Miyakogusa Predicted Gene

Lj6g3v0647480.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0647480.1 Non Chatacterized Hit- tr|D8U4J9|D8U4J9_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,28.52,1e-17,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,Translocation protein Sec62; Sec62,Translocation protein
,CUFF.58107.1
         (364 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20920.1 | Symbols:  | translocation protein-related | chr3:7...   496   e-140
AT3G20920.2 | Symbols:  | translocation protein-related | chr3:7...   489   e-138

>AT3G20920.1 | Symbols:  | translocation protein-related |
           chr3:7328763-7330698 REVERSE LENGTH=365
          Length = 365

 Score =  496 bits (1277), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 247/366 (67%), Positives = 285/366 (77%), Gaps = 11/366 (3%)

Query: 1   MKKSSGGAAEKKRVRRSSAP------DLTSDAPPRKQAAKKDVFQVFAEKVRDHKDLVSR 54
           MKK  G  AEKKRV+RSS        D  SD+ PRKQA KKD FQ+FAEKVRDHK L SR
Sbjct: 1   MKKPVG--AEKKRVKRSSGSASTSVRDSGSDSQPRKQAVKKDSFQLFAEKVRDHKGLESR 58

Query: 55  WAVLQETRVEYFRGKDFASFLKNHPEVKDILESDRNLETEDIANILLAKNLLVRCDRVVK 114
           WAV+++ RVEYFRGKDF SF+KN+P+ KDILE D++L+T+DIAN+LL KNLLVRCDRV K
Sbjct: 59  WAVMEQARVEYFRGKDFVSFMKNNPDFKDILEEDKDLDTDDIANVLLGKNLLVRCDRVTK 118

Query: 115 TVRPGKKKLSTWPAHLEIF-PEQIFSENDAFFAWTFAKRHPLWQTLLSFFWPVLTLAICL 173
           T+RPGKKKLSTWPAHLEIF  +Q FSENDAFFAWTF KRHPLWQTLLSFFWPVLTLAICL
Sbjct: 119 TLRPGKKKLSTWPAHLEIFRDDQSFSENDAFFAWTFEKRHPLWQTLLSFFWPVLTLAICL 178

Query: 174 FPVYPHRCKLLILYSCAGXXXXXXXXXXXRGAIFGALYIFLGKRVWFFPNILAEEATLGE 233
           FPVYPHRCKL++LYSCAG           R   FGA++I LGKRVWFFPNILAEEATL E
Sbjct: 179 FPVYPHRCKLIVLYSCAGILLMILSLLFVRAVAFGAMWILLGKRVWFFPNILAEEATLKE 238

Query: 234 LFRFWPKKDEEERPKWTTRIFYAVVAVLFILLLRHHAPDEAARARYQKRVSNIIDDVLEW 293
           LFRFWPKKDEEE PKWT+R+FY VVA++ ++LLR HAPDEAARARYQ+R+SNIIDDVLEW
Sbjct: 239 LFRFWPKKDEEEPPKWTSRLFYTVVAIVVVMLLRRHAPDEAARARYQRRMSNIIDDVLEW 298

Query: 294 SPSLALSGMMDKQQNVSNATGSSDAASQASQTGPEDAAPADGSETFTEQYDTEEVMDNIE 353
           SP LALSG+M+ QQ V N T +++ +S  S  GP+     D  ET  E  D  +  +  E
Sbjct: 299 SPKLALSGLMENQQPV-NITDAANNSSD-SAGGPDQTEEVDLDETQGEDLDETQGKEEAE 356

Query: 354 DAGEED 359
              + D
Sbjct: 357 GWTDSD 362


>AT3G20920.2 | Symbols:  | translocation protein-related |
           chr3:7328763-7330698 REVERSE LENGTH=364
          Length = 364

 Score =  489 bits (1259), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 246/366 (67%), Positives = 284/366 (77%), Gaps = 12/366 (3%)

Query: 1   MKKSSGGAAEKKRVRRSSAP------DLTSDAPPRKQAAKKDVFQVFAEKVRDHKDLVSR 54
           MKK  G  AEKKRV+RSS        D  SD+ PR QA KKD FQ+FAEKVRDHK L SR
Sbjct: 1   MKKPVG--AEKKRVKRSSGSASTSVRDSGSDSQPR-QAVKKDSFQLFAEKVRDHKGLESR 57

Query: 55  WAVLQETRVEYFRGKDFASFLKNHPEVKDILESDRNLETEDIANILLAKNLLVRCDRVVK 114
           WAV+++ RVEYFRGKDF SF+KN+P+ KDILE D++L+T+DIAN+LL KNLLVRCDRV K
Sbjct: 58  WAVMEQARVEYFRGKDFVSFMKNNPDFKDILEEDKDLDTDDIANVLLGKNLLVRCDRVTK 117

Query: 115 TVRPGKKKLSTWPAHLEIF-PEQIFSENDAFFAWTFAKRHPLWQTLLSFFWPVLTLAICL 173
           T+RPGKKKLSTWPAHLEIF  +Q FSENDAFFAWTF KRHPLWQTLLSFFWPVLTLAICL
Sbjct: 118 TLRPGKKKLSTWPAHLEIFRDDQSFSENDAFFAWTFEKRHPLWQTLLSFFWPVLTLAICL 177

Query: 174 FPVYPHRCKLLILYSCAGXXXXXXXXXXXRGAIFGALYIFLGKRVWFFPNILAEEATLGE 233
           FPVYPHRCKL++LYSCAG           R   FGA++I LGKRVWFFPNILAEEATL E
Sbjct: 178 FPVYPHRCKLIVLYSCAGILLMILSLLFVRAVAFGAMWILLGKRVWFFPNILAEEATLKE 237

Query: 234 LFRFWPKKDEEERPKWTTRIFYAVVAVLFILLLRHHAPDEAARARYQKRVSNIIDDVLEW 293
           LFRFWPKKDEEE PKWT+R+FY VVA++ ++LLR HAPDEAARARYQ+R+SNIIDDVLEW
Sbjct: 238 LFRFWPKKDEEEPPKWTSRLFYTVVAIVVVMLLRRHAPDEAARARYQRRMSNIIDDVLEW 297

Query: 294 SPSLALSGMMDKQQNVSNATGSSDAASQASQTGPEDAAPADGSETFTEQYDTEEVMDNIE 353
           SP LALSG+M+ QQ V N T +++ +S  S  GP+     D  ET  E  D  +  +  E
Sbjct: 298 SPKLALSGLMENQQPV-NITDAANNSSD-SAGGPDQTEEVDLDETQGEDLDETQGKEEAE 355

Query: 354 DAGEED 359
              + D
Sbjct: 356 GWTDSD 361