Miyakogusa Predicted Gene

Lj6g3v0670130.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0670130.1 Non Chatacterized Hit- tr|I3SQ56|I3SQ56_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.55,0,seg,NULL;
K homology RNA-binding domain,K Homology domain; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAME,CUFF.58147.1
         (220 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13230.1 | Symbols:  | RNA-binding KH domain-containing prote...   335   1e-92

>AT3G13230.1 | Symbols:  | RNA-binding KH domain-containing protein
           | chr3:4270423-4271070 FORWARD LENGTH=215
          Length = 215

 Score =  335 bits (859), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 152/183 (83%), Positives = 178/183 (97%)

Query: 36  MSDGQVQFRKVSVPPHRYTPLKKAWMDLYTPIYEQMKIDVRMNLKARKVELKTRRDTPDI 95
           MSDG+VQFRK++VPP+RY+PLKKAW+D+YTPIY+QMK+D+RMNLKARKVELKTR DTPDI
Sbjct: 33  MSDGKVQFRKIAVPPNRYSPLKKAWLDIYTPIYDQMKVDIRMNLKARKVELKTRADTPDI 92

Query: 96  SNLQKCADFVHAFMLGFDVIDAIALLRLDELYIESFEIKDVKTLRGDHLSRAIGRLSGKG 155
           SNLQK ADFVHAFMLGFD+ DAI+LLR+DELY+ESFEIKDVKTL+G+HLSRAIGRLSGKG
Sbjct: 93  SNLQKSADFVHAFMLGFDIPDAISLLRMDELYVESFEIKDVKTLKGEHLSRAIGRLSGKG 152

Query: 156 GKTKFAIENASKTRIVIADSKIHILGSFANIKIARDSLCSLIMGSPAGKVYSKLRAVTSR 215
           GKTKFAIEN++KTRIVIAD++IHILG+F+NIK+AR SLCSLIMGSPAGKVYSKLR+V++R
Sbjct: 153 GKTKFAIENSTKTRIVIADTRIHILGAFSNIKVARSSLCSLIMGSPAGKVYSKLRSVSAR 212

Query: 216 LAE 218
           L E
Sbjct: 213 LNE 215