Miyakogusa Predicted Gene

Lj6g3v0635240.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0635240.1 tr|I3SD25|I3SD25_LOTJA Proliferating cell nuclear
antigen OS=Lotus japonicus PE=2 SV=1,99.5,0,pcna: proliferating cell
nuclear antigen (pcna),Proliferating cell nuclear antigen, PCNA; no
descrip,NODE_1379_length_757_cov_141.096436.path2.1
         (199 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G29570.1 | Symbols: PCNA2, ATPCNA2 | proliferating cell nucle...   362   e-101
AT1G07370.1 | Symbols: PCNA1, ATPCNA1 | proliferating cellular n...   357   4e-99

>AT2G29570.1 | Symbols: PCNA2, ATPCNA2 | proliferating cell nuclear
           antigen 2 | chr2:12650139-12651598 REVERSE LENGTH=264
          Length = 264

 Score =  362 bits (930), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/198 (88%), Positives = 186/198 (93%), Gaps = 1/198 (0%)

Query: 1   MGMNLSNMSKMLKCAGNDDIITIKADDGSDTVTFMFESPTQDKISDFEMKLMDIDSEHLG 60
           MGMNL NMSKMLKCAGNDDIITIKADDGSDTVTFMFESPTQDKI+DFEMKLMDIDSEHLG
Sbjct: 68  MGMNLGNMSKMLKCAGNDDIITIKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLG 127

Query: 61  IPEAEYHAIVRMPSAEFARICKDLSSIGDTVVISVTKEGVKFSTKGDIGTANIVCRQNTS 120
           IP+AEYH+IVRMPS EF+RICKDLSSIGDTVVISVTKEGVKFST GDIGTANIV RQNT+
Sbjct: 128 IPDAEYHSIVRMPSGEFSRICKDLSSIGDTVVISVTKEGVKFSTAGDIGTANIVLRQNTT 187

Query: 121 VDKPEEATVIEMNEPVSLTFALRYMNSFTKATPLSSTVTISLSSELPVVVEYKIAEMGYV 180
           VDKPE+A VIEMNEPVSL+FALRYMNSFTKATPLS TVTISLSSELPVVVEYK+AEMGY+
Sbjct: 188 VDKPEDAIVIEMNEPVSLSFALRYMNSFTKATPLSETVTISLSSELPVVVEYKVAEMGYI 247

Query: 181 RFYLAPKIXXXXXXTKPQ 198
           R+YLAPKI      TKP+
Sbjct: 248 RYYLAPKI-EEEEDTKPE 264


>AT1G07370.1 | Symbols: PCNA1, ATPCNA1 | proliferating cellular
           nuclear antigen 1 | chr1:2263204-2264382 FORWARD
           LENGTH=263
          Length = 263

 Score =  357 bits (915), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 170/188 (90%), Positives = 180/188 (95%)

Query: 1   MGMNLSNMSKMLKCAGNDDIITIKADDGSDTVTFMFESPTQDKISDFEMKLMDIDSEHLG 60
           MGMNL NMSKMLKCAGNDDIITIKADDG DTVTFMFESPTQDKI+DFEMKLMDIDSEHLG
Sbjct: 68  MGMNLGNMSKMLKCAGNDDIITIKADDGGDTVTFMFESPTQDKIADFEMKLMDIDSEHLG 127

Query: 61  IPEAEYHAIVRMPSAEFARICKDLSSIGDTVVISVTKEGVKFSTKGDIGTANIVCRQNTS 120
           IP+AEYH+IVRMPS EF+RICKDLSSIGDTVVISVTKEGVKFST GDIGTANIV RQNT+
Sbjct: 128 IPDAEYHSIVRMPSNEFSRICKDLSSIGDTVVISVTKEGVKFSTAGDIGTANIVLRQNTT 187

Query: 121 VDKPEEATVIEMNEPVSLTFALRYMNSFTKATPLSSTVTISLSSELPVVVEYKIAEMGYV 180
           VDKPE+A VIEM EPVSL+FALRYMNSFTKATPLS TVTISLSSELPVVVEYK+AEMGY+
Sbjct: 188 VDKPEDAIVIEMKEPVSLSFALRYMNSFTKATPLSDTVTISLSSELPVVVEYKVAEMGYI 247

Query: 181 RFYLAPKI 188
           R+YLAPKI
Sbjct: 248 RYYLAPKI 255