Miyakogusa Predicted Gene

Lj6g3v0670020.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0670020.1 Non Chatacterized Hit- tr|C6TCW0|C6TCW0_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2
S,89.59,0,coiled-coil,NULL; no description,NULL; DNA-DAMAGE INDUCIBLE
PROTEIN DDI1 (V-SNARE-MASTER 1),NULL; AS,CUFF.58157.1
         (400 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13235.2 | Symbols:  | ubiquitin family protein | chr3:427149...   609   e-175
AT3G13235.1 | Symbols:  | ubiquitin family protein | chr3:427149...   609   e-175
AT3G13235.3 | Symbols:  | ubiquitin family protein | chr3:427149...   608   e-174

>AT3G13235.2 | Symbols:  | ubiquitin family protein |
           chr3:4271492-4274348 REVERSE LENGTH=414
          Length = 414

 Score =  609 bits (1571), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 300/404 (74%), Positives = 334/404 (82%), Gaps = 4/404 (0%)

Query: 1   MKITVMTADEQILTLDVDPNESVENVKALLEVETSVPLQKQQLLFNGKEVRNPEKLSALG 60
           M+ITVMTA EQI+TLDVD  E+VENVKALLEVE++VP+Q+QQLL+NG E+ N +KLSALG
Sbjct: 1   MRITVMTAGEQIITLDVDSQETVENVKALLEVESNVPIQQQQLLYNGNEMGNSDKLSALG 60

Query: 61  VKDDDLLMMVXXXXXXXXXXXXXXNDLSFNPDGSAVNPSAFQQHIRRDSNMMGQLFQSDP 120
           VKDDDLLMM+              NDL  NPDGSA+NP+AFQQHIR DSN+MGQLFQ+DP
Sbjct: 61  VKDDDLLMMMVSNASSGSATSAAGNDLGMNPDGSALNPAAFQQHIRGDSNLMGQLFQNDP 120

Query: 121 ELAQAILGNDLNRLQEILRLRHRQKDEYRRQKEEELALLYADPFDVEAQKKIEAAIRQKG 180
           ELAQ I G+DLN+LQ++LR RHRQ+   +RQKEEELALLYADPFDVEAQ+KIEAAIRQKG
Sbjct: 121 ELAQVISGSDLNKLQDVLRARHRQRSVLQRQKEEELALLYADPFDVEAQRKIEAAIRQKG 180

Query: 181 IDENWEAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERLGLLRLL 240
           IDENWEAALEHNPE FARV+MLYVDMEVNGVPLKAFVDSGAQSTIISKSCAER GLLRL+
Sbjct: 181 IDENWEAALEHNPEGFARVIMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLM 240

Query: 241 DQRYKGIAHGVGQSEILGRIHVAPIKIGTIFYPCSFLVLDSPNMEFLFGLDMLRKHQCII 300
           DQRYKGIAHGVGQ+EILGRIHVAPIKIG  FYPCSF+VLDSPNMEFLFGLDMLRKHQC I
Sbjct: 241 DQRYKGIAHGVGQTEILGRIHVAPIKIGNNFYPCSFVVLDSPNMEFLFGLDMLRKHQCTI 300

Query: 301 DLKDNVLRVGGGEVSVPFLQEKDIPSRFFDEEKLSKEASTSGGPVTSG----SNNPSQXX 356
           DLK+NV+ VGGGEVSVPFLQEKDIPSRF DEE++  +AS+SG  V SG     NN     
Sbjct: 301 DLKENVMTVGGGEVSVPFLQEKDIPSRFLDEERVPNDASSSGATVPSGFTEKKNNTVANP 360

Query: 357 XXXXXXXXXXXXXXXFEAKVAKLVELGFGRDEVIQALQLCNGNE 400
                          FEAK+AKLVELGF RD VIQAL+L  GNE
Sbjct: 361 TSQQPKRQNTSEGPEFEAKIAKLVELGFSRDSVIQALKLFEGNE 404


>AT3G13235.1 | Symbols:  | ubiquitin family protein |
           chr3:4271492-4274348 REVERSE LENGTH=414
          Length = 414

 Score =  609 bits (1571), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 300/404 (74%), Positives = 334/404 (82%), Gaps = 4/404 (0%)

Query: 1   MKITVMTADEQILTLDVDPNESVENVKALLEVETSVPLQKQQLLFNGKEVRNPEKLSALG 60
           M+ITVMTA EQI+TLDVD  E+VENVKALLEVE++VP+Q+QQLL+NG E+ N +KLSALG
Sbjct: 1   MRITVMTAGEQIITLDVDSQETVENVKALLEVESNVPIQQQQLLYNGNEMGNSDKLSALG 60

Query: 61  VKDDDLLMMVXXXXXXXXXXXXXXNDLSFNPDGSAVNPSAFQQHIRRDSNMMGQLFQSDP 120
           VKDDDLLMM+              NDL  NPDGSA+NP+AFQQHIR DSN+MGQLFQ+DP
Sbjct: 61  VKDDDLLMMMVSNASSGSATSAAGNDLGMNPDGSALNPAAFQQHIRGDSNLMGQLFQNDP 120

Query: 121 ELAQAILGNDLNRLQEILRLRHRQKDEYRRQKEEELALLYADPFDVEAQKKIEAAIRQKG 180
           ELAQ I G+DLN+LQ++LR RHRQ+   +RQKEEELALLYADPFDVEAQ+KIEAAIRQKG
Sbjct: 121 ELAQVISGSDLNKLQDVLRARHRQRSVLQRQKEEELALLYADPFDVEAQRKIEAAIRQKG 180

Query: 181 IDENWEAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERLGLLRLL 240
           IDENWEAALEHNPE FARV+MLYVDMEVNGVPLKAFVDSGAQSTIISKSCAER GLLRL+
Sbjct: 181 IDENWEAALEHNPEGFARVIMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLM 240

Query: 241 DQRYKGIAHGVGQSEILGRIHVAPIKIGTIFYPCSFLVLDSPNMEFLFGLDMLRKHQCII 300
           DQRYKGIAHGVGQ+EILGRIHVAPIKIG  FYPCSF+VLDSPNMEFLFGLDMLRKHQC I
Sbjct: 241 DQRYKGIAHGVGQTEILGRIHVAPIKIGNNFYPCSFVVLDSPNMEFLFGLDMLRKHQCTI 300

Query: 301 DLKDNVLRVGGGEVSVPFLQEKDIPSRFFDEEKLSKEASTSGGPVTSG----SNNPSQXX 356
           DLK+NV+ VGGGEVSVPFLQEKDIPSRF DEE++  +AS+SG  V SG     NN     
Sbjct: 301 DLKENVMTVGGGEVSVPFLQEKDIPSRFLDEERVPNDASSSGATVPSGFTEKKNNTVANP 360

Query: 357 XXXXXXXXXXXXXXXFEAKVAKLVELGFGRDEVIQALQLCNGNE 400
                          FEAK+AKLVELGF RD VIQAL+L  GNE
Sbjct: 361 TSQQPKRQNTSEGPEFEAKIAKLVELGFSRDSVIQALKLFEGNE 404


>AT3G13235.3 | Symbols:  | ubiquitin family protein |
           chr3:4271492-4274348 REVERSE LENGTH=413
          Length = 413

 Score =  608 bits (1568), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 300/404 (74%), Positives = 334/404 (82%), Gaps = 5/404 (1%)

Query: 1   MKITVMTADEQILTLDVDPNESVENVKALLEVETSVPLQKQQLLFNGKEVRNPEKLSALG 60
           M+ITVMTA EQI+TLDVD  E+VENVKALLEVE++VP+Q+QQLL+NG E+ N +KLSALG
Sbjct: 1   MRITVMTAGEQIITLDVDSQETVENVKALLEVESNVPIQQQQLLYNGNEMGNSDKLSALG 60

Query: 61  VKDDDLLMMVXXXXXXXXXXXXXXNDLSFNPDGSAVNPSAFQQHIRRDSNMMGQLFQSDP 120
           VKDDDLLMM+              NDL  NPDGSA+NP+AFQQHIR DSN+MGQLFQ+DP
Sbjct: 61  VKDDDLLMMMVSNASSGATSAAG-NDLGMNPDGSALNPAAFQQHIRGDSNLMGQLFQNDP 119

Query: 121 ELAQAILGNDLNRLQEILRLRHRQKDEYRRQKEEELALLYADPFDVEAQKKIEAAIRQKG 180
           ELAQ I G+DLN+LQ++LR RHRQ+   +RQKEEELALLYADPFDVEAQ+KIEAAIRQKG
Sbjct: 120 ELAQVISGSDLNKLQDVLRARHRQRSVLQRQKEEELALLYADPFDVEAQRKIEAAIRQKG 179

Query: 181 IDENWEAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERLGLLRLL 240
           IDENWEAALEHNPE FARV+MLYVDMEVNGVPLKAFVDSGAQSTIISKSCAER GLLRL+
Sbjct: 180 IDENWEAALEHNPEGFARVIMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLM 239

Query: 241 DQRYKGIAHGVGQSEILGRIHVAPIKIGTIFYPCSFLVLDSPNMEFLFGLDMLRKHQCII 300
           DQRYKGIAHGVGQ+EILGRIHVAPIKIG  FYPCSF+VLDSPNMEFLFGLDMLRKHQC I
Sbjct: 240 DQRYKGIAHGVGQTEILGRIHVAPIKIGNNFYPCSFVVLDSPNMEFLFGLDMLRKHQCTI 299

Query: 301 DLKDNVLRVGGGEVSVPFLQEKDIPSRFFDEEKLSKEASTSGGPVTSG----SNNPSQXX 356
           DLK+NV+ VGGGEVSVPFLQEKDIPSRF DEE++  +AS+SG  V SG     NN     
Sbjct: 300 DLKENVMTVGGGEVSVPFLQEKDIPSRFLDEERVPNDASSSGATVPSGFTEKKNNTVANP 359

Query: 357 XXXXXXXXXXXXXXXFEAKVAKLVELGFGRDEVIQALQLCNGNE 400
                          FEAK+AKLVELGF RD VIQAL+L  GNE
Sbjct: 360 TSQQPKRQNTSEGPEFEAKIAKLVELGFSRDSVIQALKLFEGNE 403