Miyakogusa Predicted Gene
- Lj6g3v0673230.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0673230.1 tr|D7KPD7|D7KPD7_ARALL Predicted protein
OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_679003
PE,30.45,1e-18,helix loop helix domain,Helix-loop-helix domain; EGL3
(ENHANCER OF GLABRA3), DNA BINDING / TRANSCRIP,CUFF.58156.1
(462 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G10610.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 146 3e-35
AT2G16910.1 | Symbols: AMS | basic helix-loop-helix (bHLH) DNA-b... 116 3e-26
AT1G12860.1 | Symbols: SCRM2, ICE2 | basic helix-loop-helix (bHL... 86 5e-17
AT3G26744.4 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-hel... 83 3e-16
AT3G26744.2 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-hel... 83 3e-16
AT3G26744.1 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-hel... 83 3e-16
AT5G57150.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 83 5e-16
AT5G57150.4 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 79 8e-15
AT5G57150.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 79 8e-15
AT5G57150.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 78 1e-14
AT4G17880.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-bind... 78 2e-14
AT4G21330.1 | Symbols: DYT1 | basic helix-loop-helix (bHLH) DNA-... 77 3e-14
AT5G46760.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-bind... 76 4e-14
AT4G29930.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 74 3e-13
AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 |... 72 6e-13
AT4G29930.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 69 7e-12
AT4G16430.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 68 1e-11
AT2G28160.1 | Symbols: FIT1, ATBHLH029, FRU, BHLH029, ATBHLH29, ... 68 2e-11
AT4G29930.4 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 65 8e-11
AT4G29930.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 65 1e-10
AT2G46510.1 | Symbols: ATAIB, AIB | ABA-inducible BHLH-type tran... 60 2e-09
AT1G01260.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 60 3e-09
AT1G01260.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 60 3e-09
AT1G01260.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 60 3e-09
AT4G00870.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 59 8e-09
AT5G10570.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 57 2e-08
AT4G09820.1 | Symbols: TT8, BHLH42 | basic helix-loop-helix (bHL... 57 2e-08
AT2G22750.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 57 3e-08
AT2G22750.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 57 3e-08
AT5G65640.1 | Symbols: bHLH093 | beta HLH protein 93 | chr5:2623... 56 6e-08
AT5G65640.2 | Symbols: bHLH093 | beta HLH protein 93 | chr5:2623... 55 7e-08
AT1G68810.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 54 2e-07
AT4G00050.1 | Symbols: UNE10 | basic helix-loop-helix (bHLH) DNA... 54 3e-07
AT5G43175.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 53 5e-07
AT5G41315.1 | Symbols: GL3, MYC6.2 | basic helix-loop-helix (bHL... 52 8e-07
AT2G20180.3 | Symbols: PIL5 | phytochrome interacting factor 3-l... 52 1e-06
AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor 3-l... 52 1e-06
AT2G20180.1 | Symbols: PIL5, PIF1 | phytochrome interacting fact... 51 1e-06
AT1G63650.3 | Symbols: EGL3 | basic helix-loop-helix (bHLH) DNA-... 51 2e-06
AT1G63650.2 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-he... 51 2e-06
AT1G63650.1 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-he... 51 2e-06
AT2G31210.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 49 5e-06
AT1G09530.2 | Symbols: PIF3, POC1, PAP3 | phytochrome interactin... 49 5e-06
AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | phytochrome interactin... 49 5e-06
AT5G67110.1 | Symbols: ALC | basic helix-loop-helix (bHLH) DNA-b... 49 6e-06
>AT1G10610.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:3506463-3508752 FORWARD
LENGTH=441
Length = 441
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 92/166 (55%), Gaps = 17/166 (10%)
Query: 1 MSGGFEVVEWLRPLVETNDWDYAVAWKFGVDPTRFIEWIGCCCGGS------NKENMEHA 54
M GG V E+LRP V++ WD V WK G DP+RFIEW+GCCC G EN E
Sbjct: 4 MRGGERVKEFLRPFVDSRTWDLCVIWKLGDDPSRFIEWVGCCCSGCYIDKNIKLENSEEG 63
Query: 55 VMPKVEILSEESHLNLICRDTQFPHQVRTKTCEALSKLPLAMSLYSGVHGEVAISQQPKW 114
+ + S CRD H++RT CEALS+ PL M LY G+HGEV +S+ PKW
Sbjct: 64 GTGRKKKAS-------FCRDDHNKHRIRTLACEALSRFPLFMPLYPGIHGEVVMSKSPKW 116
Query: 115 LIQEDSS----GTQVLIPVVGGLIELFTAKLIPKDIDVIEFITENC 156
L+ S T+VL+PV GL+ELF + P D ++ I C
Sbjct: 117 LVNSGSKMEMFSTRVLVPVSDGLVELFAFDMRPFDESMVHLIMSRC 162
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 101/182 (55%), Gaps = 4/182 (2%)
Query: 280 EGYSAKNLVTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQXXXXXX 339
E + +KNL +ER RR++I + +Y LR++VPKITK++ I +DA+DYI EL +
Sbjct: 259 ENFKSKNLHSERKRRERINQAMYGLRAVVPKITKLNKIGIFSDAVDYINELLVEKQKLED 318
Query: 340 XXXXXXXXXXXXYTTQEQGVTSSLSHTNVDQTSSDCTENTKM-EVQAEVHHLGGTDFLIK 398
+EQ S+++ ++ SS + K EV+ EVH G DFLI+
Sbjct: 319 ELKGINEMECKEIAAEEQ---SAIADPEAERVSSKSNKRVKKNEVKIEVHETGERDFLIR 375
Query: 399 LYCDHKQGRFSRLMEAMHSFGLHVVNANMTTLNGKVLNILTVEATEQDIHQTELKEYLIQ 458
+ +HKQ F RL+EA+ L +++ N T L+ V+ +L V+A + I L++ L++
Sbjct: 376 VVQEHKQDGFKRLIEAVDLCELEIIDVNFTRLDLTVMTVLNVKANKDGIACGILRDLLLK 435
Query: 459 QI 460
+
Sbjct: 436 MM 437
>AT2G16910.1 | Symbols: AMS | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr2:7331721-7334077
FORWARD LENGTH=571
Length = 571
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 90/160 (56%), Gaps = 25/160 (15%)
Query: 7 VVEWLRPLVETNDWDYAVAWKFGVDPTRFIEWIGCCCGGSNKENMEHAVMPKVEILSEES 66
++E LRPLV WDY V W+ D RF++W+GCCCGG+ E+++E
Sbjct: 8 LLEKLRPLVGARAWDYCVLWRLNED-QRFVKWMGCCCGGT-------------ELIAENG 53
Query: 67 HLNLI---CRDTQFPHQVRTKTCEALSKLPLAMSLYSGVHGEVAISQQPKWL-------I 116
CRD F H RTK+CE LS LP ++ L SG++ E ++ Q WL
Sbjct: 54 TEEFSYGGCRDVMF-HHPRTKSCEFLSHLPASIPLDSGIYAETLLTNQTGWLSESSEPSF 112
Query: 117 QEDSSGTQVLIPVVGGLIELFTAKLIPKDIDVIEFITENC 156
+++ T+VLIP+ GGL+ELF + + +D +V++F+ +C
Sbjct: 113 MQETICTRVLIPIPGGLVELFATRHVAEDQNVVDFVMGHC 152
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 96/184 (52%), Gaps = 16/184 (8%)
Query: 284 AKNLVTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQXXXXXXXXXX 343
AKNL+ ER RR K+ LY LRSLVP+ITK+D ASIL DAI+Y+KELQ +
Sbjct: 313 AKNLMAERRRRKKLNDRLYALRSLVPRITKLDRASILGDAINYVKELQNEAKELQDELEE 372
Query: 344 XXXXXXXXYTTQE---------QGVTSSLS-HTNVDQTSSDCT-ENT-----KMEVQAEV 387
Q G LS ++NV D EN+ +ME Q +V
Sbjct: 373 NSETEDGSNRPQGGMSLNGTVVTGFHPGLSCNSNVPSVKQDVDLENSNDKGQEMEPQVDV 432
Query: 388 HHLGGTDFLIKLYCDHKQGRFSRLMEAMHSFGLHVVNANMTTLNGKVLNILTVEATEQDI 447
L G +F +K+ C++K G F+RLMEA+ S GL V NAN T V N+ VE + ++
Sbjct: 433 AQLDGREFFVKVICEYKPGGFTRLMEALDSLGLEVTNANTTRYLSLVSNVFKVEKNDNEM 492
Query: 448 HQTE 451
Q E
Sbjct: 493 VQAE 496
>AT1G12860.1 | Symbols: SCRM2, ICE2 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr1:4384758-4386392
FORWARD LENGTH=450
Length = 450
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 82/180 (45%), Gaps = 2/180 (1%)
Query: 284 AKNLVTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQXXXXXXXXXX 343
AKNL+ ER RR K+ LY LRS+VPKI+KMD ASIL DAIDY+KEL ++
Sbjct: 266 AKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHTELES 325
Query: 344 XXXXXXXXYTTQEQGVTSSLSHTNVDQTSSDCTENTKMEVQAEVHHLGGTDFLIKLYCDH 403
+ T S SS + + EV G I ++C
Sbjct: 326 TPPSSSSLHPLTPTPQTLSYRVKEELCPSSSLPSPKGQQPRVEVRLREGKAVNIHMFCGR 385
Query: 404 KQGRFSRLMEAMHSFGLHVVNANMTTLNGKVLNILTVEATEQ--DIHQTELKEYLIQQIG 461
+ G M A+ + GL V A ++ NG L++ E ++ D+ ++K L+ G
Sbjct: 386 RPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQCQEDHDVLPEQIKAVLLDTAG 445
>AT3G26744.4 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr3:9832953-9834790 REVERSE LENGTH=494
Length = 494
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 85/184 (46%), Gaps = 6/184 (3%)
Query: 284 AKNLVTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQXXXXXXXXXX 343
AKNL+ ER RR K+ LY LRS+VPKI+KMD ASIL DAIDY+KEL ++
Sbjct: 306 AKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELES 365
Query: 344 XXXXXXXXYTTQEQGVTSSLSHTNVDQTSSDCTENTK----MEVQAEVHHLGGTDFLIKL 399
++ +T + + C + + + EV G I +
Sbjct: 366 TPPGSLPPTSSSFHPLTPTPQTLSCRVKEELCPSSLPSPKGQQARVEVRLREGRAVNIHM 425
Query: 400 YCDHKQGRFSRLMEAMHSFGLHVVNANMTTLNGKVLNILTVEATE--QDIHQTELKEYLI 457
+C + G M+A+ + GL V A ++ NG L++ E + Q+I ++K L
Sbjct: 426 FCGRRPGLLLATMKALDNLGLDVQQAVISCFNGFALDVFRAEQCQEGQEILPDQIKAVLF 485
Query: 458 QQIG 461
G
Sbjct: 486 DTAG 489
>AT3G26744.2 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr3:9832953-9834790 REVERSE LENGTH=494
Length = 494
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 85/184 (46%), Gaps = 6/184 (3%)
Query: 284 AKNLVTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQXXXXXXXXXX 343
AKNL+ ER RR K+ LY LRS+VPKI+KMD ASIL DAIDY+KEL ++
Sbjct: 306 AKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELES 365
Query: 344 XXXXXXXXYTTQEQGVTSSLSHTNVDQTSSDCTENTK----MEVQAEVHHLGGTDFLIKL 399
++ +T + + C + + + EV G I +
Sbjct: 366 TPPGSLPPTSSSFHPLTPTPQTLSCRVKEELCPSSLPSPKGQQARVEVRLREGRAVNIHM 425
Query: 400 YCDHKQGRFSRLMEAMHSFGLHVVNANMTTLNGKVLNILTVEATE--QDIHQTELKEYLI 457
+C + G M+A+ + GL V A ++ NG L++ E + Q+I ++K L
Sbjct: 426 FCGRRPGLLLATMKALDNLGLDVQQAVISCFNGFALDVFRAEQCQEGQEILPDQIKAVLF 485
Query: 458 QQIG 461
G
Sbjct: 486 DTAG 489
>AT3G26744.1 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr3:9832953-9834790 REVERSE LENGTH=494
Length = 494
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 85/184 (46%), Gaps = 6/184 (3%)
Query: 284 AKNLVTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQXXXXXXXXXX 343
AKNL+ ER RR K+ LY LRS+VPKI+KMD ASIL DAIDY+KEL ++
Sbjct: 306 AKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELES 365
Query: 344 XXXXXXXXYTTQEQGVTSSLSHTNVDQTSSDCTENTK----MEVQAEVHHLGGTDFLIKL 399
++ +T + + C + + + EV G I +
Sbjct: 366 TPPGSLPPTSSSFHPLTPTPQTLSCRVKEELCPSSLPSPKGQQARVEVRLREGRAVNIHM 425
Query: 400 YCDHKQGRFSRLMEAMHSFGLHVVNANMTTLNGKVLNILTVEATE--QDIHQTELKEYLI 457
+C + G M+A+ + GL V A ++ NG L++ E + Q+I ++K L
Sbjct: 426 FCGRRPGLLLATMKALDNLGLDVQQAVISCFNGFALDVFRAEQCQEGQEILPDQIKAVLF 485
Query: 458 QQIG 461
G
Sbjct: 486 DTAG 489
>AT5G57150.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:23152361-23154872 FORWARD
LENGTH=247
Length = 247
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 3/174 (1%)
Query: 283 SAKNLVTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQXXXXXXXXX 342
++KN+V+ERNRR K+ + L+ LRS+VP ITKMD ASI+ DAI YI+ LQ +
Sbjct: 52 ASKNIVSERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGLQYEEKKLEAEIR 111
Query: 343 XXXXXXXXXYTTQ---EQGVTSSLSHTNVDQTSSDCTENTKMEVQAEVHHLGGTDFLIKL 399
+ ++ + ++ + Q S + + ++ +V +G ++ +
Sbjct: 112 ELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKVTFMGERTMVVSV 171
Query: 400 YCDHKQGRFSRLMEAMHSFGLHVVNANMTTLNGKVLNILTVEATEQDIHQTELK 453
C+ + +L E S L ++ +N+T+ +G + + + +EA E++ LK
Sbjct: 172 TCNKRTDTMVKLCEVFESLNLKILTSNLTSFSGMIFHTVFIEADEEEQEVLRLK 225
>AT5G57150.4 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:23152361-23154801 FORWARD
LENGTH=264
Length = 264
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 283 SAKNLVTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQXXXXXXXXX 342
++KN+V+ERNRR K+ + L+ LRS+VP ITKMD ASI+ DAI YI+ LQ +
Sbjct: 53 ASKNIVSERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGLQYEEKKLEAEIR 112
Query: 343 XXXXXXXXXYTTQ---EQGVTSSLSHTNVDQTSSDCTENTKMEVQAEVHHLGGTDFLIKL 399
+ ++ + ++ + Q S + + ++ +V +G ++ +
Sbjct: 113 ELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKVTFMGERTMVVSV 172
Query: 400 YCDHKQGRFSRLMEAMHSFGLHVVNANMTTLNGKVLNILTVE 441
C+ + +L E S L ++ +N+T+ +G + + + +E
Sbjct: 173 TCNKRTDTMVKLCEVFESLNLKILTSNLTSFSGMIFHTVFIE 214
>AT5G57150.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:23152361-23153293 FORWARD
LENGTH=226
Length = 226
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 84/164 (51%), Gaps = 3/164 (1%)
Query: 283 SAKNLVTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQXXXXXXXXX 342
++KN+V+ERNRR K+ + L+ LRS+VP ITKMD ASI+ DAI YI+ LQ +
Sbjct: 53 ASKNIVSERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGLQYEEKKLEAEIR 112
Query: 343 XXXXXXXXXYTTQ---EQGVTSSLSHTNVDQTSSDCTENTKMEVQAEVHHLGGTDFLIKL 399
+ ++ + ++ + Q S + + ++ +V +G ++ +
Sbjct: 113 ELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKVTFMGERTMVVSV 172
Query: 400 YCDHKQGRFSRLMEAMHSFGLHVVNANMTTLNGKVLNILTVEAT 443
C+ + +L E S L ++ +N+T+ +G + + + +E +
Sbjct: 173 TCNKRTDTMVKLCEVFESLNLKILTSNLTSFSGMIFHTVFIEVS 216
>AT5G57150.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:23152361-23154556 FORWARD
LENGTH=219
Length = 219
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 283 SAKNLVTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQXXXXXXXXX 342
++KN+V+ERNRR K+ + L+ LRS+VP ITKMD ASI+ DAI YI+ LQ +
Sbjct: 53 ASKNIVSERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGLQYEEKKLEAEIR 112
Query: 343 XXXXXXXXXYTTQ---EQGVTSSLSHTNVDQTSSDCTENTKMEVQAEVHHLGGTDFLIKL 399
+ ++ + ++ + Q S + + ++ +V +G ++ +
Sbjct: 113 ELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKVTFMGERTMVVSV 172
Query: 400 YCDHKQGRFSRLMEAMHSFGLHVVNANMTTLNGKVLNILTVE 441
C+ + +L E S L ++ +N+T+ +G + + + +E
Sbjct: 173 TCNKRTDTMVKLCEVFESLNLKILTSNLTSFSGMIFHTVFIE 214
>AT4G17880.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-binding
family protein | chr4:9933702-9935471 REVERSE LENGTH=589
Length = 589
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 6/173 (3%)
Query: 289 TERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQXXXXXXXXXXXXXXX 348
ER RR+K+ + Y+LR++VP ++KMD AS+L DAI YI EL+ +
Sbjct: 420 AERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYISELKSKLQKAESDKEELQKQI 479
Query: 349 XXXYTTQEQGVTSSLSHTNVDQTSSDCTENTKMEVQAEVHHLGGTDFLIKLYCDHKQGRF 408
+S ++Q SS E MEV ++ G D +I++ C +
Sbjct: 480 DVMNKEAGNAKSSVKDRKCLNQESSVLIE---MEVDVKII---GWDAMIRIQCSKRNHPG 533
Query: 409 SRLMEAMHSFGLHVVNANMTTLNGKVLNILTVEATEQDIHQTELKEYLIQQIG 461
++ MEA+ L V +A+++ +N ++ TV+ Q Q +LK L +++G
Sbjct: 534 AKFMEALKELDLEVNHASLSVVNDLMIQQATVKMGNQFFTQDQLKVALTEKVG 586
>AT4G21330.1 | Symbols: DYT1 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:11349922-11350694
FORWARD LENGTH=207
Length = 207
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 89/185 (48%), Gaps = 12/185 (6%)
Query: 278 QKEGYSAKNLVTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQXXXX 337
+ E + + NL ER RR+K+ L LRS VP +T M ASI+ DAI YI ELQ
Sbjct: 25 EDENFKSPNLEAERRRREKLHCRLMALRSHVPIVTNMTKASIVEDAITYIGELQNNVKNL 84
Query: 338 XXXXXXXXXXXXXXYTTQEQGVTSSLSHTNVDQTSSDCTENTK---MEVQAEVHHLGGTD 394
Q T + V+ +SD E K +E ++ +G
Sbjct: 85 LETFHEMEEAPPEIDEEQ----TDPMIKPEVE--TSDLNEEMKKLGIEENVQLCKIGERK 138
Query: 395 FLIKLYCDHKQGRFSRLMEAMHSFGLHVVNANMTTLNGKVLNILTVEATEQ-DIHQTELK 453
F +K+ + + G F++ ME M G +++ ++TT NG +L +V+ E D+ QT K
Sbjct: 139 FWLKIITEKRDGIFTKFMEVMRFLGFEIIDISLTTSNGAILISASVQTQELCDVEQT--K 196
Query: 454 EYLIQ 458
++L++
Sbjct: 197 DFLLE 201
>AT5G46760.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-binding
family protein | chr5:18974231-18976009 FORWARD
LENGTH=592
Length = 592
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 4/174 (2%)
Query: 289 TERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQXXXXXXXXXXXXXXX 348
ER RR+K+ + Y+LR++VP ++KMD AS+L DAI YI EL+ +
Sbjct: 419 AERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYINELKSKLQQAESDKEEIQKKL 478
Query: 349 XXXYTTQEQGVTSSLSHTNVDQTSSDCTENT-KMEVQAEVHHLGGTDFLIKLYCDHKQGR 407
G ++ D T ++ +ME+ ++ G D +I++ C K
Sbjct: 479 DGMSKEGNNGKGCGSRAKERKSSNQDSTASSIEMEIDVKII---GWDVMIRVQCGKKDHP 535
Query: 408 FSRLMEAMHSFGLHVVNANMTTLNGKVLNILTVEATEQDIHQTELKEYLIQQIG 461
+R MEA+ L V +A+++ +N ++ TV+ Q + +LK L+ ++G
Sbjct: 536 GARFMEALKELDLEVNHASLSVVNDLMIQQATVKMGSQFFNHDQLKVALMTKVG 589
>AT4G29930.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14644108-14647449 FORWARD
LENGTH=225
Length = 225
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 90/172 (52%), Gaps = 16/172 (9%)
Query: 283 SAKNLVTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQXXXXXXXXX 342
S+KN+V+ERNRR K+ + L+ LRS+VP I+K+D AS++ D+IDY++EL Q
Sbjct: 52 SSKNVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQELIDQEKTLEAE-- 109
Query: 343 XXXXXXXXXYTTQEQGVTSSLSHTNVDQTSSDCTENTKMEV-QAEVHHLGGTDFLIKLYC 401
+E S+L +D ++ ++ +EV + +V +G ++ + C
Sbjct: 110 -----------IRELESRSTLLENPMDYSTR--VQHYPIEVLEMKVTWMGEKTVVVCITC 156
Query: 402 DHKQGRFSRLMEAMHSFGLHVVNANMTTLNGKVLNILTVEATEQDIHQTELK 453
K+ +L + + S L+++ N ++ ++ L ++A E++ E K
Sbjct: 157 SKKRETMVQLCKVLESLNLNILTTNFSSFTSRLSTTLFLQADEEESSAVEAK 208
>AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 |
Basic helix-loop-helix (bHLH) DNA-binding family protein
| chr1:11799042-11800913 REVERSE LENGTH=623
Length = 623
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 87/173 (50%), Gaps = 5/173 (2%)
Query: 289 TERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQXXXXXXXXXXXXXXX 348
ER RR+K+ + Y LR++VP ++KMD AS+L DAI YI EL+ +
Sbjct: 456 AERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAIAYINELKSK-VVKTESEKLQIKNQ 514
Query: 349 XXXYTTQEQGVTSSLSHTNVDQTSSDCTENTKMEVQAEVHHLGGTDFLIKLYCDHKQGRF 408
+ G +S S ++ SS C+ + ++ EV + G D +I++ +
Sbjct: 515 LEEVKLELAGRKASASGGDM---SSSCSSIKPVGMEIEVKII-GWDAMIRVESSKRNHPA 570
Query: 409 SRLMEAMHSFGLHVVNANMTTLNGKVLNILTVEATEQDIHQTELKEYLIQQIG 461
+RLM A+ L V +A+M+ +N ++ TV+ + Q +L+ LI +IG
Sbjct: 571 ARLMSALMDLELEVNHASMSVVNDLMIQQATVKMGFRIYTQEQLRASLISKIG 623
>AT4G29930.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14644108-14647449 FORWARD
LENGTH=254
Length = 254
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 89/190 (46%), Gaps = 23/190 (12%)
Query: 283 SAKNLVTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQXXXXXXXXX 342
S+KN+V+ERNRR K+ + L+ LRS+VP I+K+D AS++ D+IDY++EL Q
Sbjct: 52 SSKNVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQELIDQEKTLEAEIR 111
Query: 343 XXXXXXXXXYTTQEQGVTS---SLSHTNVDQTSSDCTENTK----MEVQAEVHH------ 389
T E V + + T++ S + +K M+ V H
Sbjct: 112 ELESRS----TLLENPVRDYDCNFAETHLQDFSDNNDMRSKKFKQMDYSTRVQHYPIEVL 167
Query: 390 ------LGGTDFLIKLYCDHKQGRFSRLMEAMHSFGLHVVNANMTTLNGKVLNILTVEAT 443
+G ++ + C K+ +L + + S L+++ N ++ ++ L ++A
Sbjct: 168 EMKVTWMGEKTVVVCITCSKKRETMVQLCKVLESLNLNILTTNFSSFTSRLSTTLFLQAD 227
Query: 444 EQDIHQTELK 453
E++ E K
Sbjct: 228 EEESSAVEAK 237
>AT4G16430.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:9267599-9269002 FORWARD
LENGTH=467
Length = 467
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 90/353 (25%), Positives = 140/353 (39%), Gaps = 68/353 (19%)
Query: 11 LRPLVETNDWDYAVAWKFG----VDPTRFIEWIGCC--CGGSNKENMEHAVMPKVEILSE 64
LR +VE +DWDYA+ W D I G C G++ E+ K +L
Sbjct: 54 LRHVVEGSDWDYALFWLASNVNSSDGCVLIWGDGHCRVKKGASGEDYSQQDEIKRRVL-R 112
Query: 65 ESHLNLICRDTQFPHQVRTKTCEALSKLPLAMSLY------SGVHGEVA--ISQQPKWLI 116
+ HL+ + D V++ L LA SLY + +G +S +P W
Sbjct: 113 KLHLSFVGSDEDH-RLVKSGALTDLDMFYLA-SLYFSFRCDTNKYGPAGTYVSGKPLWAA 170
Query: 117 Q--------------EDSSGTQVL--IPVVGGLIELFTAKLIPKDIDVIEFITENCCVSV 160
S+G Q + +PV G++EL + + IP+D VIE + SV
Sbjct: 171 DLPSCLSYYRVRSFLARSAGFQTVLSVPVNSGVVELGSLRHIPEDKSVIEMVK-----SV 225
Query: 161 KKEAISAQSSTTSLNFNEHFTLAAPGVHLPPVNQCSSNPSTEGPSGGSNLSLERHQSFDS 220
+ Q+ F +L G P + +P TE +G SLE ++
Sbjct: 226 FGGSDFVQAKEAPKIFGRQLSL---GGAKPRSMSINFSPKTEDDTG---FSLESYE---- 275
Query: 221 KFVCMIPHKYMNKPVEXXXXXXXXXXXYNETSGKRKRGLSSDRGHSEEDQGKLARETQKE 280
+ + V + RKRG G E
Sbjct: 276 -----VQAIGGSNQVYGYEQGKDETLYLTDEQKPRKRGRKPANGREE------------- 317
Query: 281 GYSAKNLVTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQ 333
+ ++ ER RR+K+ + Y LR++VP I+KMD AS+L DAI YI ++Q++
Sbjct: 318 --ALNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLADAITYITDMQKK 368
>AT2G28160.1 | Symbols: FIT1, ATBHLH029, FRU, BHLH029, ATBHLH29,
ATFIT1 | FER-like regulator of iron uptake |
chr2:12004713-12005908 FORWARD LENGTH=318
Length = 318
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 27/158 (17%)
Query: 284 AKNLVTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQXXXXXXXXXX 343
++ L++ER RR ++K LY LRSLVP ITKMD ASI+ DA+ Y++ELQ Q
Sbjct: 130 SRTLISERRRRGRMKDKLYALRSLVPNITKMDKASIVGDAVLYVQELQSQAKKLKSDIA- 188
Query: 344 XXXXXXXXYTTQEQGVTSSLSHTNVDQTSSDCTENT-----------KMEVQAEVHHLGG 392
G+ +SL+ T Q + + T K +Q +V +
Sbjct: 189 --------------GLEASLNSTGGYQEHAPDAQKTQPFRGINPPASKKIIQMDVIQVEE 234
Query: 393 TDFLIKLYCDHKQGRFSRLMEAMHSF-GLHVVNANMTT 429
F ++L C+ +G L +++ S V N+N+++
Sbjct: 235 KGFYVRLVCNKGEGVAPSLYKSLESLTSFQVQNSNLSS 272
>AT4G29930.4 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14644108-14645168 FORWARD
LENGTH=184
Length = 184
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 41/48 (85%)
Query: 283 SAKNLVTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKEL 330
S+KN+V+ERNRR K+ + L+ LRS+VP I+K+D AS++ D+IDY++EL
Sbjct: 52 SSKNVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQEL 99
>AT4G29930.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14644108-14645505 FORWARD
LENGTH=263
Length = 263
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 42/51 (82%)
Query: 283 SAKNLVTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQ 333
S+KN+V+ERNRR K+ + L+ LRS+VP I+K+D AS++ D+IDY++EL Q
Sbjct: 52 SSKNVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQELIDQ 102
>AT2G46510.1 | Symbols: ATAIB, AIB | ABA-inducible BHLH-type
transcription factor | chr2:19091187-19092887 REVERSE
LENGTH=566
Length = 566
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 34/45 (75%)
Query: 289 TERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQ 333
ER RR+K+ + Y LRS+VP I+KMD AS+L DAI YIKELQ +
Sbjct: 399 AERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYIKELQEK 443
>AT1G01260.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:109595-111367 FORWARD
LENGTH=590
Length = 590
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 30/196 (15%)
Query: 250 ETSGKRKRGLSSDRGHSEEDQGKLARETQKEGYSAKNLVTERNRRDKIKKGLYTLRSLVP 309
E G+ + +D + + + R + ++ ER RR+K+ + Y LRS+VP
Sbjct: 398 EGGGEWADAVGADESGNNRPRKRGRRPANGRAEALNHVEAERQRREKLNQRFYALRSVVP 457
Query: 310 KITKMDIASILTDAIDYIKELQRQXXXXXXXXXXXXXXXXXXYTTQEQGVTSSLSHTNVD 369
I+KMD AS+L DA+ YI EL + L +
Sbjct: 458 NISKMDKASLLGDAVSYINELH-----------------------------AKLKVMEAE 488
Query: 370 QTSSDCTENTKMEVQAEVH-HLGGTDFLIKLYCDHKQGRFSRLMEAMHSFGLHVVNANMT 428
+ + N + + ++++ G D +++ C + SR+ A + V+N+N+
Sbjct: 489 RERLGYSSNPPISLDSDINVQTSGEDVTVRINCPLESHPASRIFHAFEESKVEVINSNLE 548
Query: 429 TLNGKVLNILTVEATE 444
VL+ V++ E
Sbjct: 549 VSQDTVLHTFVVKSEE 564
>AT1G01260.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:109595-111367 FORWARD
LENGTH=590
Length = 590
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 30/196 (15%)
Query: 250 ETSGKRKRGLSSDRGHSEEDQGKLARETQKEGYSAKNLVTERNRRDKIKKGLYTLRSLVP 309
E G+ + +D + + + R + ++ ER RR+K+ + Y LRS+VP
Sbjct: 398 EGGGEWADAVGADESGNNRPRKRGRRPANGRAEALNHVEAERQRREKLNQRFYALRSVVP 457
Query: 310 KITKMDIASILTDAIDYIKELQRQXXXXXXXXXXXXXXXXXXYTTQEQGVTSSLSHTNVD 369
I+KMD AS+L DA+ YI EL + L +
Sbjct: 458 NISKMDKASLLGDAVSYINELH-----------------------------AKLKVMEAE 488
Query: 370 QTSSDCTENTKMEVQAEVH-HLGGTDFLIKLYCDHKQGRFSRLMEAMHSFGLHVVNANMT 428
+ + N + + ++++ G D +++ C + SR+ A + V+N+N+
Sbjct: 489 RERLGYSSNPPISLDSDINVQTSGEDVTVRINCPLESHPASRIFHAFEESKVEVINSNLE 548
Query: 429 TLNGKVLNILTVEATE 444
VL+ V++ E
Sbjct: 549 VSQDTVLHTFVVKSEE 564
>AT1G01260.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:109595-111367 FORWARD
LENGTH=590
Length = 590
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 30/196 (15%)
Query: 250 ETSGKRKRGLSSDRGHSEEDQGKLARETQKEGYSAKNLVTERNRRDKIKKGLYTLRSLVP 309
E G+ + +D + + + R + ++ ER RR+K+ + Y LRS+VP
Sbjct: 398 EGGGEWADAVGADESGNNRPRKRGRRPANGRAEALNHVEAERQRREKLNQRFYALRSVVP 457
Query: 310 KITKMDIASILTDAIDYIKELQRQXXXXXXXXXXXXXXXXXXYTTQEQGVTSSLSHTNVD 369
I+KMD AS+L DA+ YI EL + L +
Sbjct: 458 NISKMDKASLLGDAVSYINELH-----------------------------AKLKVMEAE 488
Query: 370 QTSSDCTENTKMEVQAEVH-HLGGTDFLIKLYCDHKQGRFSRLMEAMHSFGLHVVNANMT 428
+ + N + + ++++ G D +++ C + SR+ A + V+N+N+
Sbjct: 489 RERLGYSSNPPISLDSDINVQTSGEDVTVRINCPLESHPASRIFHAFEESKVEVINSNLE 548
Query: 429 TLNGKVLNILTVEATE 444
VL+ V++ E
Sbjct: 549 VSQDTVLHTFVVKSEE 564
>AT4G00870.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:362230-363639 REVERSE
LENGTH=423
Length = 423
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 14/180 (7%)
Query: 254 KRKRGLSSDRGHSEEDQGKLARETQKEGYSA--KNLVTERNRRDKIKKGLYTLRSLVPKI 311
KR+R L + R +A T+++ + A ++ E+ RR+K+ Y LR++VPK+
Sbjct: 225 KRRRKLETTR---------VAAATKEKHHPAVLSHVEAEKQRREKLNHRFYALRAIVPKV 275
Query: 312 TKMDIASILTDAIDYIKELQRQXXXXXXXXXXXXXXXXXXYTTQEQGVTSSLSHTNVDQT 371
++MD AS+L+DA+ YI+ L+ + + S V+Q
Sbjct: 276 SRMDKASLLSDAVSYIESLKSKIDDLETEIKKMKMTETDKLDNSSSNTSPSSVEYQVNQK 335
Query: 372 SSDCTENTKMEVQAEVHHLGGTDFLIKLYCDHKQGRFSRLMEAMHSFGLHVVNANMTTLN 431
S + +EVQ ++ G + +I++ ++ S LM A+ V +AN + L+
Sbjct: 336 PSKSNRGSDLEVQVKI---VGEEAIIRVQTENVNHPTSALMSALMEMDCRVQHANASRLS 392
>AT5G10570.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:3341357-3342877 FORWARD
LENGTH=315
Length = 315
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 217 SFDSKFVCMIPHKYMNKPVEXXXXXXXXXXXYNETSGKRKRGLSSDRGHSEEDQGKLARE 276
+FD F+ I H + P Y+ + K +S + + KL
Sbjct: 89 AFDYPFLEDIIHSSYSPPPLILPASQENTNNYSPLMEESKSFISIGETNKKRSNKKL--- 145
Query: 277 TQKEGYSAKNLVTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKEL 330
EG +KNL+ ER RR ++ L LRS+VPKITKMD SIL DAIDY+KEL
Sbjct: 146 ---EGQPSKNLMAERRRRKRLNDRLSLLRSIVPKITKMDRTSILGDAIDYMKEL 196
>AT4G09820.1 | Symbols: TT8, BHLH42 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:6182067-6186261
FORWARD LENGTH=518
Length = 518
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 26/135 (19%)
Query: 286 NLVTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQXXXXXXXXXXXX 345
++V ER RR+K+ + TLRS+VP +TKMD SIL D I Y+ L+++
Sbjct: 364 HVVAERRRREKLNEKFITLRSMVPFVTKMDKVSILGDTIAYVNHLRKRVHEL-------- 415
Query: 346 XXXXXXYTTQEQGVTSSLSHTNVDQTSSDCTENTKMEVQAEVHHLGGTDFLIKLYCDHKQ 405
+ H + + C T EV+ + D L+++ C+++
Sbjct: 416 ---------------ENTHHEQQHKRTRTCKRKTSEEVEVSIIE---NDVLLEMRCEYRD 457
Query: 406 GRFSRLMEAMHSFGL 420
G +++ +H G+
Sbjct: 458 GLLLDILQVLHELGI 472
>AT2G22750.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:9672145-9673624 FORWARD
LENGTH=305
Length = 305
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 3/152 (1%)
Query: 277 TQKEGYSAKNLVTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQXXX 336
T+ + + +++ ER RR+K+ + L +L+P + KMD AS+L DAI +IK LQ
Sbjct: 118 TRSQSNAQDHILAERKRREKLTQRFVALSALIPGLKKMDKASVLGDAIKHIKYLQES--V 175
Query: 337 XXXXXXXXXXXXXXXYTTQEQGVTSSLSHTNVDQTSSDCTENTKMEVQAEVH-HLGGTDF 395
++ + +H +SSD N+ E+ + G D
Sbjct: 176 KEYEEQKKEKTMESVVLVKKSSLVLDENHQPSSSSSSDGNRNSSSSNLPEIEVRVSGKDV 235
Query: 396 LIKLYCDHKQGRFSRLMEAMHSFGLHVVNANM 427
LIK+ C+ ++G ++M + GL + N+N+
Sbjct: 236 LIKILCEKQKGNVIKIMGEIEKLGLSITNSNV 267
>AT2G22750.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:9672145-9673624 FORWARD
LENGTH=304
Length = 304
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 3/152 (1%)
Query: 277 TQKEGYSAKNLVTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQXXX 336
T+ + + +++ ER RR+K+ + L +L+P + KMD AS+L DAI +IK LQ
Sbjct: 118 TRSQSNAQDHILAERKRREKLTQRFVALSALIPGLKKMDKASVLGDAIKHIKYLQES--V 175
Query: 337 XXXXXXXXXXXXXXXYTTQEQGVTSSLSHTNVDQTSSDCTENTKMEVQAEVH-HLGGTDF 395
++ + +H +SSD N+ E+ + G D
Sbjct: 176 KEYEEQKKEKTMESVVLVKKSSLVLDENHQPSSSSSSDGNRNSSSSNLPEIEVRVSGKDV 235
Query: 396 LIKLYCDHKQGRFSRLMEAMHSFGLHVVNANM 427
LIK+ C+ ++G ++M + GL + N+N+
Sbjct: 236 LIKILCEKQKGNVIKIMGEIEKLGLSITNSNV 267
>AT5G65640.1 | Symbols: bHLH093 | beta HLH protein 93 |
chr5:26237137-26238904 FORWARD LENGTH=351
Length = 351
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 38/51 (74%)
Query: 280 EGYSAKNLVTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKEL 330
EG +KNL+ ER RR ++ L LRS+VPKI+KMD SIL DAIDY+KEL
Sbjct: 173 EGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDAIDYMKEL 223
>AT5G65640.2 | Symbols: bHLH093 | beta HLH protein 93 |
chr5:26237137-26238635 FORWARD LENGTH=290
Length = 290
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 38/51 (74%)
Query: 280 EGYSAKNLVTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKEL 330
EG +KNL+ ER RR ++ L LRS+VPKI+KMD SIL DAIDY+KEL
Sbjct: 173 EGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDAIDYMKEL 223
>AT1G68810.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:25861289-25862882 FORWARD
LENGTH=368
Length = 368
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 41/181 (22%)
Query: 270 QGKLARETQKEGYSAKNLVTERNRRDK-------IKKGLYTLRSLVPKITKMDIASILTD 322
Q +L + T +E AK L ++ + I L LRS++P TK D AS+L +
Sbjct: 155 QAELGKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSILPNTTKTDKASLLAE 214
Query: 323 AIDYIKELQRQXXXXXXXXXXXXXXXXXXYTTQEQGVTSSLSHTNVDQTSSDCTENTKME 382
I ++KEL+R+ TS +S TN+ T SD ++
Sbjct: 215 VIQHVKELKRE--------------------------TSVISETNLVPTESD-----ELT 243
Query: 383 VQ-AEVHHLGGTDFLIK--LYCDHKQGRFSRLMEAMHSFGLHVVNANMTTLNGKVLNILT 439
V E G F+IK L C+ + +++ + + L + A +TT+ G+V N+L
Sbjct: 244 VAFTEEEETGDGRFVIKASLCCEDRSDLLPDMIKTLKAMRLKTLKAEITTVGGRVKNVLF 303
Query: 440 V 440
V
Sbjct: 304 V 304
>AT4G00050.1 | Symbols: UNE10 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:17863-19848
FORWARD LENGTH=399
Length = 399
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 42/63 (66%)
Query: 271 GKLARETQKEGYSAKNLVTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKEL 330
GK + T++ +A + +ER RRDKI + + TL+ LVP +K D AS+L + I+Y+K+L
Sbjct: 203 GKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQL 262
Query: 331 QRQ 333
Q Q
Sbjct: 263 QAQ 265
>AT5G43175.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:17334261-17335234 FORWARD
LENGTH=223
Length = 223
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 248 YNETSGKRKRGLSSDRGHSEEDQGKLARETQKEGYSAKNLVTERNRRDKIKKGLYTLRSL 307
YN + ++ GL S+ S + + K R + S + R RR++I L TL+SL
Sbjct: 109 YNSSDDEKALGLVSNTSKSLKRKAKANRGIASDPQS----LYARKRRERINDRLKTLQSL 164
Query: 308 VPKITKMDIASILTDAIDYIKELQRQ 333
VP TK+DI+++L DA+ Y+K LQ Q
Sbjct: 165 VPNGTKVDISTMLEDAVHYVKFLQLQ 190
>AT5G41315.1 | Symbols: GL3, MYC6.2 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:16529457-16532866
FORWARD LENGTH=637
Length = 637
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 19/170 (11%)
Query: 288 VTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQXXXXXXXXXXXXXX 347
V E+ RR+K+ + TLR ++P I K+D SIL D I+Y++EL+R+
Sbjct: 444 VLEKKRREKLNERFMTLRKIIPSINKIDKVSILDDTIEYLQELERRVQELESCRESTDTE 503
Query: 348 XXXXYTTQEQGVTSSLSHTNVDQTSSDCTENTKMEV----QAEVHHLG------------ 391
T + + + T+ + +++ K+ V +AE G
Sbjct: 504 TRGTMTMKRKKPCDAGERTSANCANNETGNGKKVSVNNVGEAEPADTGFTGLTDNLRIGS 563
Query: 392 -GTDFLIKLYCDHKQGRFSRLMEAMHSFGLHVVNANMTTLNGKVLNILTV 440
G + +I+L C ++G +M+ + LH+ + ++ + G L LTV
Sbjct: 564 FGNEVVIELRCAWREGVLLEIMDVISD--LHLDSHSVQSSTGDGLLCLTV 611
>AT2G20180.3 | Symbols: PIL5 | phytochrome interacting factor 3-like
5 | chr2:8704276-8706538 REVERSE LENGTH=478
Length = 478
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 254 KRKRGLSSDRGHSEEDQGKLAR----ETQKEGYSAKNLVTERNRRDKIKKGLYTLRSLVP 309
K + ++D S ++ K AR T++ + + ++ER RRD+I + + L+ L+P
Sbjct: 253 KEREATTTDETESRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIP 312
Query: 310 KITKMDIASILTDAIDYIKELQRQ 333
+ K D AS+L +AI+Y+K LQ Q
Sbjct: 313 RCNKSDKASMLDEAIEYMKSLQLQ 336
>AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor 3-like
5 | chr2:8704525-8706538 REVERSE LENGTH=478
Length = 478
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 254 KRKRGLSSDRGHSEEDQGKLAR----ETQKEGYSAKNLVTERNRRDKIKKGLYTLRSLVP 309
K + ++D S ++ K AR T++ + + ++ER RRD+I + + L+ L+P
Sbjct: 253 KEREATTTDETESRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIP 312
Query: 310 KITKMDIASILTDAIDYIKELQRQ 333
+ K D AS+L +AI+Y+K LQ Q
Sbjct: 313 RCNKSDKASMLDEAIEYMKSLQLQ 336
>AT2G20180.1 | Symbols: PIL5, PIF1 | phytochrome interacting factor
3-like 5 | chr2:8704525-8706237 REVERSE LENGTH=407
Length = 407
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 254 KRKRGLSSDRGHSEEDQGKLAR----ETQKEGYSAKNLVTERNRRDKIKKGLYTLRSLVP 309
K + ++D S ++ K AR T++ + + ++ER RRD+I + + L+ L+P
Sbjct: 182 KEREATTTDETESRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIP 241
Query: 310 KITKMDIASILTDAIDYIKELQRQ 333
+ K D AS+L +AI+Y+K LQ Q
Sbjct: 242 RCNKSDKASMLDEAIEYMKSLQLQ 265
>AT1G63650.3 | Symbols: EGL3 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr1:23599809-23602734
FORWARD LENGTH=596
Length = 596
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 36/46 (78%)
Query: 288 VTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQ 333
++E+ RR+K+ + TLRS++P I+K+D SIL D I+Y+++LQ++
Sbjct: 408 LSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKR 453
>AT1G63650.2 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr1:23599809-23602734 FORWARD LENGTH=596
Length = 596
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 36/46 (78%)
Query: 288 VTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQ 333
++E+ RR+K+ + TLRS++P I+K+D SIL D I+Y+++LQ++
Sbjct: 408 LSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKR 453
>AT1G63650.1 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr1:23599809-23602734 FORWARD LENGTH=596
Length = 596
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 36/46 (78%)
Query: 288 VTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQ 333
++E+ RR+K+ + TLRS++P I+K+D SIL D I+Y+++LQ++
Sbjct: 408 LSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKR 453
>AT2G31210.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:13296655-13298139 FORWARD
LENGTH=428
Length = 428
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 249 NETSGKRKRGLSSDRGHSEEDQG--KLARETQKEGYSA---KNLVTERNRRDKIKKGLYT 303
N T+ + + + + +++ D G + ++E +++G K TER RR + +
Sbjct: 173 NTTTQRDESNVGDENNNAQFDSGIIEFSKEIRRKGRGKRKNKPFTTERERRCHLNERYEA 232
Query: 304 LRSLVPKITKMDIASILTDAIDYIKELQRQ 333
L+ L+P +K D ASIL D IDYI EL+R+
Sbjct: 233 LKLLIPSPSKGDRASILQDGIDYINELRRR 262
>AT1G09530.2 | Symbols: PIF3, POC1, PAP3 | phytochrome interacting
factor 3 | chr1:3077216-3079367 FORWARD LENGTH=524
Length = 524
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 288 VTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQ 333
++ER RRD+I + + L+ L+P K+D AS+L +AI+Y+K LQ Q
Sbjct: 350 LSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQ 395
>AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | phytochrome interacting
factor 3 | chr1:3077216-3079367 FORWARD LENGTH=524
Length = 524
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 288 VTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQ 333
++ER RRD+I + + L+ L+P K+D AS+L +AI+Y+K LQ Q
Sbjct: 350 LSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQ 395
>AT5G67110.1 | Symbols: ALC | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:26785332-26786338
REVERSE LENGTH=210
Length = 210
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 11/81 (13%)
Query: 264 GHSEEDQGKLARETQKEGYSAKNLV-----------TERNRRDKIKKGLYTLRSLVPKIT 312
G SE Q K A E ++ G +N + +E+ RR KI + + L+ L+P
Sbjct: 65 GVSETGQDKYAFEHKRSGAKQRNSLKRNIDAQFHNLSEKKRRSKINEKMKALQKLIPNSN 124
Query: 313 KMDIASILTDAIDYIKELQRQ 333
K D AS+L +AI+Y+K+LQ Q
Sbjct: 125 KTDKASMLDEAIEYLKQLQLQ 145