Miyakogusa Predicted Gene

Lj6g3v0792110.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0792110.1 tr|G7K9J0|G7K9J0_MEDTR Disease resistance protein
RPP8 OS=Medicago truncatula GN=MTR_5g027860 PE=4
S,40.4,2e-19,RNI-like,NULL; seg,NULL; no description,NULL,CUFF.58276.1
         (149 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07040.1 | Symbols: RPM1, RPS3 | NB-ARC domain-containing dis...    54   4e-08

>AT3G07040.1 | Symbols: RPM1, RPS3 | NB-ARC domain-containing
           disease resistance protein | chr3:2226244-2229024
           REVERSE LENGTH=926
          Length = 926

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 4/105 (3%)

Query: 47  EQGSTLCSSISKMRQLEKLHIAT--EGEVIDLHHFISPLRMLRNLFLCGKMNKIPKLVPE 104
           E G  LC S++K++++  L + +  E E +++   I+    +  LFL GK+ ++P     
Sbjct: 719 EHGRDLCDSLNKIKRIRFLSLTSIDEEEPLEIDDLIATAS-IEKLFLAGKLERVPSWFNT 777

Query: 105 LQNLVALYLGSYKLTDEPLESLQNMPNLLYLHLFDHSYEGKTLHF 149
           LQNL  L L   +L +  + S+Q +P L++L  ++ +Y G  L F
Sbjct: 778 LQNLTYLGLRGSQLQENAILSIQTLPRLVWLSFYN-AYMGPRLRF 821