 6e-14
AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 75 7e-14
AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 75 7e-14
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 9e-14
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 9e-14
AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 1e-13
AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 1e-13
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 74 1e-13
AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 1e-13
AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 1e-13
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 74 2e-13
AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 2e-13
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 2e-13
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 73 2e-13
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 73 2e-13
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 6e-13
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 72 7e-13
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 71 9e-13
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 71 9e-13
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 71 1e-12
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 70 2e-12
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 70 2e-12
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 70 3e-12
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 70 3e-12
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 70 3e-12
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 70 3e-12
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 69 3e-12
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 69 5e-12
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 69 6e-12
AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 9e-12
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 68 1e-11
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 67 1e-11
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 67 1e-11
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 2e-11
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 2e-11
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 67 2e-11
AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 2e-11
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 2e-11
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 67 2e-11
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 67 2e-11
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 66 3e-11
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 66 3e-11
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 66 4e-11
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 66 4e-11
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 66 4e-11
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 65 5e-11
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 65 6e-11
AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 1e-10
AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 1e-10
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 64 1e-10
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 64 2e-10
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 64 2e-10
AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 63 2e-10
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 63 3e-10
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 3e-10
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 3e-10
AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 3e-10
AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 4e-10
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 4e-10
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 62 6e-10
AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 7e-10
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 9e-10
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 9e-10
AT1G16610.3 | Symbols: SR45 | arginine/serine-rich 45 | chr1:567... 61 1e-09
AT1G16610.1 | Symbols: SR45, RNPS1 | arginine/serine-rich 45 | c... 61 1e-09
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 61 1e-09
AT1G16610.2 | Symbols: SR45, RNPS1 | arginine/serine-rich 45 | c... 61 1e-09
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 1e-09
AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 1e-09
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 60 2e-09
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 60 2e-09
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 60 2e-09
AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 3e-09
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 5e-09
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 6e-09
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 58 9e-09
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 2e-08
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 2e-08
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 2e-08
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 2e-08
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 56 3e-08
AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 56 3e-08
AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 56 3e-08
AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing... 56 3e-08
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 56 4e-08
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 4e-08
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |... 55 5e-08
AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 55 6e-08
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 55 7e-08
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 7e-08
AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 55 7e-08
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 55 8e-08
AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like ... 54 1e-07
AT3G54770.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT5G04810.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 54 1e-07
AT2G16940.3 | Symbols: | Splicing factor, CC1-like | chr2:73428... 54 2e-07
AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like... 54 2e-07
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 54 2e-07
AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 54 2e-07
AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 54 2e-07
AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 54 2e-07
AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 54 2e-07
AT2G47310.1 | Symbols: | flowering time control protein-related... 53 3e-07
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 4e-07
AT2G43370.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 4e-07
AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 5e-07
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 51 1e-06
AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 1e-06
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 50 2e-06
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 50 2e-06
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 50 2e-06
AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 49 3e-06
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 49 7e-06
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 380 bits (975), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/300 (64%), Positives = 229/300 (76%), Gaps = 4/300 (1%)
Query: 1 MESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVA 60
M+SD GKLFIGGISWDTNEE LKEYF +GEVIE VI++DR TGRARGFGFVVFAD AVA
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60
Query: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXX--XTKKIFVGGLPSTIT 118
E VI +KH IDGR VEAKKAVPRDDQ VNR T+KIFVGGLPS++T
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 119 ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEV 178
ESDFK YF+QFGT TDVVVMYDHNTQRPRGFGFITYDSEEAV+KVL KTFHELN KMVEV
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEV 180
Query: 179 KRAVPKELSPDPNRSPL-IGYNYGLNRASSYLNIYAQGYSMSPIGGHGVRMNGRFSPLTS 237
KRAVPKELSP P+RSPL GY+YG+NR ++ LN YAQG++ + +GG+G+RM+GRFSP+ +
Sbjct: 181 KRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGA 240
Query: 238 VRTGFSPFGNTGYGMGMNLDSGLNPXXXXXXXXXXXXXXXRIFSPFYGGTTSRYTTSICY 297
R+GF+ + ++GYGM +N D GL R SP+Y G T+R+ ++ Y
Sbjct: 241 GRSGFANY-SSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFGPAVGY 299
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 380 bits (975), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/300 (64%), Positives = 229/300 (76%), Gaps = 4/300 (1%)
Query: 1 MESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVA 60
M+SD GKLFIGGISWDTNEE LKEYF +GEVIE VI++DR TGRARGFGFVVFAD AVA
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60
Query: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXX--XTKKIFVGGLPSTIT 118
E VI +KH IDGR VEAKKAVPRDDQ VNR T+KIFVGGLPS++T
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 119 ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEV 178
ESDFK YF+QFGT TDVVVMYDHNTQRPRGFGFITYDSEEAV+KVL KTFHELN KMVEV
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEV 180
Query: 179 KRAVPKELSPDPNRSPL-IGYNYGLNRASSYLNIYAQGYSMSPIGGHGVRMNGRFSPLTS 237
KRAVPKELSP P+RSPL GY+YG+NR ++ LN YAQG++ + +GG+G+RM+GRFSP+ +
Sbjct: 181 KRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGA 240
Query: 238 VRTGFSPFGNTGYGMGMNLDSGLNPXXXXXXXXXXXXXXXRIFSPFYGGTTSRYTTSICY 297
R+GF+ + ++GYGM +N D GL R SP+Y G T+R+ ++ Y
Sbjct: 241 GRSGFANY-SSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFGPAVGY 299
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 355 bits (911), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 198/330 (60%), Positives = 230/330 (69%), Gaps = 31/330 (9%)
Query: 3 SDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAER 62
SDLGKLFIGGISWDT+EE L+EYFGKYG+++E VIMRDR TGRARGFGF+VFAD +VAER
Sbjct: 12 SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 71
Query: 63 VIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXX-------XXXXXXXXXXTKKIFVGGLPS 115
VIMDKHIIDGRTVEAKKAVPRDDQQ + R TKKIFVGGLPS
Sbjct: 72 VIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPS 131
Query: 116 TITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKM 175
+ITE++FK YFDQFGTI DVVVMYDHNTQRPRGFGFIT+DSEE+VD VL+KTFHELN KM
Sbjct: 132 SITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKM 191
Query: 176 VEVKRAVPKELSP-DPNRSPLIGY--NYGL--NRAS--SYLNIYAQGYSMSPIGGHGVRM 228
VEVKRAVPKELS PNRSPLIGY NYG+ NR+S SY N + GY+ + +G
Sbjct: 192 VEVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSANSYFNSFPPGYNNNNLGSA---- 247
Query: 229 NGRFSPLTSVRTGFSPFGNTGYGMGMNLDSGLNPXXXXXXXXXXXXXXXRIFSPFYGGTT 288
GRFSP+ S R FS F G+G+N + LN + F+ +
Sbjct: 248 -GRFSPIGSGRNAFSSF-----GLGLNQELNLNSNFDGNTLGYSRIPGNQYFNS---ASP 298
Query: 289 SRYTTSICYNGGNGRSDSFINSPSRNVWGN 318
+RY + I YN R DS N +R++WGN
Sbjct: 299 NRYNSPIGYN----RGDSAYNPSNRDLWGN 324
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 355 bits (911), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 198/330 (60%), Positives = 230/330 (69%), Gaps = 31/330 (9%)
Query: 3 SDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAER 62
SDLGKLFIGGISWDT+EE L+EYFGKYG+++E VIMRDR TGRARGFGF+VFAD +VAER
Sbjct: 9 SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 68
Query: 63 VIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXX-------XXXXXXXXXXTKKIFVGGLPS 115
VIMDKHIIDGRTVEAKKAVPRDDQQ + R TKKIFVGGLPS
Sbjct: 69 VIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPS 128
Query: 116 TITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKM 175
+ITE++FK YFDQFGTI DVVVMYDHNTQRPRGFGFIT+DSEE+VD VL+KTFHELN KM
Sbjct: 129 SITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKM 188
Query: 176 VEVKRAVPKELSP-DPNRSPLIGY--NYGL--NRAS--SYLNIYAQGYSMSPIGGHGVRM 228
VEVKRAVPKELS PNRSPLIGY NYG+ NR+S SY N + GY+ + +G
Sbjct: 189 VEVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSANSYFNSFPPGYNNNNLGSA---- 244
Query: 229 NGRFSPLTSVRTGFSPFGNTGYGMGMNLDSGLNPXXXXXXXXXXXXXXXRIFSPFYGGTT 288
GRFSP+ S R FS F G+G+N + LN + F+ +
Sbjct: 245 -GRFSPIGSGRNAFSSF-----GLGLNQELNLNSNFDGNTLGYSRIPGNQYFNS---ASP 295
Query: 289 SRYTTSICYNGGNGRSDSFINSPSRNVWGN 318
+RY + I YN R DS N +R++WGN
Sbjct: 296 NRYNSPIGYN----RGDSAYNPSNRDLWGN 321
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 337 bits (863), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 192/334 (57%), Positives = 229/334 (68%), Gaps = 32/334 (9%)
Query: 1 MESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVA 60
MESDLGKLFIGGISWDT+EE L++YF YG+V+E VIMRDR TGRARGFGF+VFAD V+
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXX----XTKKIFVGGLPST 116
ERVIMDKHIIDGRTVEAKKAVPRDDQQ + R TKKIFVGGLPS+
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 117 ITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMV 176
ITE +FK YFDQFGTI DVVVMYDHNTQRPRGFGFIT+DS++AVD+VL+KTFHELN K+V
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
Query: 177 EVKRAVPKELSPDPN-RSPL---IGYNYGLNR--ASSYLNIYAQG----YSMSPIGGHGV 226
EVKRAVPKE+SP N RSPL + Y G NR A+SY N +A G S+ P+G
Sbjct: 181 EVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPGPGFYNSLGPVG---- 236
Query: 227 RMNGRFSPLT-SVRTGFSPFGNTGYGMGMNLDSGLNPXXXXXXXXXXXXXXXRIFSPFYG 285
RFSP+ S R S F G+G+N D LN +P++
Sbjct: 237 ---RRFSPVIGSGRNAVSAF-----GLGLNHDLSLNLNPSCDGTSSTFGYNRIPSNPYFN 288
Query: 286 GTT-SRYTTSICYNGGNGRSDSFINSPSRNVWGN 318
G + +RYT+ I +N R++S NS +R++WGN
Sbjct: 289 GASPNRYTSPIGHN----RTESPYNSNNRDLWGN 318
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 337 bits (863), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 192/334 (57%), Positives = 229/334 (68%), Gaps = 32/334 (9%)
Query: 1 MESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVA 60
MESDLGKLFIGGISWDT+EE L++YF YG+V+E VIMRDR TGRARGFGF+VFAD V+
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXX----XTKKIFVGGLPST 116
ERVIMDKHIIDGRTVEAKKAVPRDDQQ + R TKKIFVGGLPS+
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 117 ITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMV 176
ITE +FK YFDQFGTI DVVVMYDHNTQRPRGFGFIT+DS++AVD+VL+KTFHELN K+V
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
Query: 177 EVKRAVPKELSPDPN-RSPL---IGYNYGLNR--ASSYLNIYAQG----YSMSPIGGHGV 226
EVKRAVPKE+SP N RSPL + Y G NR A+SY N +A G S+ P+G
Sbjct: 181 EVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPGPGFYNSLGPVG---- 236
Query: 227 RMNGRFSPLT-SVRTGFSPFGNTGYGMGMNLDSGLNPXXXXXXXXXXXXXXXRIFSPFYG 285
RFSP+ S R S F G+G+N D LN +P++
Sbjct: 237 ---RRFSPVIGSGRNAVSAF-----GLGLNHDLSLNLNPSCDGTSSTFGYNRIPSNPYFN 288
Query: 286 GTT-SRYTTSICYNGGNGRSDSFINSPSRNVWGN 318
G + +RYT+ I +N R++S NS +R++WGN
Sbjct: 289 GASPNRYTSPIGHN----RTESPYNSNNRDLWGN 318
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 337 bits (863), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 192/334 (57%), Positives = 229/334 (68%), Gaps = 32/334 (9%)
Query: 1 MESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVA 60
MESDLGKLFIGGISWDT+EE L++YF YG+V+E VIMRDR TGRARGFGF+VFAD V+
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXX----XTKKIFVGGLPST 116
ERVIMDKHIIDGRTVEAKKAVPRDDQQ + R TKKIFVGGLPS+
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 117 ITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMV 176
ITE +FK YFDQFGTI DVVVMYDHNTQRPRGFGFIT+DS++AVD+VL+KTFHELN K+V
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
Query: 177 EVKRAVPKELSPDPN-RSPL---IGYNYGLNR--ASSYLNIYAQG----YSMSPIGGHGV 226
EVKRAVPKE+SP N RSPL + Y G NR A+SY N +A G S+ P+G
Sbjct: 181 EVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPGPGFYNSLGPVG---- 236
Query: 227 RMNGRFSPLT-SVRTGFSPFGNTGYGMGMNLDSGLNPXXXXXXXXXXXXXXXRIFSPFYG 285
RFSP+ S R S F G+G+N D LN +P++
Sbjct: 237 ---RRFSPVIGSGRNAVSAF-----GLGLNHDLSLNLNPSCDGTSSTFGYNRIPSNPYFN 288
Query: 286 GTT-SRYTTSICYNGGNGRSDSFINSPSRNVWGN 318
G + +RYT+ I +N R++S NS +R++WGN
Sbjct: 289 GASPNRYTSPIGHN----RTESPYNSNNRDLWGN 318
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 337 bits (863), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 192/334 (57%), Positives = 229/334 (68%), Gaps = 32/334 (9%)
Query: 1 MESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVA 60
MESDLGKLFIGGISWDT+EE L++YF YG+V+E VIMRDR TGRARGFGF+VFAD V+
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXX----XTKKIFVGGLPST 116
ERVIMDKHIIDGRTVEAKKAVPRDDQQ + R TKKIFVGGLPS+
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 117 ITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMV 176
ITE +FK YFDQFGTI DVVVMYDHNTQRPRGFGFIT+DS++AVD+VL+KTFHELN K+V
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
Query: 177 EVKRAVPKELSPDPN-RSPL---IGYNYGLNR--ASSYLNIYAQG----YSMSPIGGHGV 226
EVKRAVPKE+SP N RSPL + Y G NR A+SY N +A G S+ P+G
Sbjct: 181 EVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPGPGFYNSLGPVG---- 236
Query: 227 RMNGRFSPLT-SVRTGFSPFGNTGYGMGMNLDSGLNPXXXXXXXXXXXXXXXRIFSPFYG 285
RFSP+ S R S F G+G+N D LN +P++
Sbjct: 237 ---RRFSPVIGSGRNAVSAF-----GLGLNHDLSLNLNPSCDGTSSTFGYNRIPSNPYFN 288
Query: 286 GTT-SRYTTSICYNGGNGRSDSFINSPSRNVWGN 318
G + +RYT+ I +N R++S NS +R++WGN
Sbjct: 289 GASPNRYTSPIGHN----RTESPYNSNNRDLWGN 318
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 333 bits (855), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 174/319 (54%), Positives = 220/319 (68%), Gaps = 6/319 (1%)
Query: 1 MESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVA 60
ME + KLFIGGISW+T+E+ L++YF +GEV+E VIM+DR TGRARGFGFVVFAD VA
Sbjct: 1 MEMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVA 60
Query: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITES 120
ERV++ KHIIDG+ VEAKKAVPRDD N+ +KKIFVGGL S++TE+
Sbjct: 61 ERVVLLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEA 120
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKR 180
+FKKYF QFG ITDVVVMYDH TQRPRGFGFI+YDSEEAVDKVL KTFHELN KMVEVK
Sbjct: 121 EFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKL 180
Query: 181 AVPKELSPDPNRSPLIGYNYGLNRASSYLNIYAQGYSMSPIGGHGVRMNGRFSPLTSVRT 240
AVPK+++ + R+ + ++G +R SS LN Y QG+S SPI G+GV+ R+SP R
Sbjct: 181 AVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRYSPAVGNRG 240
Query: 241 GFSPFGNTGYGMGMNLDSGLNPXXXXXXXXXXXXXXXRIFSPFYGGTTSRYTTSICYNGG 300
GFSPFG+ GYG+ +N + P R FSP Y + R+ + + G
Sbjct: 241 GFSPFGH-GYGIELNFE----PNQTQNYGSGSSGGFGRPFSPGYAASLGRFGSQMESGGA 295
Query: 301 NGRSDSFIN-SPSRNVWGN 318
+ + S +N +P ++WGN
Sbjct: 296 SVGNGSVLNAAPKNHLWGN 314
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 333 bits (855), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 174/319 (54%), Positives = 220/319 (68%), Gaps = 6/319 (1%)
Query: 1 MESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVA 60
ME + KLFIGGISW+T+E+ L++YF +GEV+E VIM+DR TGRARGFGFVVFAD VA
Sbjct: 1 MEMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVA 60
Query: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITES 120
ERV++ KHIIDG+ VEAKKAVPRDD N+ +KKIFVGGL S++TE+
Sbjct: 61 ERVVLLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEA 120
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKR 180
+FKKYF QFG ITDVVVMYDH TQRPRGFGFI+YDSEEAVDKVL KTFHELN KMVEVK
Sbjct: 121 EFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKL 180
Query: 181 AVPKELSPDPNRSPLIGYNYGLNRASSYLNIYAQGYSMSPIGGHGVRMNGRFSPLTSVRT 240
AVPK+++ + R+ + ++G +R SS LN Y QG+S SPI G+GV+ R+SP R
Sbjct: 181 AVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRYSPAVGNRG 240
Query: 241 GFSPFGNTGYGMGMNLDSGLNPXXXXXXXXXXXXXXXRIFSPFYGGTTSRYTTSICYNGG 300
GFSPFG+ GYG+ +N + P R FSP Y + R+ + + G
Sbjct: 241 GFSPFGH-GYGIELNFE----PNQTQNYGSGSSGGFGRPFSPGYAASLGRFGSQMESGGA 295
Query: 301 NGRSDSFIN-SPSRNVWGN 318
+ + S +N +P ++WGN
Sbjct: 296 SVGNGSVLNAAPKNHLWGN 314
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 322 bits (824), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 174/341 (51%), Positives = 220/341 (64%), Gaps = 28/341 (8%)
Query: 1 MESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVA 60
ME + KLFIGGISW+T+E+ L++YF +GEV+E VIM+DR TGRARGFGFVVFAD VA
Sbjct: 1 MEMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVA 60
Query: 61 ERVIMDKHIIDGR----------------------TVEAKKAVPRDDQQNVNRQXXXXXX 98
ERV++ KHIIDG+ VEAKKAVPRDD N+
Sbjct: 61 ERVVLLKHIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQG 120
Query: 99 XXXXXXTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 158
+KKIFVGGL S++TE++FKKYF QFG ITDVVVMYDH TQRPRGFGFI+YDSEE
Sbjct: 121 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 180
Query: 159 AVDKVLYKTFHELNAKMVEVKRAVPKELSPDPNRSPLIGYNYGLNRASSYLNIYAQGYSM 218
AVDKVL KTFHELN KMVEVK AVPK+++ + R+ + ++G +R SS LN Y QG+S
Sbjct: 181 AVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSP 240
Query: 219 SPIGGHGVRMNGRFSPLTSVRTGFSPFGNTGYGMGMNLDSGLNPXXXXXXXXXXXXXXXR 278
SPI G+GV+ R+SP R GFSPFG+ GYG+ +N + P R
Sbjct: 241 SPISGYGVKPEVRYSPAVGNRGGFSPFGH-GYGIELNFE----PNQTQNYGSGSSGGFGR 295
Query: 279 IFSPFYGGTTSRYTTSICYNGGNGRSDSFIN-SPSRNVWGN 318
FSP Y + R+ + + G + + S +N +P ++WGN
Sbjct: 296 PFSPGYAASLGRFGSQMESGGASVGNGSVLNAAPKNHLWGN 336
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 231 bits (588), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 104/192 (54%), Positives = 145/192 (75%), Gaps = 4/192 (2%)
Query: 1 MESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVA 60
M+SD GKLF+GGISW+T+E+ L+E+F YGEV + ++MRD+LTGR RGFGFV+F+D +V
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60
Query: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQNVNR----QXXXXXXXXXXXXTKKIFVGGLPST 116
+RV+ +KH ID R V+ K+A+ R++QQ R TKKIFVGGLP T
Sbjct: 61 DRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPT 120
Query: 117 ITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMV 176
+T+ +F++YF+ +G +TDV +MYD T RPRGFGF+++DSE+AVD VL+KTFH+L+ K V
Sbjct: 121 LTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQV 180
Query: 177 EVKRAVPKELSP 188
EVKRA+PK+ +P
Sbjct: 181 EVKRALPKDANP 192
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 105/192 (54%), Positives = 139/192 (72%), Gaps = 4/192 (2%)
Query: 1 MESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVA 60
MESD GKLFIGGISWDT+E L+EYF +GEV++V +MR++ TGR RGFGFV F+D AV
Sbjct: 1 MESDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVI 60
Query: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXX----XXXXXXTKKIFVGGLPST 116
+RV+ DKH ID R V+ K+A+ R++Q R TKKIFVGGLP
Sbjct: 61 DRVLQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPA 120
Query: 117 ITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMV 176
+T +F+ YF+ +G ++D V+M D TQRPRGFGF+++DSE++VD VL+KTFH+LN K V
Sbjct: 121 LTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQV 180
Query: 177 EVKRAVPKELSP 188
EVKRA+PK+ +P
Sbjct: 181 EVKRALPKDANP 192
>AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304106 REVERSE LENGTH=371
Length = 371
Score = 228 bits (580), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 124/245 (50%), Positives = 158/245 (64%), Gaps = 6/245 (2%)
Query: 75 VEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKYFDQFGTITD 134
VEAKKAVPRDD N+ +KKIFVGGL S++TE++FKKYF QFG ITD
Sbjct: 15 VEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITD 74
Query: 135 VVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRAVPKELSPDPNRSP 194
VVVMYDH TQRPRGFGFI+YDSEEAVDKVL KTFHELN KMVEVK AVPK+++ + R+
Sbjct: 75 VVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQ 134
Query: 195 LIGYNYGLNRASSYLNIYAQGYSMSPIGGHGVRMNGRFSPLTSVRTGFSPFGNTGYGMGM 254
+ ++G +R SS LN Y QG+S SPI G+GV+ R+SP R GFSPFG+ GYG+ +
Sbjct: 135 MNVNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRYSPAVGNRGGFSPFGH-GYGIEL 193
Query: 255 NLDSGLNPXXXXXXXXXXXXXXXRIFSPFYGGTTSRYTTSICYNGGNGRSDSFIN-SPSR 313
N + P R FSP Y + R+ + + G + + S +N +P
Sbjct: 194 NFE----PNQTQNYGSGSSGGFGRPFSPGYAASLGRFGSQMESGGASVGNGSVLNAAPKN 249
Query: 314 NVWGN 318
++WGN
Sbjct: 250 HLWGN 254
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 56/96 (58%), Gaps = 8/96 (8%)
Query: 3 SDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAER 62
S+ K+F+GG++ E K+YF ++G + +VV+M D T R RGFGF+ + ++
Sbjct: 43 SNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDK 102
Query: 63 VIMDK-HIIDGRTVEAKKAVPRD-------DQQNVN 90
V+ H ++G+ VE K AVP+D +Q NVN
Sbjct: 103 VLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVN 138
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 93/199 (46%), Positives = 128/199 (64%), Gaps = 14/199 (7%)
Query: 1 MESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVA 60
M+ D KLF+GGI+ +T+EE LK+YF +YG V+E V+ ++++TG+ RGFGFV FA+
Sbjct: 1 MDYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDV 60
Query: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQ--------------QNVNRQXXXXXXXXXXXXTK 106
+ + D H I G+ V+ +KA+ + + Q +N TK
Sbjct: 61 VKALRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTK 120
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
KIFVGGL S TE +FK YF++FG TDVVVM+D T RPRGFGF+TYDSE++V+ V+
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180
Query: 167 TFHELNAKMVEVKRAVPKE 185
FHEL+ K VEVKRA+PKE
Sbjct: 181 NFHELSDKRVEVKRAIPKE 199
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+GG+S +T EE K YF ++G +VV+M D +T R RGFGFV + DS + V+M
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTY-DSEDSVEVVMQ 179
Query: 67 K--HIIDGRTVEAKKAVPRDDQQNVN 90
H + + VE K+A+P++ Q+ N
Sbjct: 180 SNFHELSDKRVEVKRAIPKEGIQSNN 205
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
K+FVGG+ +E K+YF ++G + + VV + T +PRGFGF+ + ++ V K L
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 167 TFHELNAKMVEVKRAVPK-ELSPDP 190
T H + K V+V++A+ K EL P
Sbjct: 67 T-HFILGKPVDVRKAIRKHELYQQP 90
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 182 bits (461), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 90/185 (48%), Positives = 120/185 (64%), Gaps = 10/185 (5%)
Query: 6 GKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIM 65
GKLF+GG+SW+T E YFGK+GEV++ VIM DR+TG RGFGFV FADSAVAE+V+
Sbjct: 66 GKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE 125
Query: 66 DKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKY 125
+ H+ID R V+ K+ +PR D+ T+KIFVGGLP + E + K Y
Sbjct: 126 EDHVIDDRKVDLKRTLPRGDKDT---------DIKAVSKTRKIFVGGLPPLLEEDELKNY 176
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK-TFHELNAKMVEVKRAVPK 184
F +G I + +MYDH+T R RGFGF+T+ +E++VD++ HEL K VE+KRA PK
Sbjct: 177 FCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236
Query: 185 ELSPD 189
D
Sbjct: 237 RTGRD 241
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/190 (45%), Positives = 123/190 (64%), Gaps = 14/190 (7%)
Query: 6 GKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIM 65
GK+FIGG+ DT ++FGKYGE+ + VIMRDR TG+ RGFGF+ FAD +V ++VI
Sbjct: 19 GKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78
Query: 66 DKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKY 125
D H+I+G+ VE K+ +P+ N ++ TKKIFVGG+PST+TE + K +
Sbjct: 79 DTHVINGKQVEIKRTIPKGAGGNQSKD----------IKTKKIFVGGIPSTVTEDELKDF 128
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK-TFHELNAKMVEVKRAVPK 184
F ++G + + V+ DH T R RGFGF+ +DSEE VD++L K ++ VE+K+A PK
Sbjct: 129 FAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPK 188
Query: 185 ELSPDPNRSP 194
+ NRSP
Sbjct: 189 K---SLNRSP 195
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 131/202 (64%), Gaps = 17/202 (8%)
Query: 6 GKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIM 65
GK+F+GG++ +T ++FGKYGE+ + VIM+DR TG+ RGFGFV +ADS+V ++VI
Sbjct: 42 GKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ 101
Query: 66 DKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKY 125
D HII G+ VE K+ +PR + + + TKKIFVGG+PS++ + +FK++
Sbjct: 102 DNHIIIGKQVEIKRTIPRGSMSSNDFK------------TKKIFVGGIPSSVDDDEFKEF 149
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFH-ELNAKMVEVKRAVPK 184
F QFG + + +M DH+T R RGFGF+TY+SE+ VD +L K EL+ VE+K+A PK
Sbjct: 150 FMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPK 209
Query: 185 ELSPDPNRSPLIGYNYGLNRAS 206
+ PN +G +R++
Sbjct: 210 K----PNSVTTPSKRFGDSRSN 227
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 108/161 (67%), Gaps = 10/161 (6%)
Query: 6 GKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIM 65
GK+FIGG+ DT ++FGKYGE+ + VIMRDR TG+ RGFGF+ FAD +V ++VI
Sbjct: 19 GKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78
Query: 66 DKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKY 125
D H+I+G+ VE K+ +P+ N ++ TKKIFVGG+PST+TE + K +
Sbjct: 79 DTHVINGKQVEIKRTIPKGAGGNQSKD----------IKTKKIFVGGIPSTVTEDELKDF 128
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
F ++G + + V+ DH T R RGFGF+ +DSEE VD++L K
Sbjct: 129 FAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
KIF+GGL T + F K+F ++G ITD V+M D +T +PRGFGFIT+ VDKV+
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 167 TFHELNAKMVEVKRAVPK 184
T H +N K VE+KR +PK
Sbjct: 80 T-HVINGKQVEIKRTIPK 96
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 43/65 (66%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+GGI E+ LK++F KYG V+E ++RD T R+RGFGFV+F V + ++
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 67 KHIID 71
++ID
Sbjct: 170 GNMID 174
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 116/189 (61%), Gaps = 13/189 (6%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
KL + GI WD + + LK+Y K+G++ + ++M+DR TGR+RGFG+V FA + A+ +
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 67 KHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKYF 126
+H + R +E K A P+++ + ++ +IFV +PS+++ESDF+ +F
Sbjct: 64 EHFLGNRILEVKVATPKEEMRQPAKK------------VTRIFVARIPSSVSESDFRSHF 111
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRAVPKEL 186
+++G ITD+ + D+N+++ RG GFIT+ S ++V+ ++ T H+L V V RA PKE
Sbjct: 112 ERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDT-HDLGGTTVAVDRATPKED 170
Query: 187 SPDPNRSPL 195
P P+
Sbjct: 171 DHPPRPPPV 179
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 106 KKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLY 165
+K+ V G+P I K Y +FG + D +VM D +T R RGFG++T+ S E L
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL- 61
Query: 166 KTFHELNAKMVEVKRAVPKE 185
K H L +++EVK A PKE
Sbjct: 62 KGEHFLGNRILEVKVATPKE 81
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+G + + + + L++YFG++G + + I +D RGFGFV FA++ VA+RV
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 67 KHIIDGRTVEAKKAVPRDD 85
H I G+ V A P D+
Sbjct: 301 SHEICGQEVAIDSATPLDE 319
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
KIFVG LP + D + YF +FG I D + D RGFGF+T+ D+V +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 167 TFHELNAKMVEVKRAVP 183
+ HE+ + V + A P
Sbjct: 301 S-HEICGQEVAIDSATP 316
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 116/189 (61%), Gaps = 13/189 (6%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
KL + GI WD + + LK+Y K+G++ + ++M+DR TGR+RGFG+V FA + A+ +
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 67 KHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKYF 126
+H + R +E K A P+++ + ++ +IFV +PS+++ESDF+ +F
Sbjct: 64 EHFLGNRILEVKVATPKEEMRQPAKK------------VTRIFVARIPSSVSESDFRSHF 111
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRAVPKEL 186
+++G ITD+ + D+N+++ RG GFIT+ S ++V+ ++ T H+L V V RA PKE
Sbjct: 112 ERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDT-HDLGGTTVAVDRATPKED 170
Query: 187 SPDPNRSPL 195
P P+
Sbjct: 171 DHPPRPPPV 179
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 106 KKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLY 165
+K+ V G+P I K Y +FG + D +VM D +T R RGFG++T+ S E L
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL- 61
Query: 166 KTFHELNAKMVEVKRAVPKE 185
K H L +++EVK A PKE
Sbjct: 62 KGEHFLGNRILEVKVATPKE 81
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+G + + + + L++YFG++G + + I +D RGFGFV FA++ VA+RV
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 67 KHIIDGRTVEAKKAVPRDD 85
H I G+ V A P D+
Sbjct: 301 SHEICGQEVAIDSATPLDE 319
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
KIFVG LP + D + YF +FG I D + D RGFGF+T+ D+V +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 167 TFHELNAKMVEVKRAVP 183
+ HE+ + V + A P
Sbjct: 301 S-HEICGQEVAIDSATP 316
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 5/163 (3%)
Query: 6 GKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIM 65
G+L++G + + L + FG+ G V++V I+ D++T R+RGFGFV A+ +
Sbjct: 116 GRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQ 175
Query: 66 --DKHIIDGRTVEAK-KAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDF 122
+ I GRTV+ VPR + V R K++ G L +T
Sbjct: 176 MFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGL 235
Query: 123 KKYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
K F DQ G + V+Y+ NT R RGFGFI+++S E V L
Sbjct: 236 KDAFGDQPGVL-GAKVIYERNTGRSRGFGFISFESAENVQSAL 277
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVLY 165
+++VG LP TIT S+ + F + GT+ DV ++YD T R RGFGF+T S EEA + +
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 166 KTFHELNAKMVEV 178
++ + V+V
Sbjct: 177 FNSSQIGGRTVKV 189
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 96/205 (46%), Gaps = 24/205 (11%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
KLF+G + EE ++ YF ++G V+EV +++D+ TG+ +G FV +A S A+R I
Sbjct: 46 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 105
Query: 67 KH---IIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFK 123
H + G T + +++ + K+FVG L TE + +
Sbjct: 106 LHNQITLPGGTGPVQVRYADGERERIG------------TLEFKLFVGSLNKQATEKEVE 153
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL-----YKTFHELNAKMVEV 178
+ F QFG + DV +M D Q RG GF+ Y S+E + T N ++ V
Sbjct: 154 EIFLQFGHVEDVYLMRDEYRQS-RGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLI-V 211
Query: 179 KRAVPKELSPDPNR--SPLIGYNYG 201
+ A PK P +R +P +G G
Sbjct: 212 RFAEPKRPKPGESREMAPPVGLGSG 236
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%)
Query: 105 TKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
T K+FVG +P T TE + + YF+Q G + +V ++ D T + +G F+ Y + + D+ +
Sbjct: 44 TVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAI 103
Query: 165 YKTFHEL 171
+++
Sbjct: 104 RALHNQI 110
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 96/205 (46%), Gaps = 24/205 (11%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
KLF+G + EE ++ YF ++G V+EV +++D+ TG+ +G FV +A S A+R I
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 67 KH---IIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFK 123
H + G T + +++ + K+FVG L TE + +
Sbjct: 181 LHNQITLPGGTGPVQVRYADGERERIG------------TLEFKLFVGSLNKQATEKEVE 228
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL-----YKTFHELNAKMVEV 178
+ F QFG + DV +M D Q RG GF+ Y S+E + T N ++ V
Sbjct: 229 EIFLQFGHVEDVYLMRDEYRQS-RGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLI-V 286
Query: 179 KRAVPKELSPDPNR--SPLIGYNYG 201
+ A PK P +R +P +G G
Sbjct: 287 RFAEPKRPKPGESREMAPPVGLGSG 311
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%)
Query: 105 TKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
T K+FVG +P T TE + + YF+Q G + +V ++ D T + +G F+ Y + + D+ +
Sbjct: 119 TVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAI 178
Query: 165 YKTFHEL 171
+++
Sbjct: 179 RALHNQI 185
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 100/206 (48%), Gaps = 26/206 (12%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
KLF+G + EE ++ YF ++G V+EV +++D+ TG+ +G FV +A S A+R I
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 67 KH---IIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFK 123
H + G T + +++ + K+FVG L TE + +
Sbjct: 181 LHNQITLPGGTGPVQVRYADGERERIG------------TLEFKLFVGSLNKQATEKEVE 228
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE----AVDKV--LYKTFHELNAKMVE 177
+ F QFG + DV +M D Q RG GF+ Y S+E A+D + Y T N ++
Sbjct: 229 EIFLQFGHVEDVYLMRDEYRQS-RGCGFVKYSSKETAMAAIDGLNGTY-TMRGCNQPLI- 285
Query: 178 VKRAVPKELSPDPNR--SPLIGYNYG 201
V+ A PK P +R +P +G G
Sbjct: 286 VRFAEPKRPKPGESREMAPPVGLGSG 311
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%)
Query: 105 TKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
T K+FVG +P T TE + + YF+Q G + +V ++ D T + +G F+ Y + + D+ +
Sbjct: 119 TVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAI 178
Query: 165 YKTFHEL 171
+++
Sbjct: 179 RALHNQI 185
>AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686932-28688506 REVERSE LENGTH=285
Length = 285
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAE 61
++ K+F+GG++W+T E L+++F +YGE++E V++ D+ TGR++G+GFV F D A
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAAR 79
Query: 62 RVIMDK-HIIDGRTVEAKKA 80
R D IIDGR A
Sbjct: 80 RACADPTPIIDGRRANCNLA 99
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
K+FVGGL +++F+Q+G I + VV+ D NT R +G+GF+T+ EA +
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRAC 82
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+GG++W+T + ++ YF ++GE++E VI+ D+ TG+++G+GFV F DS A R + D
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 67 KH-IIDGRTVEAKKA 80
+ +IDGR A
Sbjct: 78 PNPVIDGRKANCNIA 92
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVDKV 163
K+FVGGL + ++YFDQFG I + V++ D T + +G+GF+T+ DS+ A V
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAV 75
>AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:20273863-20275827 REVERSE LENGTH=261
Length = 261
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 55/80 (68%), Gaps = 1/80 (1%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAE 61
++ L K+F+GG++WDT++E + ++F KYG+++E VI+ D+LT R++G+GFV F D+ A
Sbjct: 13 DTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAAT 72
Query: 62 RVIMDKH-IIDGRTVEAKKA 80
R D II+GR A
Sbjct: 73 RACEDSTPIINGRRANCNLA 92
>AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAE 61
++ K+F+GG++W+T E L+ +F +YG+++E V++ D+ TGR++G+GFV F D A
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 79
Query: 62 RVIMDK-HIIDGRTVEAKKA 80
R +D IIDGR A
Sbjct: 80 RACVDPTPIIDGRRANCNLA 99
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
K+FVGGL +++FDQ+G I + VV+ D NT R +G+GF+T+ EA +
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC 82
>AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAE 61
++ K+F+GG++W+T E L+ +F +YG+++E V++ D+ TGR++G+GFV F D A
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 79
Query: 62 RVIMDK-HIIDGRTVEAKKA 80
R +D IIDGR A
Sbjct: 80 RACVDPTPIIDGRRANCNLA 99
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
K+FVGGL +++FDQ+G I + VV+ D NT R +G+GF+T+ EA +
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC 82
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 10/153 (6%)
Query: 3 SDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAER 62
S+ KLF+G +++D N + L F + G V ++ +R T ++RGFGFV + AE
Sbjct: 147 SEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAET 206
Query: 63 VI--MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITES 120
+ +++ ++GR + KA PR + +++VG LP +
Sbjct: 207 AVEKFNRYDLNGRLLTVNKAAPRGSRPE--------RAPRVYEPAFRVYVGNLPWDVDNG 258
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
++ F + G + + V+YD T R RGFGF+T
Sbjct: 259 RLEQLFSEHGKVVEARVVYDRETGRSRGFGFVT 291
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
++++G + WD + L++ F ++G+V+E ++ DR TGR+RGFGFV +D I
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 65 MDKHIIDGRTVEAKKAVPR 83
+D ++GR + A R
Sbjct: 305 LDGQNLEGRAIRVNVAEER 323
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
K+FVG L + F+Q GT+ V+Y+ T + RGFGF+T S + + + K
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 167 -TFHELNAKMVEVKRAVPKELSPDPNRSPLI 196
++LN +++ V +A P+ P R+P +
Sbjct: 211 FNRYDLNGRLLTVNKAAPR--GSRPERAPRV 239
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAE 61
++ L K+F+GG++W+T + ++ YF ++GE++E V++ D+ TGR++G+GFV F ++ A
Sbjct: 18 DTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAM 77
Query: 62 RVIMDKH-IIDGRTVEAKKAV 81
R + + +IDGR A
Sbjct: 78 RACQNMNPVIDGRRANCNLAC 98
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
KIFVGGL ++YF+QFG I + VV+ D NT R +G+GF+T+ EA +
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 167 TFHELNAKMVEVKRAVPKELSPDPNRSPLIG 197
++ + A P P SP G
Sbjct: 83 MNPVIDGRRANCNLACLGAQKPRPPTSPRHG 113
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+GG++W+T + ++ YF ++GE++E VI+ D+ TG+++G+GFV F +S A R + D
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 67 KH-IIDGRTVEAKKA 80
+ +IDGR A
Sbjct: 78 PNPVIDGRKANCNIA 92
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 37/58 (63%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
K+FVGGL + ++YF+QFG I + V++ D NT + +G+GF+T+ ++ + +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
>AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=244
Length = 244
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAE 61
++ K+F+GG++W+T++ L+ YF ++G+++E V++ D+ +GR++G+GFV F D A+
Sbjct: 3 DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
Query: 62 RVIMDKH-IIDGRTVEAKKAV 81
+ +D +IDGR A
Sbjct: 63 KACVDPAPVIDGRRANCNLAA 83
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
K+FVGGL + + YF+QFG I + VV+ D ++ R +G+GF+T+ EA K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKAC 65
>AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=245
Length = 245
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAE 61
++ K+F+GG++W+T++ L+ YF ++G+++E V++ D+ +GR++G+GFV F D A+
Sbjct: 3 DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
Query: 62 RVIMDKH-IIDGRTVEAKKAV 81
+ +D +IDGR A
Sbjct: 63 KACVDPAPVIDGRRANCNLAA 83
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
K+FVGGL + + YF+QFG I + VV+ D ++ R +G+GF+T+ EA K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKAC 65
>AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29449246 FORWARD LENGTH=271
Length = 271
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAE 61
++ K+F+GG++W+T + ++ YF ++GE++E VI+ D+ TG+++G+GFV F +S A
Sbjct: 13 DTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSAT 72
Query: 62 RVIMDKH-IIDGRTVEAKKA 80
R + D + +IDGR A
Sbjct: 73 RAVADPNPVIDGRKANCNIA 92
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 37/58 (63%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
K+FVGGL + ++YF+QFG I + V++ D NT + +G+GF+T+ ++ + +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
>AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 79/181 (43%), Gaps = 5/181 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+ G+ WDT E L E F +YGE+ + + D+++G+++G+GF+++ + A +
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 67 KHIIDGRTVEAKKAVPR-----DDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESD 121
G + A + + KKI+V + + +
Sbjct: 201 PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQK 260
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRA 181
+F +FG I + + D T RP+GF Y S E+ + L + ++ ++A
Sbjct: 261 LLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Query: 182 V 182
+
Sbjct: 321 I 321
>AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 79/181 (43%), Gaps = 5/181 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+ G+ WDT E L E F +YGE+ + + D+++G+++G+GF+++ + A +
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 67 KHIIDGRTVEAKKAVPR-----DDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESD 121
G + A + + KKI+V + + +
Sbjct: 201 PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQK 260
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRA 181
+F +FG I + + D T RP+GF Y S E+ + L + ++ ++A
Sbjct: 261 LLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Query: 182 V 182
+
Sbjct: 321 I 321
>AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 79/181 (43%), Gaps = 5/181 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+ G+ WDT E L E F +YGE+ + + D+++G+++G+GF+++ + A +
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 67 KHIIDGRTVEAKKAVPR-----DDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESD 121
G + A + + KKI+V + + +
Sbjct: 201 PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQK 260
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRA 181
+F +FG I + + D T RP+GF Y S E+ + L + ++ ++A
Sbjct: 261 LLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Query: 182 V 182
+
Sbjct: 321 I 321
>AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 79/181 (43%), Gaps = 5/181 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+ G+ WDT E L E F +YGE+ + + D+++G+++G+GF+++ + A +
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 67 KHIIDGRTVEAKKAVPR-----DDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESD 121
G + A + + KKI+V + + +
Sbjct: 201 PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQK 260
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRA 181
+F +FG I + + D T RP+GF Y S E+ + L + ++ ++A
Sbjct: 261 LLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Query: 182 V 182
+
Sbjct: 321 I 321
>AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 79/181 (43%), Gaps = 5/181 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+ G+ WDT E L E F +YGE+ + + D+++G+++G+GF+++ + A +
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 67 KHIIDGRTVEAKKAVPR-----DDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESD 121
G + A + + KKI+V + + +
Sbjct: 201 PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQK 260
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRA 181
+F +FG I + + D T RP+GF Y S E+ + L + ++ ++A
Sbjct: 261 LLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Query: 182 V 182
+
Sbjct: 321 I 321
>AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 12/178 (6%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVF--ADSAVAERVI 64
KLFI G++ DT E L+ F YG++ E +++ D++TG+++G+GFV F D A+
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 65 MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKK 124
K IDGR + A Q Q +KI+V +P +
Sbjct: 136 PSKK-IDGRVTVTQLAA--SGNQGTGSQ-------IADISMRKIYVANVPFDMPADRLLN 185
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRAV 182
+F +G + + + +D T + RGF Y + E L ++ K + K AV
Sbjct: 186 HFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLAV 243
>AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 12/178 (6%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVF--ADSAVAERVI 64
KLFI G++ DT E L+ F YG++ E +++ D++TG+++G+GFV F D A+
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 65 MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKK 124
K IDGR + A Q Q +KI+V +P +
Sbjct: 136 PSKK-IDGRVTVTQLAA--SGNQGTGSQ-------IADISMRKIYVANVPFDMPADRLLN 185
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRAV 182
+F +G + + + +D T + RGF Y + E L ++ K + K AV
Sbjct: 186 HFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLAV 243
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 78/152 (51%), Gaps = 26/152 (17%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
++FIGG+ D EE L++ + GE+ EV +M+DR +G ++G+ FV F VA++ I +
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 67 KHIID--GRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKK 124
H + G+T+ + ++ ++F+G +P TE +F+K
Sbjct: 177 LHSKEFKGKTIRCSLSETKN----------------------RLFIGNIPKNWTEDEFRK 214
Query: 125 YFDQFGT-ITDVVVMYD-HNTQRPRGFGFITY 154
+ G + ++ ++ D NT R RGF F+ Y
Sbjct: 215 VIEDVGPGVENIELIKDPTNTTRNRGFAFVLY 246
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 78/152 (51%), Gaps = 26/152 (17%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
++FIGG+ D EE L++ + GE+ EV +M+DR +G ++G+ FV F VA++ I +
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 67 KHIID--GRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKK 124
H + G+T+ + ++ ++F+G +P TE +F+K
Sbjct: 177 LHSKEFKGKTIRCSLSETKN----------------------RLFIGNIPKNWTEDEFRK 214
Query: 125 YFDQFGT-ITDVVVMYD-HNTQRPRGFGFITY 154
+ G + ++ ++ D NT R RGF F+ Y
Sbjct: 215 VIEDVGPGVENIELIKDPTNTTRNRGFAFVLY 246
>AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107659 FORWARD LENGTH=249
Length = 249
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+GG++W+T++E +K++F ++GE++E V++ D+ +GR++G+GFV F ++ A +D
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 67 K-HIIDGRTVEAKKA 80
+IDGR A
Sbjct: 74 ATPVIDGRRANCNLA 88
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
K+FVGGL + KK+F+QFG I + VV+ D + R +G+GF+T+ EA
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSAC 71
>AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107618 FORWARD LENGTH=242
Length = 242
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+GG++W+T++E +K++F ++GE++E V++ D+ +GR++G+GFV F ++ A +D
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 67 KH-IIDGRTVEAKKA 80
+IDGR A
Sbjct: 74 ATPVIDGRRANCNLA 88
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
K+FVGGL + KK+F+QFG I + VV+ D + R +G+GF+T+ EA
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSAC 71
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 14/160 (8%)
Query: 6 GKLFIGGISWDTNEEHLKEYFGKYG--EVIEVVIMRDRLTGRARGFGFVVFADSAVAERV 63
KLF+G + +D + + L F + G E+ EV+ RD T ++RGFGFV + AE+
Sbjct: 113 AKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRD--TDQSRGFGFVTMSTVEEAEKA 170
Query: 64 I--MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESD 121
+ + ++GR + +A PR + RQ +I+VG LP +
Sbjct: 171 VEKFNSFEVNGRRLTVNRAAPRGSRPE--RQPRVYDAAF------RIYVGNLPWDVDSGR 222
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
++ F + G + D V+ D T R RGFGF+ +E V+
Sbjct: 223 LERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVN 262
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
K+FVG LP + F+Q GT+ V+Y+ +T + RGFGF+T + E +K + K
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 167 -TFHELNAKMVEVKRAVPKELSPDPNRSPLI 196
E+N + + V RA P+ P R P +
Sbjct: 174 FNSFEVNGRRLTVNRAAPR--GSRPERQPRV 202
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
++++G + WD + L+ F ++G+V++ ++ DR TGR+RGFGFV ++ I
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 65 MDKHIIDGRTVEAKKAVPR 83
+D ++GR ++ A R
Sbjct: 268 LDGQNLEGRAIKVNVAEER 286
>AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 107/255 (41%), Gaps = 14/255 (5%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+ G+ WDT + L + F +YGE+ + + D+++G+++G+GF++F + A +
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQ 188
Query: 67 KHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKYF 126
G + A + Q N +KI+V + + I ++F
Sbjct: 189 PQKKIGTRMTACQLASIGPVQG-NPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFF 247
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRAVPKEL 186
+FG I + + D T RP+GF Y S E+ K L + ++ +A
Sbjct: 248 SRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKA----- 302
Query: 187 SPDPNRSPLIGYNY-GLNRASSYLNIYAQGYSMSPIGGHGVRMNGRFSPLTSVRTGF--- 242
+ P + +N+ N+ S Y GY GGHG + G + +
Sbjct: 303 NDGPKQVKQHQHNHNSHNQNSRYQRNDNNGYGAP--GGHGHFIAGNNQAVQAFNPAIGQA 360
Query: 243 --SPFGNTGYGMGMN 255
+ + G G+G+N
Sbjct: 361 LTALLASQGAGLGLN 375
>AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 107/255 (41%), Gaps = 14/255 (5%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+ G+ WDT + L + F +YGE+ + + D+++G+++G+GF++F + A +
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQ 188
Query: 67 KHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKYF 126
G + A + Q N +KI+V + + I ++F
Sbjct: 189 PQKKIGTRMTACQLASIGPVQG-NPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFF 247
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRAVPKEL 186
+FG I + + D T RP+GF Y S E+ K L + ++ +A
Sbjct: 248 SRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKA----- 302
Query: 187 SPDPNRSPLIGYNY-GLNRASSYLNIYAQGYSMSPIGGHGVRMNGRFSPLTSVRTGF--- 242
+ P + +N+ N+ S Y GY GGHG + G + +
Sbjct: 303 NDGPKQVKQHQHNHNSHNQNSRYQRNDNNGYGAP--GGHGHFIAGNNQAVQAFNPAIGQA 360
Query: 243 --SPFGNTGYGMGMN 255
+ + G G+G+N
Sbjct: 361 LTALLASQGAGLGLN 375
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
KLFIGG+++ +E+ L+E F KYGEV++ ++ DR TGR+RGFGFV F S A I
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 65 MDKHIIDGRTVEAKKAVPR 83
+D + GR V+ A R
Sbjct: 101 LDGRDLHGRVVKVNYANDR 119
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 105 TKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
+ K+F+GG+ ++ E ++ F ++G + D V+ D T R RGFGF+T+ S EA +
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 165 YKT-FHELNAKMVEVKRA 181
+L+ ++V+V A
Sbjct: 99 QALDGRDLHGRVVKVNYA 116
>AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107949 FORWARD LENGTH=347
Length = 347
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+GG++W+T++E +K++F ++GE++E V++ D+ +GR++G+GFV F ++ A +D
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 67 KH-IIDGRTVEAKKA 80
+IDGR A
Sbjct: 74 ATPVIDGRRANCNLA 88
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160
K+FVGGL + KK+F+QFG I + VV+ D + R +G+GF+T+ EA
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 22/150 (14%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
++FIGG+ D EE L++ + GE+ EV +M+DR +G ++G+ FV F VA++ I +
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 67 KHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKYF 126
H + + + ++F+G +P TE +F+K
Sbjct: 177 LHSKEFKASSTANC--------------------SLSLSNRLFIGNIPKNWTEDEFRKVI 216
Query: 127 DQFGT-ITDVVVMYD-HNTQRPRGFGFITY 154
+ G + ++ ++ D NT R RGF F+ Y
Sbjct: 217 EDVGPGVENIELIKDPTNTTRNRGFAFVLY 246
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
KLF+GG+SW T++ LK+ F +GEV E ++ DR TGR+RGFGFV F+ A I
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 65 MDKHIIDGRTVEAKKAVPR 83
MD ++GR + A R
Sbjct: 96 MDGKELNGRQIRVNLATER 114
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 105 TKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
+ K+FVGGL +S K+ F FG +T+ V+ D T R RGFGF+++ E++ + +
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 165 YKT-FHELNAKMVEVKRAVPKELSP 188
+ ELN + + V A + +P
Sbjct: 94 KEMDGKELNGRQIRVNLATERSSAP 118
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
KLF+GG+SW T++ LK+ F +GEV E ++ DR TGR+RGFGFV F+ A I
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 65 MDKHIIDGRTVEAKKAVPR 83
MD ++GR + A R
Sbjct: 96 MDGKELNGRQIRVNLATER 114
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 105 TKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
+ K+FVGGL +S K+ F FG +T+ V+ D T R RGFGF+++ E++ + +
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 165 YKT-FHELNAKMVEVKRAVPKELSP 188
+ ELN + + V A + +P
Sbjct: 94 KEMDGKELNGRQIRVNLATERSSAP 118
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 30/157 (19%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
++FIGG+ D EE L++ + GE+ EV +M+DR +G ++G+ FV F VA++ I +
Sbjct: 97 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 156
Query: 67 KHIID--GRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKK 124
H + G+T+ + ++ ++F+G +P TE +F+K
Sbjct: 157 LHSKEFKGKTIRCSLSETKN----------------------RLFIGNIPKNWTEDEFRK 194
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
I DV NT R RGF F+ Y + D
Sbjct: 195 ------VIEDVGPGDPTNTTRNRGFAFVLYYNNACAD 225
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 89/177 (50%), Gaps = 12/177 (6%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI--M 65
+++ ++ T ++ LK FG+YG++ V+M+D G+++GFGFV F ++ A R + +
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNFENADDAARAVESL 275
Query: 66 DKHIIDGRTV---EAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDF 122
+ H D + A+K R+ + V R + ++V L +I++
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRV-RYEQNLKEAADKFQSSNLYVKNLDPSISDEKL 334
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVK 179
K+ F FGT+T VM D N +G GF+ + + E + + +L+ KM+E K
Sbjct: 335 KEIFSPFGTVTSSKVMRDPNGTS-KGSGFVAFATPEEATEAM----SQLSGKMIESK 386
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 17/161 (10%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMDK 67
L++G + ++ + L + FG+ G V+ V + RD +T R+ G+G+V F + A R I +
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 68 HIID--GRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKY 125
+ I G+ + + RD +V R IF+ L +I
Sbjct: 98 NYIPLYGKPIRVMYS-HRDP--SVRR-----------SGAGNIFIKNLDESIDHKALHDT 143
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
F FG I V D + Q +G+GF+ Y +EE+ K + K
Sbjct: 144 FSSFGNIVSCKVAVDSSGQS-KGYGFVQYANEESAQKAIEK 183
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 90/179 (50%), Gaps = 16/179 (8%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMDK 67
+++ +S ++E L + FG++G VIMRD G+++GFGFV F +S A R +
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDG-EGKSKGFGFVNFENSDDAARAV--- 281
Query: 68 HIIDGRTVEAK-----KAVPRDDQQNVNRQXXXXXXXXXXXXTK--KIFVGGLPSTITES 120
++G+T + K KA + +++ +Q ++ ++V L ++T+
Sbjct: 282 DALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDD 341
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVK 179
+++F FGTIT VM D + RG GF+ + + E + + E+N KM+ K
Sbjct: 342 KLREHFAPFGTITSCKVMRDPSGVS-RGSGFVAFSTPEEATRAIT----EMNGKMIVTK 395
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 17/161 (10%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI--M 65
L++G + + L E F + G+V+ V + RD T R+ G+G+V +A A R + +
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 66 DKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKY 125
+ ++GR + +V RD IF+ L +I +
Sbjct: 107 NFMALNGRAIRVMYSV-RD-------------PSLRKSGVGNIFIKNLDKSIDHKALHET 152
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
F FG I V D + Q +G+GF+ YD++EA + K
Sbjct: 153 FSAFGPILSCKVAVDPSGQS-KGYGFVQYDTDEAAQGAIDK 192
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 90/179 (50%), Gaps = 16/179 (8%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMDK 67
+++ +S ++E L + FG++G VIMRD G+++GFGFV F +S A R +
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDG-EGKSKGFGFVNFENSDDAARAV--- 281
Query: 68 HIIDGRTVEAK-----KAVPRDDQQNVNRQXXXXXXXXXXXXTK--KIFVGGLPSTITES 120
++G+T + K KA + +++ +Q ++ ++V L ++T+
Sbjct: 282 DALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDD 341
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVK 179
+++F FGTIT VM D + RG GF+ + + E + + E+N KM+ K
Sbjct: 342 KLREHFAPFGTITSCKVMRDPSGVS-RGSGFVAFSTPEEATRAIT----EMNGKMIVTK 395
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 17/161 (10%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI--M 65
L++G + + L E F + G+V+ V + RD T R+ G+G+V +A A R + +
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 66 DKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKY 125
+ ++GR + +V RD IF+ L +I +
Sbjct: 107 NFMALNGRAIRVMYSV-RD-------------PSLRKSGVGNIFIKNLDKSIDHKALHET 152
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
F FG I V D + Q +G+GF+ YD++EA + K
Sbjct: 153 FSAFGPILSCKVAVDPSGQS-KGYGFVQYDTDEAAQGAIDK 192
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 88/178 (49%), Gaps = 19/178 (10%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRD--RLTGRARGFGFVVFADSAV 59
E L++ + D +E+ L+E F ++G+++ + I +D RL RG+ FV F +
Sbjct: 197 EEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRL---CRGYAFVNFDNPED 253
Query: 60 AERVIMDKHIIDGRTVEAK-----KAVPRDDQQNVNRQXXXXXXXXXXXXTK--KIFVGG 112
A R ++G +K +A + +++ + R+ K I+V
Sbjct: 254 ARRAA---ETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKN 310
Query: 113 LPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVLYKTFH 169
+ +TE + +K+F Q GTIT +M D + +GFGF+ + + EEA+D V KTFH
Sbjct: 311 VNVAVTEEELRKHFSQCGTITSTKLMCDEKG-KSKGFGFVCFSTPEEAIDAV--KTFH 365
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 74/158 (46%), Gaps = 20/158 (12%)
Query: 5 LGKLFIGGISWDTNEEHLKEYFGKYGEVI--EVVIMRDRLTGRARGFGFVVF--ADSAVA 60
+G +F+ + L++ F K+G ++ +V + D G++RG+GFV F D+A A
Sbjct: 111 VGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLED---GKSRGYGFVQFEQEDAAHA 167
Query: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITES 120
++ I+ + + K + + D+ + +++ L + ++E
Sbjct: 168 AIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYT------------NLYMKNLDADVSED 215
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 158
++ F +FG I + + D N + RG+ F+ +D+ E
Sbjct: 216 LLREKFAEFGKIVSLAIAKDEN-RLCRGYAFVNFDNPE 252
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain
| chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+ FIGG++W T++ L++ F KYG ++E ++ D+ +GR+RGFGF+ F + + I
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 65 MDKHIIDGRTVEAKKAVP 82
M+ +DGRT+ KA P
Sbjct: 68 MNGMDLDGRTITVDKAQP 85
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
+ F+GGL T ++ + F+++G + + V+ D + R RGFGFIT+D ++A+D+ +
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 167 -TFHELNAKMVEVKRAVPKELSPDPNRSPLIGYNYGLNR 204
+L+ + + V +A P + + G + G +R
Sbjct: 68 MNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGYDR 106
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 50/71 (70%), Gaps = 2/71 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
KLFIGG+S+ T E+ L E F K G+V+E I+ DR++ R++GFGFV FA + A++ +M+
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 67 --KHIIDGRTV 75
++GRT+
Sbjct: 95 FNGQQLNGRTI 105
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
K+F+GGL TE + F + G + + ++ D + R +GFGF+T+ S + K L +
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 167 -TFHELNAKMVEVKRAVPKE 185
+LN + + V A K+
Sbjct: 95 FNGQQLNGRTIFVDYAKAKQ 114
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 16/176 (9%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMDK 67
+++ +S T ++ LK FG+YG + V+MRD G++R FGFV F + A R +
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDG-DGKSRCFGFVNFENPEDAARAV--- 282
Query: 68 HIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTK-------KIFVGGLPSTITES 120
++G+ + K+ Q+ R+ ++V L T+T+
Sbjct: 283 EALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDE 342
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMV 176
++ F +FGTIT VM D + +G GF+ + + +VL +E+N KMV
Sbjct: 343 KLRELFAEFGTITSCKVMRDPSGTS-KGSGFVAFSAASEASRVL----NEMNGKMV 393
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 79/178 (44%), Gaps = 21/178 (11%)
Query: 5 LGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI 64
L L++G + ++ + L +YF + +V+ V + RD T + G+G+V ++++ AE+ +
Sbjct: 45 LCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAM 104
Query: 65 --MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDF 122
++ ++G+ + +FV L ++
Sbjct: 105 QKLNYSYLNGKMIRIT--------------YSSRDSSARRSGVGNLFVKNLDKSVDNKTL 150
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKR 180
+ F GTI V DH Q RG+GF+ +D+E++ + K LN K++ K+
Sbjct: 151 HEAFSGCGTIVSCKVATDHMGQS-RGYGFVQFDTEDSAKNAIEK----LNGKVLNDKQ 203
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
KLFIGG+SW T++ L++ F +G+V++ ++ DR TGR+RGFGFV F D A I
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 65 MDKHIIDGRTVEAKKAVPR 83
MD ++GR + A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 105 TKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
+ K+F+GGL ++ + F FG + D V+ D T R RGFGF+ ++ E A +
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 165 YKT-FHELNAKMVEVKRAVPKELSP 188
+ ELN + + V A + +P
Sbjct: 94 SEMDGKELNGRHIRVNPANDRPSAP 118
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
KLFIGG+SW T++ L++ F +G+V++ ++ DR TGR+RGFGFV F D A I
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 65 MDKHIIDGRTVEAKKAVPR 83
MD ++GR + A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 105 TKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
+ K+F+GGL ++ + F FG + D V+ D T R RGFGF+ ++ E A +
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 165 YKT-FHELNAKMVEVKRAVPKELSP 188
+ ELN + + V A + +P
Sbjct: 94 SEMDGKELNGRHIRVNPANDRPSAP 118
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
KLFIGG+SW T++ L++ F +G+V++ ++ DR TGR+RGFGFV F D A I
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 65 MDKHIIDGRTVEAKKAVPR 83
MD ++GR + A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 105 TKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
+ K+F+GGL ++ + F FG + D V+ D T R RGFGF+ ++ E A +
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 165 YKT-FHELNAKMVEVKRAVPKELSP 188
+ ELN + + V A + +P
Sbjct: 94 SEMDGKELNGRHIRVNPANDRPSAP 118
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
KLFIGG+SW T++ L++ F +G+V++ ++ DR TGR+RGFGFV F D A I
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 65 MDKHIIDGRTVEAKKAVPR 83
MD ++GR + A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 105 TKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
+ K+F+GGL ++ + F FG + D V+ D T R RGFGF+ ++ E A +
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 165 YKT-FHELNAKMVEVKRA 181
+ ELN + + V A
Sbjct: 94 SEMDGKELNGRHIRVNPA 111
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+ F+GG++W TN+E L+ F ++G+VI+ I+ DR +GR+RGFGFV F D I
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 65 MDKHIIDGRTVEAKKAVPR 83
M+ +DGR + +A R
Sbjct: 67 MNGKELDGRVITVNEAQSR 85
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV-DKVLY 165
+ FVGGL + D ++ F QFG + D ++ D + R RGFGF+T+ E+A+ D +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 166 KTFHELNAKMVEVKRAVPK 184
EL+ +++ V A +
Sbjct: 67 MNGKELDGRVITVNEAQSR 85
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 87/194 (44%), Gaps = 14/194 (7%)
Query: 3 SDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAER 62
SD+ L+IG + +E ++ F + GE ++R++LTG++ G+GF+ F +VAER
Sbjct: 57 SDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAER 116
Query: 63 VIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDF 122
V+ +G + + + R N + IFVG L +T+
Sbjct: 117 VL---QTYNGAPMPSTEQTFR---LNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYML 170
Query: 123 KKYFDQ-FGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRA 181
F +G++ V+ D T R +G+GF+ + E + + E+N + +
Sbjct: 171 SDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMT----EMNGQYCSTR-- 224
Query: 182 VPKELSPDPNRSPL 195
P + P N++ L
Sbjct: 225 -PMRIGPAANKNAL 237
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 8 LFIGGISWDTNEEHLKEYFGK-YGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+F+G ++ + + L + F YG V ++ DR TGR++G+GFV FAD R +
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 65 MDKHIIDGRTVEA-----KKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITE 119
M+ R + K A+P N Q T IFVGGL + +T+
Sbjct: 216 MNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTT--IFVGGLDANVTD 273
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRG--FGFITYDSEEAVDKVL 164
+ K F QFG + V + P G GF+ Y ++ + + L
Sbjct: 274 DELKSIFGQFGELLHVKI--------PPGKRCGFVQYANKASAEHAL 312
>AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3640349-3640876 REVERSE LENGTH=175
Length = 175
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+++GG+ W+T E L+ YF ++G++I V ++ DR TGR+ G+GFV F D+ A R +
Sbjct: 53 KIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRACQN 112
Query: 67 -KHIIDGRTVEAKKA 80
K +IDGR + A
Sbjct: 113 PKPVIDGREAKCNLA 127
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-M 65
K+F+GGIS+ T+E L+E F KYGEV++ I+ DR TGR+RGF FV F + A + +
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Query: 66 DKHIIDGRTVEAKKAV 81
D + GR + A
Sbjct: 95 DGQDLHGRRIRVNYAT 110
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 105 TKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
+ KIFVGG+ + E ++ F ++G + D ++ D T R RGF F+T+ S E +
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 165 YKTFHELNAKMVEVKRAV 182
+L+ + + V A
Sbjct: 93 QLDGQDLHGRRIRVNYAT 110
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+ F+GG++W T++ L+ F +YG+VI+ I+ DR TGR+RGFGFV F D + I
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 65 MDKHIIDGRTVEAKKA 80
M+ +DGR++ +A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+ F+GG++W T++ L+ F +YG+VI+ I+ DR TGR+RGFGFV F D + I
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 65 MDKHIIDGRTVEAKKA 80
M+ +DGR++ +A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVDKVLY 165
+IFVGGL +TE + FD++G IT+ +M +T RPRGFGFIT+ D A D + +
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 166 KTFHELNAKMVEVKRAVPK 184
EL K++ V +A PK
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
++F+GG+SWD E L+ F +YG++ E IM R TGR RGFGF+ F D A+ I
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 67 KH--IIDGRTVEAKKAVPRDDQQNVN 90
H + + + KA P+ ++V+
Sbjct: 73 MHGRELGNKVISVNKAEPKVGGEDVD 98
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVDKVLY 165
+IFVGGL +TE + FD++G IT+ +M +T RPRGFGFIT+ D A D + +
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 166 KTFHELNAKMVEVKRAVPK 184
EL K++ V +A PK
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
++F+GG+SWD E L+ F +YG++ E IM R TGR RGFGF+ F D A+ I
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 67 KH--IIDGRTVEAKKAVPRDDQQNVN 90
H + + + KA P+ ++V+
Sbjct: 73 MHGRELGNKVISVNKAEPKVGGEDVD 98
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 107/251 (42%), Gaps = 29/251 (11%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVF--ADSAVAERVIM 65
+++ + + LK FG++GE+ V+M+D G++R FGFV F A++AV M
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDG-EGKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 66 DKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKK---IFVGGLPSTITESDF 122
+ ++D + + +A + ++ + T+K ++V L ++ +
Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKL 239
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMV-----E 177
++ F +FGTIT VM H+ +G GF+ + + E K + K +N KMV
Sbjct: 240 EELFSEFGTITSCKVMV-HSNGISKGVGFVEFSTSEEASKAMLK----MNGKMVGNKPIY 294
Query: 178 VKRAVPKEL------------SPDPNRSPLIGYNYGLNRASSYLNIYAQGYSMSPIGGHG 225
V A KE P P++ P+ S +GY+ P G
Sbjct: 295 VSLAQCKEQHKLHLQTQFNNPPPSPHQQPIFSQVVAPATMLSQ-QTPLRGYNFQPYSMCG 353
Query: 226 VRMNGRFSPLT 236
RM P++
Sbjct: 354 SRMPNSCPPIS 364
>AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21798382-21799109 FORWARD LENGTH=169
Length = 169
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAE 61
++ K+++GG+ W T +E L +F ++GE+I V ++ DR T R++G+GFV F D+ A
Sbjct: 9 DTTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESAT 68
Query: 62 RVIMDKH-IIDGRTVEAKKA 80
R D + I+GR K A
Sbjct: 69 RACKDPNPTIEGRITNCKLA 88
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
KI+VGGLP T + +F +FG I V V+ D T R +G+GF+T+ E+ +
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 167 TFHELNAKMVEVKRA 181
+ ++ K A
Sbjct: 74 PNPTIEGRITNCKLA 88
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADS--AVAERVI 64
KLFIGG+SW +E+ LK+ F +GEV EV I D+ +GR+RGFGFV FA+ A++ +
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 65 MDKHIIDGRTVEAKKAVPR 83
MD + GR + A+ R
Sbjct: 102 MDGKGLLGRPLRISFALER 120
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157
K+F+GGL ++ E K F FG + +V + YD + R RGFGF+ + E
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEE 92
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+ F+GG++W TN+E L+ F ++G+VI+ I+ DR +GR+RGFGFV F D I
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 65 MDKHIIDGRTVEAKKA 80
M+ +DGR + +A
Sbjct: 67 MNGKELDGRVITVNEA 82
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV-DKVLY 165
+ FVGGL + D ++ F QFG + D ++ D + R RGFGF+T+ E+A+ D +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 166 KTFHELNAKMVEVKRA 181
EL+ +++ V A
Sbjct: 67 MNGKELDGRVITVNEA 82
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+ F+GG++W TN+E L+ F ++G+VI+ I+ DR +GR+RGFGFV F D I
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 65 MDKHIIDGRTVEAKKA 80
M+ +DGR + +A
Sbjct: 67 MNGKELDGRVITVNEA 82
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV-DKVLY 165
+ FVGGL + D ++ F QFG + D ++ D + R RGFGF+T+ E+A+ D +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 166 KTFHELNAKMVEVKRA 181
EL+ +++ V A
Sbjct: 67 MNGKELDGRVITVNEA 82
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 19/182 (10%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMDK 67
+++GG+ +EE L E F + G V+ V + +DR+T + +GF+ + A+ I
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 68 HIID--GRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKY 125
++I G+ + KA D+++++ +F+G L + E
Sbjct: 87 NMIKLHGKPIRVNKA--SQDKKSLD-------------VGANLFIGNLDPDVDEKLLYDT 131
Query: 126 FDQFGTI-TDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK-TFHELNAKMVEVKRAVP 183
F FG I ++ +M D +T RGFGFI+YDS EA D + T L+ + + V A
Sbjct: 132 FSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYK 191
Query: 184 KE 185
K+
Sbjct: 192 KD 193
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
+IFVGGL +T+ D ++ F +FG I D +M + +T R RGFGFIT+ A+D+ + +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 167 TF-HELNAKMVEVKRAVPK 184
+ +++ V RA PK
Sbjct: 68 MHGRDFGDRVISVNRAEPK 86
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
++F+GG+S + + L+ F ++G++++ IM +R TGR+RGFGF+ FAD + I +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 67 KHIID--GRTVEAKKAVP---RDDQQN 88
H D R + +A P RDD ++
Sbjct: 68 MHGRDFGDRVISVNRAEPKLGRDDGES 94
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Query: 6 GKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIM 65
G +FI + + + L E F +G ++ + D + GR++G+GFV F A+ I
Sbjct: 146 GNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAI- 203
Query: 66 DKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKY 125
DK ++G + K+ V RQ ++V LP IT+ + KK
Sbjct: 204 DK--LNGMLLNDKQVF---VGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKT 258
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
F ++G I+ VVM D + R FGF+ + S EA + K
Sbjct: 259 FGKYGDISSAVVMKDQSGNS-RSFGFVNFVSPEAAAVAVEK 298
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 85/175 (48%), Gaps = 14/175 (8%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI--M 65
+++ + + ++ LK+ FGKYG++ V+M+D+ +G +R FGFV F A + M
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 66 DKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTK--KIFVGGLPSTITESDFK 123
+ + + +A + D++ R+ + +++ L ++ + K
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLK 359
Query: 124 KYFDQFGTITDVVVMYDHNTQ-RPRGFGFITY-DSEEAVDKVLYKTFHELNAKMV 176
+ F ++G +T VM N+Q RGFGF+ Y + EEA+ E+N KM+
Sbjct: 360 EMFSEYGNVTSCKVMM--NSQGLSRGFGFVAYSNPEEAL-----LAMKEMNGKMI 407
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 18/160 (11%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMDK 67
L++G + NE HL + F + V + + RD LT R+ G+ +V FA+ A R +
Sbjct: 61 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAM--- 116
Query: 68 HIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKYFD 127
E+ P D+ + +F+ L ++I + F
Sbjct: 117 --------ESLNYAPIRDRP-IRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFS 167
Query: 128 QFGTITDVVVMYDHNTQRPRGFGFITYDSEE----AVDKV 163
FGTI V D R +G+GF+ ++ EE A+DK+
Sbjct: 168 SFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKL 206
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Query: 6 GKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIM 65
G +FI + + + L E F +G ++ + D + GR++G+GFV F A+ I
Sbjct: 146 GNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAI- 203
Query: 66 DKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKY 125
DK ++G + K+ V RQ ++V LP IT+ + KK
Sbjct: 204 DK--LNGMLLNDKQVF---VGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKT 258
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
F ++G I+ VVM D + R FGF+ + S EA + K
Sbjct: 259 FGKYGDISSAVVMKDQSGNS-RSFGFVNFVSPEAAAVAVEK 298
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 85/175 (48%), Gaps = 14/175 (8%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI--M 65
+++ + + ++ LK+ FGKYG++ V+M+D+ +G +R FGFV F A + M
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 66 DKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTK--KIFVGGLPSTITESDFK 123
+ + + +A + D++ R+ + +++ L ++ + K
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLK 359
Query: 124 KYFDQFGTITDVVVMYDHNTQ-RPRGFGFITY-DSEEAVDKVLYKTFHELNAKMV 176
+ F ++G +T VM N+Q RGFGF+ Y + EEA+ E+N KM+
Sbjct: 360 EMFSEYGNVTSCKVMM--NSQGLSRGFGFVAYSNPEEAL-----LAMKEMNGKMI 407
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 18/160 (11%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMDK 67
L++G + NE HL + F + V + + RD LT R+ G+ +V FA+ A R +
Sbjct: 61 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAM--- 116
Query: 68 HIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKYFD 127
E+ P D+ + +F+ L ++I + F
Sbjct: 117 --------ESLNYAPIRDRP-IRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFS 167
Query: 128 QFGTITDVVVMYDHNTQRPRGFGFITYDSEE----AVDKV 163
FGTI V D R +G+GF+ ++ EE A+DK+
Sbjct: 168 SFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKL 206
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Query: 6 GKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIM 65
G +FI + + + L E F +G ++ + D +TGR++G+GFV F A+ I
Sbjct: 136 GNIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAI- 193
Query: 66 DKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKY 125
DK ++G + K+ + RQ ++V LP I E + +K
Sbjct: 194 DK--LNGMLMNDKQVF---VGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKT 248
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
F +FG I+ VVM D + R FGF+ ++ EA + K
Sbjct: 249 FGKFGVISSAVVMRDQSGNS-RCFGFVNFECTEAAASAVEK 288
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 34/185 (18%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVF----ADSAVAERV 63
+++ + + E+ L++ FGK+G + V+MRD+ +G +R FGFV F A ++ E++
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKM 289
Query: 64 ----IMDKHIIDGRTVEAKKAVPRDD-------QQNVNRQXXXXXXXXXXXXTKKIFVGG 112
+ D + GR A+K R++ Q+ +NR +++
Sbjct: 290 NGISLGDDVLYVGR---AQKKSEREEELRRKFEQERINR--------FEKSQGANLYLKN 338
Query: 113 LPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVDKVLYKTFHEL 171
L ++ + K+ F ++G +T VM + RGFGF+ Y + EEA+ + E+
Sbjct: 339 LDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMS-RGFGFVAYSNPEEAL-----RALSEM 392
Query: 172 NAKMV 176
N KM+
Sbjct: 393 NGKMI 397
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 8 LFIGGISWDTNEEHLKEYFG-KYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+F+G +S D ++ L E F KY V ++ D TGR++G+GFV F D + +
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 65 MDKHIIDGRTVEAKKAVPRD----DQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITES 120
M+ R + A PR QQ IFVGGL S++T+
Sbjct: 259 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDE 318
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY----DSEEAVDKV 163
D K+ F++FG I V + +G GF+ + ++EEA++K+
Sbjct: 319 DLKQPFNEFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEKL 359
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 15/163 (9%)
Query: 8 LFIGGISWDTNEEHLKEYF--GKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIM 65
+++G + +E +L F G E++ V ++R++ G + G+GFV F VA++V+
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 66 DKHIIDGRTVEAKKAVPRDDQQ---NVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDF 122
+ +G T +P DQ N IFVG L ++++
Sbjct: 163 E---FNGTT------MPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLL 213
Query: 123 KKYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
+ F +++ ++ V+ D NT R +G+GF+ + E K +
Sbjct: 214 HETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 19/192 (9%)
Query: 4 DLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERV 63
D+ L++G + +E +L F GEV V ++R++LT ++ G+GFV F A AE V
Sbjct: 106 DVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEV 165
Query: 64 IMDKHIIDGRTVEAKKAVPRDDQQ---NVNRQXXXXXXXXXXXXTKKIFVGGLPSTITES 120
+ + + +P DQ N +FVG L +T+
Sbjct: 166 LQNY---------SGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDV 216
Query: 121 DFKKYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL------YKTFHELNA 173
+ F D++ ++ V+ D NT R +G+GF+ + E + L Y + ++
Sbjct: 217 LLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRV 276
Query: 174 KMVEVKRAVPKE 185
+ KRA+ +
Sbjct: 277 GIATPKRAIANQ 288
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 26/176 (14%)
Query: 8 LFIGGISWDTNEEHLKEYFG-KYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+F+G +S D + L E F +Y V ++ D TGR++G+GFV F D R +
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 263
Query: 65 MDKHIIDGRTVEAKKAVPR---DDQQNVNRQXXXXX-------------XXXXXXXTKKI 108
M+ R + A P+ +QQ + Q I
Sbjct: 264 MNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATI 323
Query: 109 FVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVDKV 163
FVGG+ + + D ++ F QFG + V + +G GF+ + D + A D +
Sbjct: 324 FVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVG------KGCGFVQFADRKSAEDAI 373
>AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 22/150 (14%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
++++GGI D E LK + G GEV EV IMR++ +G +G+ FV F +A I
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 67 KHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKYF 126
+ D R K + ++F+G +P ESD KK
Sbjct: 153 LNNTDFRGKRIKCST--------------------TQAKHRLFLGNVPRNWMESDIKKAA 192
Query: 127 DQFGTITDVVVM--YDHNTQRPRGFGFITY 154
++ G +V + N R RGF FI Y
Sbjct: 193 NRIGPGVQIVELPKEPQNMGRNRGFAFIEY 222
>AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 22/150 (14%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
++++GGI D E LK + G GEV EV IMR++ +G +G+ FV F +A I
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 67 KHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKYF 126
+ D R K + ++F+G +P ESD KK
Sbjct: 153 LNNTDFRGKRIKCST--------------------TQAKHRLFLGNVPRNWMESDIKKAA 192
Query: 127 DQFGTITDVVVM--YDHNTQRPRGFGFITY 154
++ G +V + N R RGF FI Y
Sbjct: 193 NRIGPGVQIVELPKEPQNMGRNRGFAFIEY 222
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 15/164 (9%)
Query: 8 LFIGGISWDTNEEHLKEYFGK-YGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+F+G ++ D + L E F Y V ++ DR TGR++G+GFV FAD + R +
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 65 MDKHIIDGRTVEAKKAVPRDD--QQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDF 122
M+ R + A + Q + Q IFVG + ++TE D
Sbjct: 235 MNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDL 294
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRG--FGFITYDSEEAVDKVL 164
K F QFG + V + P G GF+ Y + ++ L
Sbjct: 295 KSVFGQFGELVHVKI--------PAGKRCGFVQYANRACAEQAL 330
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 82/194 (42%), Gaps = 17/194 (8%)
Query: 4 DLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERV 63
++ L+IG + +E +L FG GE ++R++ G + G+GF+ F + A AER
Sbjct: 78 EIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERN 137
Query: 64 IMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFK 123
+ +G + + + R + Q +FVG L +T+
Sbjct: 138 L---QTYNGAPMPSSEQAFRLNW----AQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLT 190
Query: 124 KYFDQ-FGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVDKVLYKTFHELNAKMVEVKRA 181
+ F + ++ V+ D T R +G+GF+ + D E + + E+N + +
Sbjct: 191 ETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQI-----RAMTEMNGQYCSSR-- 243
Query: 182 VPKELSPDPNRSPL 195
P P N+ PL
Sbjct: 244 -PMRTGPAANKKPL 256
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 86/184 (46%), Gaps = 16/184 (8%)
Query: 5 LGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVF--ADSAVAER 62
L++ + L+ F +G ++ ++ + G+++GFGFV F SAV+ R
Sbjct: 111 FANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSAR 168
Query: 63 VIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDF 122
+ ++ G+ + K + +D++ + + ++V L T+T+
Sbjct: 169 SALHGSMVYGKKLFVAKFINKDERAAM----------AGNQDSTNVYVKNLIETVTDDCL 218
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTF-HELNAKMVEVKRA 181
F Q+GT++ VVVM D R RGFGF+ + + E K + +L +K + V +A
Sbjct: 219 HTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKA 277
Query: 182 VPKE 185
+ K+
Sbjct: 278 LKKD 281
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 6/186 (3%)
Query: 4 DLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERV 63
D +++ + ++ L F +YG V VV+MRD + GR+RGFGFV F + A++
Sbjct: 200 DSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGM-GRSRGFGFVNFCNPENAKKA 258
Query: 64 I--MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXT-KKIFVGGLPSTITES 120
+ + + + + KA+ +D+++ + +Q ++V L ++ E+
Sbjct: 259 MESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNET 318
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVDKVLYKTFHELNAKMVEVK 179
++ F +G I VM H R +GFGF+ + + EE+ Y ++ K + V+
Sbjct: 319 RLREIFGCYGQIVSAKVMC-HENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVR 377
Query: 180 RAVPKE 185
A KE
Sbjct: 378 VAERKE 383
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERV--IM 65
L++ +S NE L+E FG YG+++ +M GR++GFGFV F++ +++ +
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHE-NGRSKGFGFVCFSNCEESKQAKRYL 364
Query: 66 DKHIIDGRTVEAKKAVPRDDQ 86
+ ++DG+ + + A ++D+
Sbjct: 365 NGFLVDGKPIVVRVAERKEDR 385
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 73/152 (48%), Gaps = 13/152 (8%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
KLF+G I +E L F ++ V EV I++D++T +RG F++ A++++
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 67 KHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKYF 126
H KK +P + + K+FVG LP ++E++ + F
Sbjct: 79 CH--------NKKTLPGAN----SLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLF 126
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 158
++GTI D+ ++ Q +G F+ Y+++E
Sbjct: 127 SKYGTIKDLQILRGAQ-QTSKGCAFLKYETKE 157
>AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376710-1379275 REVERSE
LENGTH=439
Length = 439
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 73/152 (48%), Gaps = 13/152 (8%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
KLF+G I +E L F ++ V EV I++D++T +RG F++ A++++
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 67 KHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKYF 126
H KK +P + + K+FVG LP ++E++ + F
Sbjct: 79 CH--------NKKTLPGAN----SLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLF 126
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 158
++GTI D+ ++ Q +G F+ Y+++E
Sbjct: 127 SKYGTIKDLQILRGAQ-QTSKGCAFLKYETKE 157
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
Query: 8 LFIGGISWDTNEEHLKEYFG-KYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+F+G ++ D ++ L E F KY V ++ D TGR++G+GFV F D + +
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 260
Query: 65 MDKHIIDGRTVEAKKAVPRD----DQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITES 120
M+ R + A PR QQ IFVGGL S++T+
Sbjct: 261 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDE 320
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY----DSEEAVDKV 163
D K+ F +FG I V + +G GF+ + ++EEA++K+
Sbjct: 321 DLKQPFSEFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEKL 361
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 21/180 (11%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
+++IG I E L + ++G V +V +M D+ +GR+R FGF A V+
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVV-- 134
Query: 67 KHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTK---------KIFVGGLPSTI 117
++G TVE R+ + N+ + ++ K++VG L T+
Sbjct: 135 -EKLNGNTVEG-----REIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTV 188
Query: 118 TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVE 177
T+ + F + G + V T + GFGF+T+ SEE V+ + LN ++E
Sbjct: 189 TKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA----LNNSLLE 244
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 106 KKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLY 165
+++++G +P T+T K ++ G + V VMYD + R R FGF T S E + V+
Sbjct: 76 RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVE 135
Query: 166 KTFHELNAKMVE 177
K LN VE
Sbjct: 136 K----LNGNTVE 143
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 21/180 (11%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
+++IG I E L + ++G V +V +M D+ +GR+R FGF A V+
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVV-- 134
Query: 67 KHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTK---------KIFVGGLPSTI 117
++G TVE R+ + N+ + ++ K++VG L T+
Sbjct: 135 -EKLNGNTVEG-----REIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTV 188
Query: 118 TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVE 177
T+ + F + G + V T + GFGF+T+ SEE V+ + LN ++E
Sbjct: 189 TKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA----LNNSLLE 244
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 106 KKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLY 165
+++++G +P T+T K ++ G + V VMYD + R R FGF T S E + V+
Sbjct: 76 RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVE 135
Query: 166 KTFHELNAKMVE 177
K LN VE
Sbjct: 136 K----LNGNTVE 143
>AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:11695350-11696563 REVERSE LENGTH=116
Length = 116
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 7/88 (7%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD- 66
LF+ GIS+ + EE L + F +YG+V++V ++ D++ R +GF +V F+ AE+ +++
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 67 -KHIIDGR-----TVEAKKAVPRDDQQN 88
++DGR T +A K P D + N
Sbjct: 83 NAQLVDGRVVILDTTKAAKHNPPDTKPN 110
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 108 IFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKT 167
+FV G+ + TE + F Q+G + V V+ D RP+GF ++T+ S+E +K L
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALL-- 80
Query: 168 FHELNAKMVE 177
ELNA++V+
Sbjct: 81 --ELNAQLVD 88
>AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21806622-21807012 FORWARD LENGTH=100
Length = 100
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+++ G+ W T E L YF ++GE++ ++ D T R++GFGFV F + A R +
Sbjct: 10 KIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACEN 69
Query: 67 -KHIIDGRTVEAKKA 80
H IDGRTV K A
Sbjct: 70 PNHTIDGRTVNCKLA 84
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
KI+V GLP YF++FG I V+ D TQR +GFGF+T+ E+ +
Sbjct: 10 KIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACEN 69
Query: 167 TFHELNAKMVEVKRA 181
H ++ + V K A
Sbjct: 70 PNHTIDGRTVNCKLA 84
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
++++G +S T ++ L+E F YG V++ ++MRDR T R+RGFGFV ++ + AE +
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 65 MDKHIIDGRTVEAK 78
MD ++GR V K
Sbjct: 64 MDGKELNGRRVSVK 77
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE-EAVDKVLY 165
+++VG L T T+ ++ F +G + D +VM D T R RGFGF+TY S EA V
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 166 KTFHELNAKMVEVK 179
ELN + V VK
Sbjct: 64 MDGKELNGRRVSVK 77
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI 64
+ F+GG++W TN+E L+ F ++G+VI+ I+ DR +GR+RGFGFV F D I
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160
+ FVGGL + D ++ F QFG + D ++ D + R RGFGF+T+ E+A+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
>AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2199653-2201150 REVERSE LENGTH=317
Length = 317
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 5 LGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI 64
+ K+F+G ++W T + L+ YF ++G+V++ ++ + GR++G+GF+ F D R +
Sbjct: 11 VTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRAL 70
Query: 65 MD-KHIIDGRTVEAKKA 80
+ K IIDGRT A
Sbjct: 71 QNSKPIIDGRTTNCNLA 87
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 9/158 (5%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMDK 67
L+IG + + +E +L F + GE++ V ++R+++TG+ G+GF+ F A AER +
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTL--- 82
Query: 68 HIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKYFD 127
+G + + R +N IFVG L +T+ ++ F
Sbjct: 83 QTYNGTQMPGTELTFR-----LNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFR 137
Query: 128 -QFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
+ ++ V+ D +T R +G+GF+ + E ++ +
Sbjct: 138 VHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAM 175
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 9/158 (5%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMDK 67
L+IG + + +E +L F + GE++ V ++R+++TG+ G+GF+ F A AER +
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTL--- 82
Query: 68 HIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKYFD 127
+G + + R +N IFVG L +T+ ++ F
Sbjct: 83 QTYNGTQMPGTELTFR-----LNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFR 137
Query: 128 -QFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
+ ++ V+ D +T R +G+GF+ + E ++ +
Sbjct: 138 VHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAM 175
>AT1G16610.3 | Symbols: SR45 | arginine/serine-rich 45 |
chr1:5675925-5678686 REVERSE LENGTH=425
Length = 425
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAER--VIM 65
L + +S + NE HLKE FG +GEVI V I DR RG G+V F A AE+ + M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 66 DKHIIDGRTVEA 77
D IDG+ V+A
Sbjct: 160 DGAQIDGKVVKA 171
>AT1G16610.1 | Symbols: SR45, RNPS1 | arginine/serine-rich 45 |
chr1:5675925-5678686 REVERSE LENGTH=414
Length = 414
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAER--VIM 65
L + +S + NE HLKE FG +GEVI V I DR RG G+V F A AE+ + M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 66 DKHIIDGRTVEA 77
D IDG+ V+A
Sbjct: 160 DGAQIDGKVVKA 171
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
| chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
K+F+GG+S T+ E LKE FG +G++++ V++ DR +G +RGFGFV + VA +
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 65 MDKHIIDGRTV 75
M +DGR +
Sbjct: 97 MQNKELDGRII 107
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 107 KIFVGGL-PSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLY 165
KIFVGGL PST E K+ F FG I D VV+ D + RGFGF+TYDS E + +
Sbjct: 37 KIFVGGLSPSTDVEL-LKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 166 KTFH-ELNAKMVEVKRA 181
+ EL+ +++ V A
Sbjct: 96 AMQNKELDGRIIGVHPA 112
>AT1G16610.2 | Symbols: SR45, RNPS1 | arginine/serine-rich 45 |
chr1:5675925-5678686 REVERSE LENGTH=407
Length = 407
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAER--VIM 65
L + +S + NE HLKE FG +GEVI V I DR RG G+V F A AE+ + M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 66 DKHIIDGRTVEA 77
D IDG+ V+A
Sbjct: 160 DGAQIDGKVVKA 171
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 4/162 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+L++ I + L + F +G VI V + R+ TG +RG G+V A+ I
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIAS 168
Query: 65 MDKHIIDGRTVEAKKAVPRD--DQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDF 122
+D + GR + + +V + ++N K++VG LP
Sbjct: 169 LDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGL 228
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
+ +F +FGTI V++D T R R F F+++ S E D L
Sbjct: 229 RNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL 270
>AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9392397-9393545 REVERSE LENGTH=382
Length = 382
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD- 66
+F+ G+ WDT E+LK F YGE+ E ++ D+ TGRA+GFGFV+F A + +
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNP 224
Query: 67 KHIIDGRTVEAKKA------VPRDDQQNV 89
+ + RTV A PR+ QQ V
Sbjct: 225 EKRMYNRTVSCLPARPFNSGKPREQQQPV 253
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 91/202 (45%), Gaps = 15/202 (7%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADS-AVA 60
E D +F I+ E + E+F + G+V +V I+ DR++ R+RG G+V F D+ +V
Sbjct: 227 ERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVP 286
Query: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXX-----XTKKIFVGGLPS 115
+ + + G+ V K P + ++N+ + ++++VG L
Sbjct: 287 MAIALSGQPLLGQPVMVK---PSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHI 343
Query: 116 TITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKM 175
++E D +K F+ FG++ V V D T +GFGF+ + E L LN ++
Sbjct: 344 NMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNAL-----NLNGQL 397
Query: 176 VEVKRAVPKELSPDPNRSPLIG 197
RA+ D P G
Sbjct: 398 EIAGRAIKVSAVTDQTEVPEAG 419
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 92/223 (41%), Gaps = 27/223 (12%)
Query: 8 LFIGGISWDTNEEHLKEYF-GKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+F+G ++ D ++ L E F G+Y V ++ D TGR++G+GFV F D R +
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTE 274
Query: 65 MDKHIIDGRTVEAKKAVPRDD----QQNVNRQXXXX-------XXXXXXXXTKKIFVGGL 113
M+ R + A P+ QQN ++ IFVGGL
Sbjct: 275 MNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGL 334
Query: 114 PSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV---LYKTFHE 170
+ +TE D + F FG + V + +G GF+ + + ++ ++ L T
Sbjct: 335 DADVTEEDLMQPFSDFGEVVSVKIPVG------KGCGFVQFANRQSAEEAIGNLNGTVIG 388
Query: 171 LNAKMVEVKRAVPKELSPDPNRSPLIGYNYGLNRASSYLNIYA 213
N + R+ K+ D +N G +R Y N YA
Sbjct: 389 KNTVRLSWGRSPNKQWRSDSGNQ----WNGGYSRGQGYNNGYA 427
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 91/202 (45%), Gaps = 15/202 (7%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADS-AVA 60
E D +F I+ E + E+F + G+V +V I+ DR++ R+RG G+V F D+ +V
Sbjct: 178 ERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVP 237
Query: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXX-----XTKKIFVGGLPS 115
+ + + G+ V K P + ++N+ + ++++VG L
Sbjct: 238 MAIALSGQPLLGQPVMVK---PSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHI 294
Query: 116 TITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKM 175
++E D +K F+ FG++ V V D T +GFGF+ + E L LN ++
Sbjct: 295 NMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNAL-----NLNGQL 348
Query: 176 VEVKRAVPKELSPDPNRSPLIG 197
RA+ D P G
Sbjct: 349 EIAGRAIKVSAVTDQTEVPEAG 370
>AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22171332-22172656 FORWARD LENGTH=156
Length = 156
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI--M 65
LF+ G+S T E L+ F ++GEV + ++ DR++G ++GFGFV +A + + I M
Sbjct: 58 LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGM 117
Query: 66 DKHIIDGRTVEAKKAVPRDDQQNVNRQ 92
D +DG + A+ A PR+ Q+ Q
Sbjct: 118 DGKFLDGWVIFAEYARPREQSQSYQPQ 144
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYG--EVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI 64
KL+ G + ++ + L + + E++EV+ RD TG++RGF FV ++ +I
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRD--TGQSRGFAFVTMSNVEDCNIII 143
Query: 65 --MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDF 122
+D GR ++ A D+ N++ K+FVG L T+T
Sbjct: 144 DNLDGTEYLGRALKVNFA----DKPKPNKEPLYPETE------HKLFVGNLSWTVTSESL 193
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
F + G + V++D +T R RG+GF+ Y S+ ++ L
Sbjct: 194 AGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETAL 235
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
KLF+G +SW E L F + G+V+ ++ D TGR+RG+GFV ++ A E +
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 65 MDKHIIDGRTVEAKKA 80
+D ++GR + A
Sbjct: 238 LDGFELEGRAIRVNLA 253
>AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=294
Length = 294
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 5/163 (3%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEV-VIMRDRLTGRARGFGFVVFADSAVAERVI- 64
+L++ I + L + F +G VI V V+ R+ TG +RG G+V A+ I
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIA 168
Query: 65 -MDKHIIDGRTVEAKKAVPRD--DQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESD 121
+D + GR + + +V + ++N K++VG LP
Sbjct: 169 SLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDG 228
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
+ +F +FGTI V++D T R R F F+++ S E D L
Sbjct: 229 LRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL 271
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 25/171 (14%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI--M 65
+F+G +S + + L + F + + +M D+ TGR+RGFGFV F + A+ I M
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
Query: 66 DKHIIDGRTVEA----KKAVPRDDQQNVNRQXXXXXXXXXXXXTKK-------------- 107
+ + R + K A DD+ + + + K+
Sbjct: 206 NGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENNSQFT 265
Query: 108 -IFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157
++VG L +T+ D +YF G V+ + QR +GFGF+ Y++
Sbjct: 266 TVYVGNLAPEVTQLDLHRYFHALG----AGVIEEVRVQRDKGFGFVRYNTH 312
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 25/181 (13%)
Query: 3 SDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAER 62
S +++G I E L+E F G V ++R + +GFV + D A
Sbjct: 56 STCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS----YGFVHYFDRRSAAL 111
Query: 63 VIMD---KHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITE 119
I+ +H+ G+ ++ A +++ + IFVG L +T+
Sbjct: 112 AILSLNGRHLF-GQPIKVNWAYATGQREDTSSHF-------------NIFVGDLSPEVTD 157
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVK 179
+ + F F + +D VM+D T R RGFGF+++ +++ + +E+N K + +
Sbjct: 158 ATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAI----NEMNGKWLSSR 213
Query: 180 R 180
+
Sbjct: 214 Q 214
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 5/154 (3%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFAD-SAVA 60
E D +F + E + E+F K G+V +V ++ DR + R++G G++ F D +V
Sbjct: 164 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVP 223
Query: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITES 120
+ + + G+ V K P + ++N+ Q +K++VG L ++E
Sbjct: 224 MAIALSGQLFLGQPVMVK---PSEAEKNLA-QSNSTTVGGTGPADRKLYVGNLHFNMSEL 279
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY 154
++ F+ FG + V + D T + +GFGFI +
Sbjct: 280 QLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 4/152 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
KLF+G + E L F ++ V EV I++++ T RG F+ A++VI
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 67 KHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKYF 126
H + +T+ + P + K+FVG LP ++E++ + F
Sbjct: 73 FH--NKKTLPGASS-PLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLF 129
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 158
++GTI D+ ++ + Q +G F+ Y+S+E
Sbjct: 130 SEYGTIKDLQILRG-SLQTSKGCLFLKYESKE 160
>AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:2829341-2834189 FORWARD LENGTH=690
Length = 690
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 4 DLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFA--DSAVAE 61
D G+LF+ G+ + T EE L E+F K+G++ EV ++ D+ T RG FV++ +SA
Sbjct: 225 DAGRLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMA 284
Query: 62 RVIMDKHIIDGRTVEAKKAVPR 83
+DK GRT+ A PR
Sbjct: 285 MDKLDKLPFQGRTLHILPAKPR 306
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+L++G +SW ++ L+ F + G+V+E ++ DR +GR++GFGFV + S ++ I
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 65 MDKHIIDGRTVEAKKAVPR 83
++ +DGR + +A R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+L++G +SW ++ L+ F + G+V+E ++ DR +GR++GFGFV + S ++ I
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 65 MDKHIIDGRTVEAKKAVPR 83
++ +DGR + +A R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+L++G +SW ++ L+ F + G+V+E ++ DR +GR++GFGFV + S ++ I
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 65 MDKHIIDGRTVEAKKAVPR 83
++ +DGR + +A R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+L++G +SW ++ L+ F + G+V+E ++ DR +GR++GFGFV + S ++ I
Sbjct: 279 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 338
Query: 65 MDKHIIDGRTVEAKKAVPR 83
++ +DGR + +A R
Sbjct: 339 LNGADLDGRQIRVSEAEAR 357
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 8 LFIGGISWDTNEEHLKEYF-GKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
+F+G ++ D + L E F Y V ++ DR+TGR +G+GFV F+D + R + +
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 67 KHIIDGRT-------VEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITE 119
+ + T +KK V Q++ + +FVGGL +++T+
Sbjct: 217 MNGVPCSTRPMRIGPAASKKGV--TGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTD 274
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRG--FGFITYDSEEAVDKVL 164
K F Q+G I V + P G GF+ + + ++ L
Sbjct: 275 DHLKNVFSQYGEIVHVKI--------PAGKRCGFVQFSEKSCAEEAL 313
>AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 3 SDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAER 62
SD L + I++ T + L F KYG+V++V I RDR TG +RGF FV + A +
Sbjct: 13 SDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHK 72
Query: 63 VI--MDKHIIDGRTV 75
+ +D ++DGR +
Sbjct: 73 AVERLDGRVVDGREI 87
>AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 3 SDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAER 62
SD L + I++ T + L F KYG+V++V I RDR TG +RGF FV + A +
Sbjct: 13 SDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHK 72
Query: 63 VI--MDKHIIDGRTV 75
+ +D ++DGR +
Sbjct: 73 AVERLDGRVVDGREI 87
>AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8383856-8386604 FORWARD LENGTH=613
Length = 613
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVF 54
+F+ G WDT +E+LK F YGE+ E ++ D+ TGR +G+GFV+F
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMF 456
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 76/176 (43%), Gaps = 25/176 (14%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD- 66
++ G I E L+E F G + ++R + +GFV + D A IM
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFDRRCASMAIMTL 120
Query: 67 --KHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKK 124
+HI G+ ++ A +++ + IFVG L +T++
Sbjct: 121 NGRHIF-GQPMKVNWAYATGQREDTSSHF-------------NIFVGDLSPEVTDAALFD 166
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKR 180
F F + +D VM+D T R RGFGF+++ +++ + +E+N K V ++
Sbjct: 167 SFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAI----NEMNGKWVSSRQ 218
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 71/176 (40%), Gaps = 33/176 (18%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI--- 64
+F+G +S + + L + F + + +M D+ TGR+RGFGFV F + A+ I
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 209
Query: 65 ----------------------MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXX 102
DKH DG++V +D R+
Sbjct: 210 NGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSED----GRELSNEDAPENN 265
Query: 103 XXTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 158
++VG L +T+ D + F G V+ + QR +GFGF+ Y++ +
Sbjct: 266 PQFTTVYVGNLSPEVTQLDLHRLFYTLG----AGVIEEVRVQRDKGFGFVRYNTHD 317
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
++++G +SW ++ L+ F + G+V+E ++ DR +GR++GFGFV + S + I
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 65 MDKHIIDGRTVEAKKAVPR 83
+D +DGR + +A R
Sbjct: 265 LDGADLDGRQIRVSEAEAR 283
>AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |
chr1:26999606-27001850 FORWARD LENGTH=461
Length = 461
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFAD--SAVAERVIM 65
+F+G I +D EE L+E G+ G V+ ++ DR TG+ +G+GF + D +A++ R +
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 66 DKHIIDGRTV 75
+ I+GR +
Sbjct: 71 QSYEINGRQL 80
>AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9388571-9390450 REVERSE LENGTH=343
Length = 343
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+ G+ W+T E L F YGE+ E ++ D+ TG+A+GFGFV+F A+ + +
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 67 -KHIIDGRTVEAKKA 80
K I RT + A
Sbjct: 165 PKKRILNRTATCQLA 179
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 25/171 (14%)
Query: 3 SDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAER 62
S +++G I E L+E F G V ++R + +GFV + D A
Sbjct: 51 STCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGL 106
Query: 63 VIMD---KHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITE 119
I+ +H+ G+ ++ A +++ + IFVG L +T+
Sbjct: 107 AILSLNGRHLF-GQPIKVNWAYASGQREDTSSHF-------------NIFVGDLSPEVTD 152
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY----DSEEAVDKVLYK 166
+ F + T +D VM+D T R RGFGF+++ D++ A+D++ K
Sbjct: 153 AMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGK 203
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 55.1 bits (131), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 105 TKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
+ ++FV L + T+ ++ F FG I + ++ D TQRP+GFGFIT+DSE+ K L
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Query: 165 YKTFHELNAKMVE 177
L+ K+V+
Sbjct: 66 ----KSLDGKIVD 74
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 6 GKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI- 64
+LF+ +S T ++ L++ F +G++ E ++RD T R +GFGF+ F A + +
Sbjct: 7 AQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALK 66
Query: 65 -MDKHIIDGRTV 75
+D I+DGR +
Sbjct: 67 SLDGKIVDGRLI 78
>AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9389407-9390450 REVERSE LENGTH=347
Length = 347
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
K+F+ G+ W+T E L F YGE+ E ++ D+ TG+A+GFGFV+F A+ + +
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 67 -KHIIDGRTVEAKKA 80
K I RT + A
Sbjct: 165 PKKRILNRTATCQLA 179
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 25/171 (14%)
Query: 3 SDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAER 62
S +++G I E L+E F G V ++R + +GFV + D A
Sbjct: 51 STCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGL 106
Query: 63 VIMD---KHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITE 119
I+ +H+ G+ ++ A +++ + IFVG L +T+
Sbjct: 107 AILSLNGRHLF-GQPIKVNWAYASGQREDTSSHF-------------NIFVGDLSPEVTD 152
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY----DSEEAVDKVLYK 166
+ F + T +D VM+D T R RGFGF+++ D++ A+D++ K
Sbjct: 153 AMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGK 203
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 69/176 (39%), Gaps = 35/176 (19%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI--- 64
+F+G +S + + L F Y + +M D+ TGR+RGFGFV F + A+ I
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 65 ----------------------MDKHIIDGRTV-EAKKAVPRDDQQNVNRQXXXXXXXXX 101
DK D ++V E V D + N +
Sbjct: 201 TGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGVSEDGKDTTNGEAPENNAQYT 260
Query: 102 XXXTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157
++VG L +++ D ++F G V+ + QR +GFGF+ Y +
Sbjct: 261 T-----VYVGNLAPEVSQVDLHRHFHSLG----AGVIEEVRVQRDKGFGFVRYSTH 307
>AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like 1 |
chr1:18098186-18101422 FORWARD LENGTH=557
Length = 557
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-MD 66
LF +S++ ++ +F + GEV++V +R G RGFG V FA S A++ +
Sbjct: 299 LFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALEFH 358
Query: 67 KHIIDGRTVE---AKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFK 123
+ GR + A++ R ++ Q KKIFV G ++++E D K
Sbjct: 359 GRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDASLSEDDIK 418
Query: 124 ----KYFDQFGTITDVVVMYDHNTQRPRGFGFITY 154
++F G I +V V D +T +G ++ +
Sbjct: 419 NTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF 453
>AT3G54770.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:20273863-20275731 REVERSE LENGTH=218
Length = 218
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 22 LKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMDK-HIIDGRTVEAKKA 80
+ ++F KYG+++E VI+ D+LT R++G+GFV F D+ A R D II+GR A
Sbjct: 1 MYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRRANCNLA 60
>AT5G04810.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:1390049-1393760 FORWARD LENGTH=952
Length = 952
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMY-DHNTQRPRGFGFITYDSEEAVDKVLY 165
KIFVG LP+ I + +F+++F QFG I +V+++ H ++ GFGFI Y +E++ K +
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAVE 225
Query: 166 KTFHELNAKMVEVK 179
E + +++ VK
Sbjct: 226 FDGVEFHGRILTVK 239
>AT2G16940.3 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=599
Length = 599
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 91/211 (43%), Gaps = 24/211 (11%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVI---------EVVIMRDRLTGRARGFGFV 52
E D +F I+ E + E+F + G+V +V I+ DR++ R+RG G+V
Sbjct: 207 ERDQRTVFAYQIALRATERDVYEFFSRAGKVCPFLCRFHVRDVRIIMDRISRRSRGIGYV 266
Query: 53 VFADS-AVAERVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXX-----TK 106
F D+ +V + + + G+ V K P + ++N+ + +
Sbjct: 267 EFYDTMSVPMAIALSGQPLLGQPVMVK---PSEAEKNLVQSTTAAAGAGGMLGPYSGGAR 323
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYK 166
+++VG L ++E D +K F+ FG++ V V D T +GFGF+ + E L
Sbjct: 324 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNAL-- 380
Query: 167 TFHELNAKMVEVKRAVPKELSPDPNRSPLIG 197
LN ++ RA+ D P G
Sbjct: 381 ---NLNGQLEIAGRAIKVSAVTDQTEVPEAG 408
>AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like 2
| chr3:6404270-6407822 REVERSE LENGTH=636
Length = 636
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 104/239 (43%), Gaps = 27/239 (11%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLT----GRARGFGFVVFADSAVAERV 63
LF G +S+ ++ +F + GEV++V RL+ G +G+G + FA A++
Sbjct: 386 LFAGNLSYQIARSDIENFFKEAGEVVDV-----RLSSFDDGSFKGYGHIEFASPEEAQKA 440
Query: 64 I-MDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDF 122
+ M+ ++ GR V A R +N N ++ I+V G S++ E +
Sbjct: 441 LEMNGKLLLGRDVRLDLANERGTPRNSN-----PGRKGEGSQSRTIYVRGFSSSLGEDEI 495
Query: 123 KK----YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEV 178
KK +F + G +T V V D T RGF +I S D+ L + E+ + V
Sbjct: 496 KKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTS--GFDEALQLSGSEIGGGNIHV 553
Query: 179 KRAVPKELSP--DPNRSPLIGYNYGLNRASSYLNIYAQGYSMSPIGGHGVR--MNGRFS 233
+ + P++ NR+P G G R S + +P G H R GRFS
Sbjct: 554 EESRPRDSDEGRSSNRAPARGAPRG--RHSDRAPRGGRFSDRAPRGRHSDRGAPRGRFS 610
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 10/138 (7%)
Query: 8 LFIGGISWDTNEEHLKEYF-GKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
+F+G ++ D + L E F Y V ++ DR+TGR +G+GFV F+D + R + +
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 67 KHIIDGRT-------VEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITE 119
+ + T +KK V Q++ + +FVGGL +++T+
Sbjct: 217 MNGVPCSTRPMRIGPAASKKGV--TGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTD 274
Query: 120 SDFKKYFDQFGTITDVVV 137
K F Q+G I V +
Sbjct: 275 DHLKNVFSQYGEIVHVKI 292
>AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 33/149 (22%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVF--ADSAVAERVIM 65
L++G ++ +T E L E FG+YG++ + + +RGF F+ + + AVA + +
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVY------SSRGFAFIYYRHVEEAVAAKEAL 73
Query: 66 DKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKY 125
++G ++ + A P K ++VGG+ +++ D ++
Sbjct: 74 QGANLNGSQIKIEYARP-------------------AKPCKSLWVGGIGPNVSKDDLEEE 114
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITY 154
F +FG I D + R R FI Y
Sbjct: 115 FSKFGKIEDFRFL------RERKTAFIDY 137
>AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 33/149 (22%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVF--ADSAVAERVIM 65
L++G ++ +T E L E FG+YG++ + + +RGF F+ + + AVA + +
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVY------SSRGFAFIYYRHVEEAVAAKEAL 73
Query: 66 DKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKY 125
++G ++ + A P K ++VGG+ +++ D ++
Sbjct: 74 QGANLNGSQIKIEYARP-------------------AKPCKSLWVGGIGPNVSKDDLEEE 114
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITY 154
F +FG I D + R R FI Y
Sbjct: 115 FSKFGKIEDFRFL------RERKTAFIDY 137
>AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 33/149 (22%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVF--ADSAVAERVIM 65
L++G ++ +T E L E FG+YG++ + + +RGF F+ + + AVA + +
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVY------SSRGFAFIYYRHVEEAVAAKEAL 73
Query: 66 DKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKY 125
++G ++ + A P K ++VGG+ +++ D ++
Sbjct: 74 QGANLNGSQIKIEYARP-------------------AKPCKSLWVGGIGPNVSKDDLEEE 114
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITY 154
F +FG I D + R R FI Y
Sbjct: 115 FSKFGKIEDFRFL------RERKTAFIDY 137
>AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=858
Length = 858
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 33/149 (22%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVF--ADSAVAERVIM 65
L++G ++ +T E L E FG+YG++ + + +RGF F+ + + AVA + +
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVY------SSRGFAFIYYRHVEEAVAAKEAL 73
Query: 66 DKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKY 125
++G ++ + A P K ++VGG+ +++ D ++
Sbjct: 74 QGANLNGSQIKIEYARP-------------------AKPCKSLWVGGIGPNVSKDDLEEE 114
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITY 154
F +FG I D + R R FI Y
Sbjct: 115 FSKFGKIEDFRFL------RERKTAFIDY 137
>AT2G47310.1 | Symbols: | flowering time control protein-related /
FCA gamma-related | chr2:19423791-19426846 FORWARD
LENGTH=512
Length = 512
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 73/159 (45%), Gaps = 14/159 (8%)
Query: 5 LGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFA-----DSAV 59
+ KL++ IS E +++ F KYG V E+++ +D++TG + F+ + ++A+
Sbjct: 109 IAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAI 168
Query: 60 AERVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITE 119
A + ++ G + K +++ + K++V L T+
Sbjct: 169 A--ALTEQFTFPGEMLPVKVRFAEAERERIG------FAPVQLPDNPKLYVRCLNKQTTK 220
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 158
+ + F ++G I D+ + D + + RG+ F+ + +E
Sbjct: 221 MEVNEVFSRYGIIEDIYMALD-DMKICRGYAFVQFSCKE 258
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
+LF+ G+S T E L++ F +G++++ ++ DR +GR++GFGFV +A AE+
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Query: 65 MDKHIIDGRTV 75
M+ +DG +
Sbjct: 95 MNAKFLDGWVI 105
>AT2G43370.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18013431-18015376 FORWARD LENGTH=333
Length = 333
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMDK 67
LF+G +S T E+ L+E KYG + + ++R +TG +RG+GFV + R D
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 68 H--IIDGRTV 75
H +IDGR +
Sbjct: 126 HHSLIDGREI 135
>AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:2257732-2260101 REVERSE LENGTH=382
Length = 382
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI--M 65
L++ G+S E L+++F K G+V +V ++ D T +RGFGF+ A R I +
Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 136
Query: 66 DKHIIDGRTVEAKKA 80
D ++ GR + +KA
Sbjct: 137 DHSVLQGRVITVEKA 151
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVF--ADSAVAERVI 64
KL+IGG+S T+E LK+ F + V E +M +++TGR+RG+GFV F DSA +
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 65 MDKHIIDG 72
M+ ++G
Sbjct: 92 MNGQELNG 99
>AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18432902-18436629 FORWARD LENGTH=809
Length = 809
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 23/153 (15%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
++F+G + +EE LK+ FG GEV EV I+++ T +++G F+ FA A+R + +
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Query: 67 KHIIDGRTVEAKKAVPRDDQQNVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDFKKYF 126
+ + KK Q N +FVG + T ++
Sbjct: 275 ---LKSPMINGKKCGVTASQDN-----------------DTLFVGNICKIWTPEALREKL 314
Query: 127 DQFGT--ITDVVVMYD-HNTQRPRGFGFITYDS 156
+G + D+ ++ D +N RG+ F+ + S
Sbjct: 315 KHYGVENMDDITLVEDSNNVNMNRGYAFLEFSS 347
>AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9270114-9270597 REVERSE LENGTH=117
Length = 117
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMDK 67
F+ G+ DT+E+ L + F K+G VI+ I+ DR TG++R FGFV F + IM
Sbjct: 9 CFVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIM 68
Query: 68 HIIDGRT 74
+ + R+
Sbjct: 69 DVEESRS 75
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 108 IFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV-DKVLYK 166
FV GL E D F +FG + D ++YD +T + R FGF+T++ E+++ D ++
Sbjct: 9 CFVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIM 68
Query: 167 TFHELNAKMVEV 178
E +K V V
Sbjct: 69 DVEESRSKCVNV 80
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAE 61
E D L+IG + ++ L F +GE++ +++DR+TG ++G+GFV +AD +A
Sbjct: 476 EYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMAN 535
Query: 62 RVI--MDKHIIDGRTVEAKKA 80
+ M+ + +GRT+ + A
Sbjct: 536 TAVQAMNGYRFEGRTLAVRIA 556
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAE 61
E D L+IG + ++ L F +GE++ +++DR+TG ++G+GFV +AD +A
Sbjct: 476 EYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMAN 535
Query: 62 RVI--MDKHIIDGRTVEAKKA 80
+ M+ + +GRT+ + A
Sbjct: 536 TAVQAMNGYRFEGRTLAVRIA 556
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 2 ESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAE 61
E D L+IG + ++ L F +GE++ +++DR+TG ++G+GFV +AD +A
Sbjct: 476 EYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMAN 535
Query: 62 RVI--MDKHIIDGRTVEAKKA 80
+ M+ + +GRT+ + A
Sbjct: 536 TAVQAMNGYRFEGRTLAVRIA 556
>AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:27643801-27645386 REVERSE LENGTH=181
Length = 181
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMD 66
KL++ G+S+ T E+ L++ F ++G +I + ++ D++ R +GF F+ + A + I
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 67 KH--IIDGRTVEAKKAVPRDD 85
H +DGR + ++A R D
Sbjct: 138 MHGKFLDGRVIFVEEAKTRSD 158
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 107 KIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLY- 165
K++V GL TE + F+QFG + + ++ D RP+GF F+ Y++EE K +
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 166 ---------KTFHELNAKMVEVKRAVPKELSPDPNRSP 194
F E ++ RA P+ P P P
Sbjct: 138 MHGKFLDGRVIFVEEAKTRSDMSRAKPRRDFPKPQSKP 175
>AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7331739-7333749 FORWARD LENGTH=374
Length = 374
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 7 KLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVI-- 64
KLFI G+S+ T+E+ L+ F +GE++EV I+ D+++ R++G+ F+ + A +
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342
Query: 65 MDKHIIDGRTVEAKKAVPRDDQQN 88
M+ II+G + A + +QN
Sbjct: 343 MNGKIINGWMIVVDVAKTKPFRQN 366
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 105 TKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
TKK+F+ GL +E + F+ FG + +V ++ D ++R +G+ F+ Y +EEA L
Sbjct: 281 TKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTAL 340
Query: 165 YKTFHELNAKMV 176
E+N K++
Sbjct: 341 ----KEMNGKII 348
>AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17426114 FORWARD LENGTH=310
Length = 310
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 15/163 (9%)
Query: 8 LFIGGISWDTNEEHLKEYF--GKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIM 65
+++G + +E +L F G E++ V ++R++ G + G+GFV F VA++V+
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 66 DKHIIDGRTVEAKKAVPRDDQQ---NVNRQXXXXXXXXXXXXTKKIFVGGLPSTITESDF 122
+ +G T +P DQ N IFVG L ++++
Sbjct: 163 E---FNGTT------MPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLL 213
Query: 123 KKYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
+ F +++ ++ V+ D NT R +G+GF+ + E K +
Sbjct: 214 HETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE LENGTH=352
Length = 352
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 35/50 (70%)
Query: 8 LFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADS 57
+++GGI +D E L F +YGE+++V ++RD+ TG+++GF F+ + D
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQ 87
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 108 IFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160
++VGG+P +TE D F Q+G I DV ++ D T + +GF F+ Y+ + +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRST 90