Miyakogusa Predicted Gene

Lj6g3v0635190.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0635190.3 Non Chatacterized Hit- tr|G7LHI5|G7LHI5_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,33.73,1e-17,Transposase_24,Transposase, Ptta/En/Spm,
plant,CUFF.58093.3
         (176 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G40087.1 | Symbols:  | Plant transposase (Ptta/En/Spm family)...   100   9e-22
AT3G30200.1 | Symbols:  | Plant transposase (Ptta/En/Spm family)...    93   1e-19

>AT1G40087.1 | Symbols:  | Plant transposase (Ptta/En/Spm family) |
           chr1:14999762-15001868 REVERSE LENGTH=390
          Length = 390

 Score = 99.8 bits (247), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 86/168 (51%), Gaps = 6/168 (3%)

Query: 1   MGKKWSAHKQRLWSEFNIPTKTIDEIIRNVPNGIDKDQWVRFVQYRMKPSTQERCRKNKE 60
           +G K    K R W E+      ++E ++N P  + +DQW   V        ++   +N +
Sbjct: 140 LGSKCKDVKLRFWREYK--RNNLNETLQNRPEKVPEDQWSHLVHLIFTDKWRKMQERNTK 197

Query: 61  NRSKQVIPHTGGSKANSRRRHEIFLETGKLPSRAQMYILTHTKKDGSFVNDAAKGVVEKL 120
           N+   ++PH  G K+ SR+R EI ++TGK P RA+ +I +  K DGSFV+D AK   E L
Sbjct: 198 NQKNHIMPHLCGRKSFSRKRDEIKIKTGKTPCRAEFFIESRKKHDGSFVSDEAKLRAEAL 257

Query: 121 EVGLT---QSTVDETQISPSDTLGITLGEEHSGRVRCMGMGATPSNTI 165
              L    Q T + T  S  D      G E  GRVRC+G G TPS  +
Sbjct: 258 TTLLNLNPQVTYNGTA-SLDDEYSQVFGPERPGRVRCVGRGPTPSRLV 304


>AT3G30200.1 | Symbols:  | Plant transposase (Ptta/En/Spm family) |
           chr3:11827752-11834262 REVERSE LENGTH=510
          Length = 510

 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 4/167 (2%)

Query: 1   MGKKWSAHKQRLWSEFNIPTKTIDEIIRNVPNGIDKDQWVRFVQYRMKPSTQERCRKNKE 60
           +G +    K R W E       ++E + N P  + +DQW   V  R     ++   +N +
Sbjct: 260 LGSRCKDVKLRFWREHK--RNNLNETLENRPEKVPEDQWSHLVHLRFTDKWRKMQERNTK 317

Query: 61  NRSKQVIPHTGGSKANSRRRHEIFLETGKLPSRAQMYILTHTKKDGSFVNDAAK--GVVE 118
           N+   ++PH  G K+ SR+R EI ++TGK P R + +I +  K DGSFV+D AK   +  
Sbjct: 318 NQKNHIMPHLCGRKSFSRKRDEIKIKTGKTPCRVEFFIESRKKHDGSFVSDEAKLRAIAL 377

Query: 119 KLEVGLTQSTVDETQISPSDTLGITLGEEHSGRVRCMGMGATPSNTI 165
              + L          S  D      G E  GRV C+G G TPS  +
Sbjct: 378 TTLLNLNPQVTYNGTASLDDEYSQVFGPERPGRVHCVGRGPTPSRLV 424