Miyakogusa Predicted Gene

Lj6g3v0647570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0647570.1 Non Chatacterized Hit- tr|D7SL34|D7SL34_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,52.43,0.00000000000003, ,CUFF.58113.1
         (159 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G01870.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    60   7e-10

>AT2G01870.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast
           thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant
           structures; EXPRESSED DURING: 13 growth stages; Has 11
           Blast hits to 11 proteins in 5 species: Archae - 0;
           Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr2:389846-390319 REVERSE LENGTH=157
          Length = 157

 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 56/108 (51%), Gaps = 21/108 (19%)

Query: 57  AKEDSEQYEIDPDKARESLKELDQQIQSLSNE------QVSSPKVRVKVSDVKLAE-DQV 109
           A E  + ++ID DKARE+LK+LDQQI+S ++E      + SS  VR     +   E  ++
Sbjct: 33  ATEREDSFQIDRDKAREALKQLDQQIESQADEKPRIINKTSSDVVRTNNDPIMFEEPPEI 92

Query: 110 SGSGSGSGTDKIDISDXXXXXXXXXXXXXXIFYNVLFYTVIKPSIDGP 157
           SGS   S                       +FYN+LF TVIKPS+DGP
Sbjct: 93  SGSFLTSSA--------------FVLLALTLFYNILFITVIKPSMDGP 126