Miyakogusa Predicted Gene

Lj6g3v0754260.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0754260.1 tr|Q00Y64|Q00Y64_OSTTA Hydroxymethylpyrimidine
kinase (ISS) OS=Ostreococcus tauri GN=Ot12g00960 PE=3,53.75,8e-18,no
description,Nucleotide-binding, alpha-beta plait; RNA recognition
motif,RNA recognition motif
dom,NODE_19222_length_1476_cov_73.412605.path2.1
         (477 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55670.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   165   8e-41
AT5G55670.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   164   1e-40
AT1G13190.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   140   3e-33

>AT5G55670.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:22544669-22546801 REVERSE LENGTH=585
          Length = 585

 Score =  165 bits (417), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 75/99 (75%), Positives = 84/99 (84%), Gaps = 3/99 (3%)

Query: 227 DLHWWTTDAELEAELCKYGQVKEVKFFDEKASGKSKGYCQVEFYEPSAAAACKDGMNEHE 286
           DLHWWTTDAELEAELCKYG VKEVKFFDEKASGKSKGYCQVEFY+P AA+ACKD +N + 
Sbjct: 240 DLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDALNGYP 299

Query: 287 FNGRACVVAYASPFTVKKMGEAQIARNQQGNVNQSAVPQ 325
           FNGR CVV YASP++VK+MGEAQ+ R QQ    QS + Q
Sbjct: 300 FNGRPCVVEYASPYSVKRMGEAQVNRTQQA---QSVIAQ 335



 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 43/63 (68%), Gaps = 1/63 (1%)

Query: 1  MEEGEGGDPMDHFHRNEAISAVADDGFLAEXXXXXXXXX-XXXXXGEGFLQSLRKNDDSA 59
          M+EG+G D MD FH+NEAISAVADDGF+AE               GEGFLQS++KND++ 
Sbjct: 1  MDEGDGRDQMDQFHQNEAISAVADDGFMAEEEDDDYEDLYNDVNVGEGFLQSMKKNDEAG 60

Query: 60 FRN 62
           RN
Sbjct: 61 SRN 63


>AT5G55670.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:22544669-22546801 REVERSE LENGTH=710
          Length = 710

 Score =  164 bits (415), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 75/99 (75%), Positives = 84/99 (84%), Gaps = 3/99 (3%)

Query: 227 DLHWWTTDAELEAELCKYGQVKEVKFFDEKASGKSKGYCQVEFYEPSAAAACKDGMNEHE 286
           DLHWWTTDAELEAELCKYG VKEVKFFDEKASGKSKGYCQVEFY+P AA+ACKD +N + 
Sbjct: 240 DLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDALNGYP 299

Query: 287 FNGRACVVAYASPFTVKKMGEAQIARNQQGNVNQSAVPQ 325
           FNGR CVV YASP++VK+MGEAQ+ R QQ    QS + Q
Sbjct: 300 FNGRPCVVEYASPYSVKRMGEAQVNRTQQA---QSVIAQ 335



 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 403 PPL-MHHQSMMNQGFDPAFGGPIGRMGNYGGFPGAPTPPFSGIMXXXXXXXXXXXXXXXX 461
           PP+ M HQ MM QGF+ AFGGP+ RMG YGGFPGAP P F G++                
Sbjct: 422 PPMNMMHQPMMGQGFEQAFGGPMARMGGYGGFPGAPGPQFPGLLSSFPPVGGVGLPGVAP 481

Query: 462 XXNPAFFGR 470
             NPAFFGR
Sbjct: 482 HVNPAFFGR 490



 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 43/63 (68%), Gaps = 1/63 (1%)

Query: 1  MEEGEGGDPMDHFHRNEAISAVADDGFLAEXXXXXXXXX-XXXXXGEGFLQSLRKNDDSA 59
          M+EG+G D MD FH+NEAISAVADDGF+AE               GEGFLQS++KND++ 
Sbjct: 1  MDEGDGRDQMDQFHQNEAISAVADDGFMAEEEDDDYEDLYNDVNVGEGFLQSMKKNDEAG 60

Query: 60 FRN 62
           RN
Sbjct: 61 SRN 63


>AT1G13190.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:4499633-4501354 FORWARD LENGTH=573
          Length = 573

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 64/98 (65%), Positives = 79/98 (80%)

Query: 227 DLHWWTTDAELEAELCKYGQVKEVKFFDEKASGKSKGYCQVEFYEPSAAAACKDGMNEHE 286
           +LHWWTTDAE+E+ L +YG+VKE+KFFDE+ SGKSKGYCQVEFY+ +AAAACK+GMN   
Sbjct: 208 ELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGMNGFI 267

Query: 287 FNGRACVVAYASPFTVKKMGEAQIARNQQGNVNQSAVP 324
           FNG+ACVVA+ASP T+K+MG     RNQ  N  Q+  P
Sbjct: 268 FNGKACVVAFASPETLKQMGANFTGRNQGQNQIQNRRP 305