Miyakogusa Predicted Gene

Lj6g3v0774920.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0774920.2 Non Chatacterized Hit- tr|B9SAJ5|B9SAJ5_RICCO
Putative uncharacterized protein OS=Ricinus communis G,52.78,3e-17,Ran
BP2/NZF zinc finger-like,NULL; ZF_RANBP2_2,Zinc finger, RanBP2-type;
WLM,WLM; ZF_RANBP2_1,Zinc f,CUFF.58231.2
         (413 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55915.1 | Symbols:  | zinc ion binding | chr1:20907663-20909...   385   e-107
AT5G35690.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: WLM (Inter...    63   3e-10

>AT1G55915.1 | Symbols:  | zinc ion binding | chr1:20907663-20909429
           FORWARD LENGTH=404
          Length = 404

 Score =  385 bits (989), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/415 (50%), Positives = 255/415 (61%), Gaps = 18/415 (4%)

Query: 2   NSGDLNKVWEINALKRKPRPEEATKMLEKIAKQVQPIMRKHNWRVKLLSEFCPSNPXXXX 61
           N  DLNKVWEI ALKRKPR +EA K+LEK+A QVQPIM +  WRVKLLSEFCP+NP    
Sbjct: 5   NLEDLNKVWEIKALKRKPREDEARKILEKVANQVQPIMTRRKWRVKLLSEFCPTNPRLLG 64

Query: 62  XXXXXXXXXKLRLRRPNRDSEFYPFDEVLDTMLHELCHNAHSSHNAAFYKLWDQLRKECE 121
                    KLRLRR N D +F  + E+LDTMLHELCHNAH  HNA+FYKLWD+LRKECE
Sbjct: 65  VNVNRGVQVKLRLRRVNHDLDFLSYHEILDTMLHELCHNAHGPHNASFYKLWDELRKECE 124

Query: 122 ELMAKGITGSGDGFDVPGKRLGGNSRQPPLSSLRKTALAAAEKRSRLGSLLPSGPNRLGG 181
           ELM+KGITG+G GFD+PGKRLGG SRQP LS LR TA  AAEKR R G+LLPSGP RLGG
Sbjct: 125 ELMSKGITGTGQGFDMPGKRLGGLSRQPSLSFLRATAATAAEKRVRAGTLLPSGPQRLGG 184

Query: 182 DSAIMGXXXXXXXXXXXXERRLQDDLWCGSQSCEHSDHENVNNESAENIVQKRKIVGSSR 241
           DS+IM             ERRL DD+WCGSQS +  + E  ++++ +  V  R+   S  
Sbjct: 185 DSSIMSDLSPIQAAAMAAERRLLDDIWCGSQSTDALEDEENDSDTYKEPVSIRETCTS-- 242

Query: 242 LTDNSTLPSDQVSRKRSCSKDSSLPVHSSGAPIFVNLTADAQKIGSITEYQIGSQQRSFG 301
           +   S    +  S   SC   SS   H  G+ + ++LT ++ +I      +   + RS G
Sbjct: 243 VNGKSVKRCNSWSNAHSCPPSSS---HQQGSDV-IDLTEESFEI------RCTKRNRSPG 292

Query: 302 LERIXXXXXXXXXXXXXXXXXXXXXXXXGDNKTFHSEESAMWECPMCTLLNQTFAPICEL 361
            +                            N     EES MWEC  CTLLN + APICEL
Sbjct: 293 DQ---GPSCAKDVPNAGVMKSSIPLPSTSYNANQSREESTMWECAECTLLNPSLAPICEL 349

Query: 362 CGTQQPKDVTTKYSTWSCKFCTLDNSVKMEKCSACDQWRYSHGPPMSV---NLGS 413
           C   +PK+   K+  WSCKFCTL+N VK+EKC AC QWRYS+G P+S    N+G+
Sbjct: 350 CTAAKPKEREMKHKVWSCKFCTLENEVKLEKCEACGQWRYSYGAPLSTGAPNVGT 404


>AT5G35690.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: WLM
           (InterPro:IPR013536), PUB domain (InterPro:IPR018997),
           PUG domain (InterPro:IPR006567); BEST Arabidopsis
           thaliana protein match is: zinc ion binding
           (TAIR:AT1G55915.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:13865027-13868117 REVERSE LENGTH=603
          Length = 603

 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 82/187 (43%), Gaps = 28/187 (14%)

Query: 4   GDLNKVWEINALKRKPRPEEATKMLEKIAKQ--VQPIMRKHNWRVKLLSEFCPSNPXXXX 61
           GD  +  ++  ++  P P  A K +  +A    +  +M KH WRV +++E  P       
Sbjct: 145 GDF-RTLQLPGIELNPPPSAALKRMHMLAADPGIIAVMNKHRWRVGIMTELAPVGYVGVS 203

Query: 62  ------XXXXXXXXXKLRLRRPNRDSEFYPFDEVLDTMLHELCHNAHSSHNAAFYKLWDQ 115
                           LRLR  +    F  +  +  T+LHEL H  ++ H+  FY L  Q
Sbjct: 204 PRCLLGFNKNQGEEISLRLRTDDLKG-FRKYQSIKKTLLHELAHMVYTEHDEKFYALDSQ 262

Query: 116 LRKECEEL---MAKGITGSGDGF--------------DVPGKRLGGNSRQPPLSSLRKTA 158
           L KE E L    ++G T +G  F              +   +RLGGN +   L + R+++
Sbjct: 263 LNKEAESLDWTKSRGHTLNGTKFINDDDEEDYFFDENETVSQRLGGN-QSDNLGNARESS 321

Query: 159 LAAAEKR 165
           +AAA +R
Sbjct: 322 VAAAYRR 328