Miyakogusa Predicted Gene

Lj6g3v0609650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0609650.1 tr|B9HP64|B9HP64_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_650159 PE=4
SV=1,67.95,2e-19,TSP9,Thylakoid soluble phosphoprotein TSP9; seg,NULL;
TSP9-like,NULL,gene.g64534.t1.1
         (91 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G47070.1 | Symbols:  | LOCATED IN: thylakoid, chloroplast thy...    51   2e-07

>AT3G47070.1 | Symbols:  | LOCATED IN: thylakoid, chloroplast
          thylakoid membrane, chloroplast, chloroplast envelope;
          EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
          growth stages; CONTAINS InterPro DOMAIN/s: Thylakoid
          soluble phosphoprotein TSP9 (InterPro:IPR021584); Has
          37 Blast hits to 37 proteins in 10 species: Archae - 0;
          Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37;
          Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
          | chr3:17337205-17337507 REVERSE LENGTH=100
          Length = 100

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 36/60 (60%)

Query: 1  MASLMMSFXXXXXXXXXXXXXXXXXXXKEEKSILDWILGGMQKEDQLLETDPILKKVEEK 60
          ++SL+MSF                   KEEK+ +D++LG M K+DQ  ET+P+LKKV+EK
Sbjct: 2  VSSLLMSFAPATVRVYATSTKGGSGGPKEEKNPIDFVLGFMTKQDQFYETNPLLKKVDEK 61