Miyakogusa Predicted Gene

Lj6g3v0753090.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0753090.2 Non Chatacterized Hit- tr|K4CXD0|K4CXD0_SOLLC
Uncharacterized protein OS=Solanum lycopersicum GN=Sol,31.97,1e-18,RNA
RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN,NULL; FAMILY NOT
NAMED,NULL; seg,NULL,CUFF.58330.2
         (406 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55670.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   196   2e-50
AT5G55670.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   131   8e-31

>AT5G55670.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:22544669-22546801 REVERSE LENGTH=710
          Length = 710

 Score =  196 bits (499), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/290 (43%), Positives = 153/290 (52%), Gaps = 6/290 (2%)

Query: 122 PPL-MHHQSMMNQGFDPAFGGPIGRMGNYGGFPGAPTPPFSGIMXXXXXXXXXXXXXXXX 180
           PP+ M HQ MM QGF+ AFGGP+ RMG YGGFPGAP P F G++                
Sbjct: 422 PPMNMMHQPMMGQGFEQAFGGPMARMGGYGGFPGAPGPQFPGLLSSFPPVGGVGLPGVAP 481

Query: 181 XXNPAFFXXXXXXXXXXXXPTSGMDGP-NMGMWSDPNMXX-XXXXXXXXXXXXXSSYGEE 238
             NPAFF            P +G+DG  NMGMW DPN                 SSYGEE
Sbjct: 482 HVNPAFFGRGMPMNGMGMMPNAGVDGGHNMGMW-DPNSGGWGAGEDLGSGRAAESSYGEE 540

Query: 239 AASDHQYGEVNHDRAGWTNTTRDKDRGSERDWSGTSERRYRDDRDQGYERDAPSEKDMGH 298
           AASDHQYGEVNH+R    N  ++K+R SER+WSG+S+RR R+D+D GYERD P EKD+GH
Sbjct: 541 AASDHQYGEVNHERGARPNPVKEKERASEREWSGSSDRRNREDKDAGYERDIPREKDVGH 600

Query: 299 DHEWSGRR-QXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADHHRY 357
            ++   RR +                                               HR 
Sbjct: 601 GYDMPERRHRDDRDTGREREREHHHKDRERSREHVRDRERERERDRHREERERYGGDHRT 660

Query: 358 RDR-EAEPDDELERGRSSRTHSKSRLSHDEEHHSRPRDADYGKRRRLTSE 406
           R R E E D+E  RGRSSR H+KSRLS ++ H S+ RD DYGKRRRLT+E
Sbjct: 661 RHRDEPEHDEEWNRGRSSRGHNKSRLSREDNHRSKSRDTDYGKRRRLTTE 710



 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 32/44 (72%), Gaps = 3/44 (6%)

Query: 1   MNEHEFNGRACVVAYASPFTVKKMGEAQIARNQQGNVNQSAVPQ 44
           +N + FNGR CVV YASP++VK+MGEAQ+ R QQ    QS + Q
Sbjct: 295 LNGYPFNGRPCVVEYASPYSVKRMGEAQVNRTQQA---QSVIAQ 335


>AT5G55670.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:22544669-22546801 REVERSE LENGTH=585
          Length = 585

 Score =  131 bits (330), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 82/177 (46%), Positives = 101/177 (57%), Gaps = 4/177 (2%)

Query: 233 SSYGEEAASDHQYGEVNHDRAGWTNTTRDKDRGSERDWSGTSERRYRDDRDQGYERDAPS 292
           SSYGEEAASDHQYGEVNH+R    N  ++K+R SER+WSG+S+RR R+D+D GYERD P 
Sbjct: 410 SSYGEEAASDHQYGEVNHERGARPNPVKEKERASEREWSGSSDRRNREDKDAGYERDIPR 469

Query: 293 EKDMGHDHEWSGRRQXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 350
           EKD+GH ++   RR                                              
Sbjct: 470 EKDVGHGYDMPERRHRDDRDTGREREREHHHKDRERSREHVRDRERERERDRHREERERY 529

Query: 351 XADHH-RYRDREAEPDDELERGRSSRTHSKSRLSHDEEHHSRPRDADYGKRRRLTSE 406
             DH  R+RD E E D+E  RGRSSR H+KSRLS ++ H S+ RD DYGKRRRLT+E
Sbjct: 530 GGDHRTRHRD-EPEHDEEWNRGRSSRGHNKSRLSREDNHRSKSRDTDYGKRRRLTTE 585



 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 32/44 (72%), Gaps = 3/44 (6%)

Query: 1   MNEHEFNGRACVVAYASPFTVKKMGEAQIARNQQGNVNQSAVPQ 44
           +N + FNGR CVV YASP++VK+MGEAQ+ R QQ    QS + Q
Sbjct: 295 LNGYPFNGRPCVVEYASPYSVKRMGEAQVNRTQQA---QSVIAQ 335