Miyakogusa Predicted Gene

Lj6g3v0753110.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0753110.3 Non Chatacterized Hit- tr|G7JY02|G7JY02_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,73.24,1e-18,DUF647,Protein of unknown function DUF647;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,Protein of unk,CUFF.58219.3
         (78 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G13770.1 | Symbols: RUS3 | Protein of unknown function, DUF64...    89   7e-19
AT1G13770.2 | Symbols: RUS3 | Protein of unknown function, DUF64...    86   6e-18

>AT1G13770.1 | Symbols: RUS3 | Protein of unknown function, DUF647 |
           chr1:4721717-4724345 FORWARD LENGTH=440
          Length = 440

 Score = 88.6 bits (218), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 48/71 (67%), Positives = 50/71 (70%), Gaps = 19/71 (26%)

Query: 2   YIRTMLSTQALLSAIGVGEKSATVIGATF-------------------QGSNLDSNAKMW 42
           Y + MLSTQALLSAIGVGEKSATVIGATF                   QGSNLDSNAKMW
Sbjct: 85  YTKMMLSTQALLSAIGVGEKSATVIGATFQWFLRDFTGMLGGILFTFYQGSNLDSNAKMW 144

Query: 43  RLVADLMNDLG 53
           RLVADLMND+G
Sbjct: 145 RLVADLMNDIG 155


>AT1G13770.2 | Symbols: RUS3 | Protein of unknown function, DUF647
          | chr1:4722243-4724345 FORWARD LENGTH=353
          Length = 353

 Score = 85.5 bits (210), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 47/67 (70%), Positives = 48/67 (71%), Gaps = 19/67 (28%)

Query: 6  MLSTQALLSAIGVGEKSATVIGATFQ-------------------GSNLDSNAKMWRLVA 46
          MLSTQALLSAIGVGEKSATVIGATFQ                   GSNLDSNAKMWRLVA
Sbjct: 2  MLSTQALLSAIGVGEKSATVIGATFQWFLRDFTGMLGGILFTFYQGSNLDSNAKMWRLVA 61

Query: 47 DLMNDLG 53
          DLMND+G
Sbjct: 62 DLMNDIG 68