Miyakogusa Predicted Gene

Lj6g3v0657890.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0657890.2 tr|I1LN46|I1LN46_SOYBN DNA topoisomerase
OS=Glycine max GN=Gma.49661 PE=3 SV=1,90.88,0,PRTPISMRASEI,DNA
topoisomerase, type IA; TOPOISOMERASE_I_PROK,DNA topoisomerase, type
IA, active sit,CUFF.58128.2
         (669 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G32000.1 | Symbols:  | DNA topoisomerase, type IA, core | chr...  1005   0.0  
AT2G32000.2 | Symbols:  | DNA topoisomerase, type IA, core | chr...  1003   0.0  
AT5G63920.1 | Symbols: TOP3A, AtTOP3alpha | topoisomerase 3alpha...   234   1e-61

>AT2G32000.1 | Symbols:  | DNA topoisomerase, type IA, core |
           chr2:13615999-13621563 REVERSE LENGTH=865
          Length = 865

 Score = 1005 bits (2599), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/659 (71%), Positives = 541/659 (82%), Gaps = 4/659 (0%)

Query: 13  SYGPCQTPTLGFCVQRYLQINTFKPEKFWSVNPYIVHSGYEIQLEWQRSKLFDINVATMF 72
           SYGPCQTPTLGFCVQRY+ INTFKPEKFW++ PYI   GYE+QLEW+R +LFD+  AT+F
Sbjct: 209 SYGPCQTPTLGFCVQRYMHINTFKPEKFWALRPYIRKDGYELQLEWERRRLFDLEAATVF 268

Query: 73  QKLVAEDGLLEVTEISEKQETKSRPVGLNTVNLLKVASSALGFGPHMAMQLAERLYTQGF 132
           QKLV E    +V ++SEKQE K RP GLNTVNLLKVASSALGFGP  AM LAERLYTQGF
Sbjct: 269 QKLVVEGRTAKVMDVSEKQEVKGRPAGLNTVNLLKVASSALGFGPQTAMHLAERLYTQGF 328

Query: 133 ISYPRTESTAYPPSFDFRGALSAQANNPTWGNYVEGLLTNGYLKPRLGTDVGDHPPITPM 192
           ISYPRTESTAYP SFDF   L AQ +NP WG YV+ LL++G+  P+ GTD GDHPPITPM
Sbjct: 329 ISYPRTESTAYPSSFDFTDTLRAQVSNPVWGGYVQRLLSDGFHMPKSGTDAGDHPPITPM 388

Query: 193 RPAAEDMLGNDAWKLYQYICQHFIGTVSPDCKYARRKVEFSIGGESFHCTGQHVITKGFT 252
           R A E M+G DAW+LYQY+CQHF+GTVSP+CKY R KVE SIGGE+FHCTGQ V  KGFT
Sbjct: 389 RAATEVMVGGDAWRLYQYVCQHFLGTVSPNCKYIRTKVELSIGGETFHCTGQRVTEKGFT 448

Query: 253 AIMPWLAINDKNIPSFIKGQKIEVSKVELYEGTTTPPDYLTESELISLMEKNGIGTDASI 312
           AIMPW A+++K +PSF+KG++IEV +VELYEG T PPDYLTESELISLMEK+GIGTDASI
Sbjct: 449 AIMPWSAVDEKKLPSFLKGERIEVLRVELYEGNTAPPDYLTESELISLMEKHGIGTDASI 508

Query: 313 PVHINNICERNYVQVQAGRKLVPTTLGITLVRGYQSIDPDLCLPDIRSFIEQQITLIAKG 372
            VHINNI ERNYVQVQ+GRK+VPT LGITL+RGYQ IDPDLCLPDIRSFIEQQITL+AKG
Sbjct: 509 AVHINNIGERNYVQVQSGRKMVPTALGITLIRGYQCIDPDLCLPDIRSFIEQQITLVAKG 568

Query: 373 QIDHHRVVQHVIQQFKQKFCYFVKKIEAMDALFEAQFSTLVDSGRILSKCGKCLRYMKYI 432
           Q DH  VVQHVIQQF++KF YFV++IE MDALFEAQFS L DSGR LSKCGKCLRYMK+I
Sbjct: 569 QADHSHVVQHVIQQFRRKFSYFVQQIEHMDALFEAQFSPLADSGRALSKCGKCLRYMKHI 628

Query: 433 SAQPSRLYCGICEEVYYLPQKGTIKLYKELSCPLDNFELLLCSM-GPDGKSFPLCPYCYS 491
           +A P RL+CG CEEVYYLPQKGT+KLYKEL+CPLDNFEL++ S+ GP+GKSFPLCPYCY+
Sbjct: 629 TAVPPRLFCGTCEEVYYLPQKGTVKLYKELTCPLDNFELVIYSVPGPEGKSFPLCPYCYN 688

Query: 492 NPPFEGIEALINTAKTSTS-GKIGKGAGMPCILCPHPTCPNSLVSQGVCACPECSGTLVL 550
           +PPFEGI+ L   +KT  +  K   GAGMPC LCPHPTC +S+ +QGVCACPEC GTLVL
Sbjct: 689 SPPFEGIDTLFGASKTPNAPAKTKTGAGMPCSLCPHPTCQHSVRNQGVCACPECEGTLVL 748

Query: 551 DPVSAPKWRLCCNMCNCLVFLAQGAHRISTTKERCPECDSSIIEVDFNKKATPLEDGSTL 610
           DPVS PKW+L CN+C+C+V L +GAHRI+TT  RCPECDS+IIE+DFNKK TPLE+G+TL
Sbjct: 749 DPVSFPKWKLNCNLCSCIVLLPEGAHRITTTSNRCPECDSAIIEIDFNKKTTPLENGATL 808

Query: 611 HRGCILCDELLHSLVEMKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVDPKMSFRDF 669
           H+GC+LCDELL SLVE+KH                              VDPKMSFRDF
Sbjct: 809 HQGCVLCDELLLSLVEVKHGRSFVRRGGRGRGRGRGRGRGGRRGSKS--VDPKMSFRDF 865


>AT2G32000.2 | Symbols:  | DNA topoisomerase, type IA, core |
           chr2:13615999-13621397 REVERSE LENGTH=838
          Length = 838

 Score = 1003 bits (2594), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/659 (71%), Positives = 541/659 (82%), Gaps = 4/659 (0%)

Query: 13  SYGPCQTPTLGFCVQRYLQINTFKPEKFWSVNPYIVHSGYEIQLEWQRSKLFDINVATMF 72
           SYGPCQTPTLGFCVQRY+ INTFKPEKFW++ PYI   GYE+QLEW+R +LFD+  AT+F
Sbjct: 182 SYGPCQTPTLGFCVQRYMHINTFKPEKFWALRPYIRKDGYELQLEWERRRLFDLEAATVF 241

Query: 73  QKLVAEDGLLEVTEISEKQETKSRPVGLNTVNLLKVASSALGFGPHMAMQLAERLYTQGF 132
           QKLV E    +V ++SEKQE K RP GLNTVNLLKVASSALGFGP  AM LAERLYTQGF
Sbjct: 242 QKLVVEGRTAKVMDVSEKQEVKGRPAGLNTVNLLKVASSALGFGPQTAMHLAERLYTQGF 301

Query: 133 ISYPRTESTAYPPSFDFRGALSAQANNPTWGNYVEGLLTNGYLKPRLGTDVGDHPPITPM 192
           ISYPRTESTAYP SFDF   L AQ +NP WG YV+ LL++G+  P+ GTD GDHPPITPM
Sbjct: 302 ISYPRTESTAYPSSFDFTDTLRAQVSNPVWGGYVQRLLSDGFHMPKSGTDAGDHPPITPM 361

Query: 193 RPAAEDMLGNDAWKLYQYICQHFIGTVSPDCKYARRKVEFSIGGESFHCTGQHVITKGFT 252
           R A E M+G DAW+LYQY+CQHF+GTVSP+CKY R KVE SIGGE+FHCTGQ V  KGFT
Sbjct: 362 RAATEVMVGGDAWRLYQYVCQHFLGTVSPNCKYIRTKVELSIGGETFHCTGQRVTEKGFT 421

Query: 253 AIMPWLAINDKNIPSFIKGQKIEVSKVELYEGTTTPPDYLTESELISLMEKNGIGTDASI 312
           AIMPW A+++K +PSF+KG++IEV +VELYEG T PPDYLTESELISLMEK+GIGTDASI
Sbjct: 422 AIMPWSAVDEKKLPSFLKGERIEVLRVELYEGNTAPPDYLTESELISLMEKHGIGTDASI 481

Query: 313 PVHINNICERNYVQVQAGRKLVPTTLGITLVRGYQSIDPDLCLPDIRSFIEQQITLIAKG 372
            VHINNI ERNYVQVQ+GRK+VPT LGITL+RGYQ IDPDLCLPDIRSFIEQQITL+AKG
Sbjct: 482 AVHINNIGERNYVQVQSGRKMVPTALGITLIRGYQCIDPDLCLPDIRSFIEQQITLVAKG 541

Query: 373 QIDHHRVVQHVIQQFKQKFCYFVKKIEAMDALFEAQFSTLVDSGRILSKCGKCLRYMKYI 432
           Q DH  VVQHVIQQF++KF YFV++IE MDALFEAQFS L DSGR LSKCGKCLRYMK+I
Sbjct: 542 QADHSHVVQHVIQQFRRKFSYFVQQIEHMDALFEAQFSPLADSGRALSKCGKCLRYMKHI 601

Query: 433 SAQPSRLYCGICEEVYYLPQKGTIKLYKELSCPLDNFELLLCSM-GPDGKSFPLCPYCYS 491
           +A P RL+CG CEEVYYLPQKGT+KLYKEL+CPLDNFEL++ S+ GP+GKSFPLCPYCY+
Sbjct: 602 TAVPPRLFCGTCEEVYYLPQKGTVKLYKELTCPLDNFELVIYSVPGPEGKSFPLCPYCYN 661

Query: 492 NPPFEGIEALINTAKTSTS-GKIGKGAGMPCILCPHPTCPNSLVSQGVCACPECSGTLVL 550
           +PPFEGI+ L   +KT  +  K   GAGMPC LCPHPTC +S+ +QGVCACPEC GTLVL
Sbjct: 662 SPPFEGIDTLFGASKTPNAPAKTKTGAGMPCSLCPHPTCQHSVRNQGVCACPECEGTLVL 721

Query: 551 DPVSAPKWRLCCNMCNCLVFLAQGAHRISTTKERCPECDSSIIEVDFNKKATPLEDGSTL 610
           DPVS PKW+L CN+C+C+V L +GAHRI+TT  RCPECDS+IIE+DFNKK TPLE+G+TL
Sbjct: 722 DPVSFPKWKLNCNLCSCIVLLPEGAHRITTTSNRCPECDSAIIEIDFNKKTTPLENGATL 781

Query: 611 HRGCILCDELLHSLVEMKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVDPKMSFRDF 669
           H+GC+LCDELL SLVE+KH                              VDPKMSFRDF
Sbjct: 782 HQGCVLCDELLLSLVEVKHGRSFVRRGGRGRGRGRGRGRGGRRGSKS--VDPKMSFRDF 838


>AT5G63920.1 | Symbols: TOP3A, AtTOP3alpha | topoisomerase 3alpha |
           chr5:25574533-25581230 FORWARD LENGTH=926
          Length = 926

 Score =  234 bits (598), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 142/429 (33%), Positives = 213/429 (49%), Gaps = 18/429 (4%)

Query: 13  SYGPCQTPTLGFCVQRYLQINTFKPEKFWSVNPYIVHSGYE--IQLEWQRSKLFDINVAT 70
           SYGPCQ PTLGF V+RY +I   +PE+FW++N    H   E      W R  LFD   A 
Sbjct: 219 SYGPCQFPTLGFIVERYWEIQAHEPEEFWTIN--CSHQSEEGLATFNWMRGHLFDYASAV 276

Query: 71  MFQKLVAEDGLLEVTEISEKQET-KSRPVGLNTVNLLKVASSALGFGPHMAMQLAERLYT 129
           +  ++  E+    V  +   +E  K  P  LNT+ L K AS          M++AE LY 
Sbjct: 277 ILYEMCVEEPTATVMNVPHPRERFKYPPYPLNTIELEKRASRYFRLSSEHTMKVAEELYQ 336

Query: 130 QGFISYPRTESTAYPPSFDFRGALSAQANNPTWGNYVEGLLT--NGYLK--PRLGTDVGD 185
            GFISYPRTE+ ++    D R  +  Q  +P WG+Y + LL    G  +     G D   
Sbjct: 337 AGFISYPRTETDSFSSRTDLRAMVEEQTRHPAWGSYAQRLLEPEGGLWRNPANGGHDDKA 396

Query: 186 HPPITPMR-PAAEDMLGNDAWKLYQYICQHFIGTVSPDCKYARRKVEFSIGGESFHCTGQ 244
           HPPI P +  + E     D   +Y+ + +H++  VS     A   VE  I GE F  +G+
Sbjct: 397 HPPIHPTKFSSGESNWSRDHLNVYELVVRHYLACVSQPAVAAETTVEIDIAGERFSASGR 456

Query: 245 HVITKGFTAIMPWLAINDKNIPSFIKGQKIEVSKVELYEGTTTPPDYLTESELISLMEKN 304
            ++ K +  +  + +     IP + KGQ+   + + L    T PP  L E++L+S M+K 
Sbjct: 457 AILAKNYLEVYRFESWGGSVIPVYEKGQQFIPTTLTLDAAVTRPPPLLCEADLLSCMDKA 516

Query: 305 GIGTDASIPVHINNICERNYVQVQAGRKLVPTTLGITLVRGYQSIDPDLCLPDIRSFIEQ 364
           GIGTDA++  HI  + +R Y    A  +  PT LG  LV GY  +  +L  P++R+ +E 
Sbjct: 517 GIGTDATMHDHIKKLLDRGYATKDANTRFSPTNLGEALVMGYDDMGYELWKPNLRALMEH 576

Query: 365 QITLIAKGQIDHHRVVQHVIQQFKQKFC-YFVKK---IEAMDALFEAQFSTLVD----SG 416
            +  ++ G+     V++  +QQ K  F    VKK   +EAM   FE   +T       +G
Sbjct: 577 DMNEVSVGRKTKAEVLETCLQQMKACFLDARVKKSKLLEAMTIFFERSNNTDESESQTAG 636

Query: 417 RILSKCGKC 425
            ++ +C  C
Sbjct: 637 EVVRRCNLC 645