Miyakogusa Predicted Gene

Lj6g3v0635330.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0635330.1 tr|F2EK69|F2EK69_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2
SV=1,73.58,0.000000000000001,RcbX,Chaperonin-like RbcX,CUFF.58443.1
         (206 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G19855.1 | Symbols:  | Chaperonin-like RbcX protein | chr5:67...   236   1e-62

>AT5G19855.1 | Symbols:  | Chaperonin-like RbcX protein |
           chr5:6712166-6713445 REVERSE LENGTH=203
          Length = 203

 Score =  236 bits (601), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 119/208 (57%), Positives = 148/208 (71%), Gaps = 20/208 (9%)

Query: 1   MVGALSVVGSSVMDSHTGPCLCVDALPTTNVNLKSGGDVALCKSLMGKKHFLRSGGNGKT 60
           MV A  VVGS VMDS + PCLC+DA  T  +  K          ++GK          + 
Sbjct: 1   MVSAWFVVGSPVMDSSSSPCLCLDAHTTGTIRRKK---------ILGK---------ARN 42

Query: 61  MELSSSFTGPGWEWRLSVSRNCK-KQRRDRKMGIVNE-LGGQYEEGFDDVKTQMLNYFTV 118
           +EL SSFTG    +RLS  R  +   R+ +K+ IVNE + G Y++ F DV+ Q++NYFT 
Sbjct: 43  LELGSSFTGSRIVFRLSPKRVSRIANRKSKKLLIVNEDVAGNYDDTFGDVQKQIVNYFTY 102

Query: 119 KAVRTVLQQLYEMNPPKYTWFYNFVVSNKPTDGKRFLRSLGKEQRELAERVMVTRLHLYS 178
           KAVRTVL QLYEMNPP+YTWFYN +++N+PTDGKRFLR+LGKE +ELAERVM+TRLHLY 
Sbjct: 103 KAVRTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQELAERVMITRLHLYG 162

Query: 179 KWVKKCDHAQIYKEISDENLELMRERLM 206
           KW+KKCDH +IY+EISDENL LMRERLM
Sbjct: 163 KWIKKCDHGKIYQEISDENLALMRERLM 190