Miyakogusa Predicted Gene

Lj6g3v0647440.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0647440.1 Non Chatacterized Hit- tr|I1MH32|I1MH32_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,55.1,1e-18,DUF565,Uncharacterised protein family
Ycf20,CUFF.58103.1
         (151 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G43050.1 | Symbols: NPQ6 | Protein of unknown function (DUF56...   206   5e-54

>AT5G43050.1 | Symbols: NPQ6 | Protein of unknown function (DUF565)
           | chr5:17268404-17268880 FORWARD LENGTH=158
          Length = 158

 Score =  206 bits (524), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 110/158 (69%), Positives = 121/158 (76%), Gaps = 7/158 (4%)

Query: 1   MAQSLSLISGGLGFRPIPITKVS-----VSGRFTPRSSAVLRIQAVQENGGP--RRLVDI 53
           MA SLS IS  L    +   +       VS  F  +      I+A+QE  GP  RRL+DI
Sbjct: 1   MAHSLSFISTNLNSLVLNHHQCQSFGTFVSSPFKRKRRFARSIRALQETEGPTPRRLIDI 60

Query: 54  VRLIPELSKNYFKSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEY 113
           +R +PE+S+NYFK PSRR LFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEY
Sbjct: 61  IRSVPEISRNYFKKPSRRTLFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEY 120

Query: 114 VTKFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 151
           VT+FYYSR  VTFPIALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 VTRFYYSRTTVTFPIALLNNFKMGFTYGLFIDAFKLAS 158