Miyakogusa Predicted Gene
- Lj6g3v0597010.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0597010.1 tr|B9HCJ6|B9HCJ6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_867813 PE=4
SV=1,36.5,1e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
DUF740,Uncharacterised protein family UPF0503; seg,,gene.g64502.t1.1
(287 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G46990.1 | Symbols: | Protein of unknown function (DUF740) |... 117 1e-26
AT5G58930.1 | Symbols: | Protein of unknown function (DUF740) |... 116 2e-26
AT5G01170.1 | Symbols: | Protein of unknown function (DUF740) |... 64 1e-10
AT3G09070.1 | Symbols: | Protein of unknown function (DUF740) |... 54 1e-07
>AT3G46990.1 | Symbols: | Protein of unknown function (DUF740) |
chr3:17311901-17313544 FORWARD LENGTH=547
Length = 547
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/279 (35%), Positives = 144/279 (51%), Gaps = 37/279 (13%)
Query: 35 PGGSAETMHYYSDRRRRSFDTSNSRRKMVTGDNVDDLRVVSNAKVSPATTELFYGAKVLI 94
PGG+ +T +YYSD RRR + K VD+LR +SNAKVSP T LF+GAK+L+
Sbjct: 269 PGGTVQTKNYYSDSRRRRSFDRSVSIKRQGLLEVDELRGISNAKVSPETVGLFHGAKLLV 328
Query: 95 TENDLRDANLKSRNSVQSDCVIASASKDACDVGIGVGQKG----LKK-FQKWGRLWTKLG 149
TE +LRD+N S +V+ + + C G G+K LKK +KW + W G
Sbjct: 329 TEKELRDSNWYSIKNVKPESKELVSKGKICIAAGGEGKKQDSVELKKPRKKWPKGWNIWG 388
Query: 150 LVHRRKEGK--LGKEEC--GTGDIDNKPIAEPWQKLRRAVNGQASESVSEKLIRSYSVSC 205
L+ R+ E K + E+ G+ +AE KLRR G+ + VSEKL++SYSVS
Sbjct: 389 LIQRKNEAKNEIKTEQILKLEGNAVEGSLAESLLKLRRVGKGETNVGVSEKLLKSYSVSA 448
Query: 206 RNQC----SSGGLVNGL--GVPETKG--------------------NVLNGRQ-ELMLPK 238
R C S +V+G G G N + G+Q +L +
Sbjct: 449 RKSCDGVRSGANIVSGFEGGRSSCDGLFHGSINSVEAGRNSCDGLVNGIEGKQNHHLLQR 508
Query: 239 NRSVRH-SSNNVDAGLLRFYLTPLKSYRRSRSGMSSLKD 276
N +V S N++ + RFYL+P+KS++ S+SG S LK+
Sbjct: 509 NANVGTCSQENLEKSMFRFYLSPVKSHKTSKSGKSRLKN 547
>AT5G58930.1 | Symbols: | Protein of unknown function (DUF740) |
chr5:23794529-23796094 REVERSE LENGTH=521
Length = 521
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/281 (35%), Positives = 140/281 (49%), Gaps = 47/281 (16%)
Query: 35 PGGSAETMHYYSDRRRRSFDTSNSRRKMVTGDNVDDLRVVSNAKVSPATTELFYGAKVLI 94
PGG+A+T YY D RRR +SR ++ VD+L+ +SNAKVSP T LF+GAK+L+
Sbjct: 245 PGGTAQTRDYYLDSRRRRSFDRSSRHGLL---EVDELKAISNAKVSPETVGLFHGAKLLV 301
Query: 95 TENDLRDANLKSRNSVQSDCVIASASKDACDVGIGVGQK----GLKKFQK-WGRLWTKLG 149
TE +LRD+N S + + + + + C V G +K GLKK K W + W G
Sbjct: 302 TERELRDSNWYSIKNYKPESLELGSKGVGC-VAAGEVKKQDGFGLKKSGKNWSKGWNFWG 360
Query: 150 LVHRRKEGKLGKEECGT-------GDIDNKPIAEPWQKLRRAVNGQASESVSEKLIRSYS 202
L+ R+ + + K E T G+ +AE KLRR G+ + VSEKLIRSYS
Sbjct: 361 LIQRKTD--VAKNEMKTEQSLKLGGNTMEGSLAESLLKLRRVAKGETNGDVSEKLIRSYS 418
Query: 203 VSCRNQCS----SGGLVNGL----------------GVPETK---------GNVLNGRQE 233
VS R C +VNG GV + V R
Sbjct: 419 VSARKSCDGMLRGASIVNGFEGGRSSCDGLFHGSITGVETGRRSLCEDGMFHGVEGKRNH 478
Query: 234 LMLPKNRSVRHSSNNVDAGLLRFYLTPLKSYRRSRSGMSSL 274
L+ ++ +S +N+ G++RFYLTPL S+ S+SG S L
Sbjct: 479 LLQSDDKLGTYSPDNLRNGMVRFYLTPLNSHMTSKSGKSRL 519
>AT5G01170.1 | Symbols: | Protein of unknown function (DUF740) |
chr5:58315-60021 FORWARD LENGTH=568
Length = 568
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 106/239 (44%), Gaps = 82/239 (34%)
Query: 34 CPGGSAETMHYY----SDRRRRSFDTSNSRRKMVTGDNVDDLRVVSNAKVSPATTELFYG 89
PGGS +T YY S RRR+S D SNS RK+VT ++D++ VSN+ +
Sbjct: 359 IPGGSNQTRDYYTGPPSSRRRKSLDRSNSIRKIVT--ELEDVKSVSNSTTT--------- 407
Query: 90 AKVLITENDLRDANLKSRNSVQSDCVIASASKDACDVGIGVGQKGLKKFQKWGRLWTKLG 149
I N + A K Q G KK ++WG+ W+ LG
Sbjct: 408 ----IDSNSMETAENKG------------------------NQNGDKKSRRWGK-WSILG 438
Query: 150 LVHRRKEGKLGKEE-----CGTGDIDNKPIAEPWQKLRRAVNGQASESVSEKLIRSYS-V 203
++R+ GK +EE + + + ++E W ++R G K+ RS S V
Sbjct: 439 FIYRK--GKDDEEEDRYSRSNSAGMVERSLSESWPEMRNGEGG------GPKMRRSNSNV 490
Query: 204 SCRNQCSSGGLVNGLGVPETKGNVLNGRQELMLPKNRSVRHSSNNVDAGLLRFYLTPLK 262
S R SSGG G+ +N+S R+SS + + G+LRFYLTP++
Sbjct: 491 SWR---SSGG-----------GSA----------RNKSSRYSSKDGENGMLRFYLTPMR 525
>AT3G09070.1 | Symbols: | Protein of unknown function (DUF740) |
chr3:2768880-2770937 REVERSE LENGTH=685
Length = 685
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 113/256 (44%), Gaps = 65/256 (25%)
Query: 34 CPGGSAETMHYYSD---RRRRSFDTSNSRRKMVTGDNVDDLRVVSNAKVSPATTELFYGA 90
PGGS +T YY+D RRR+S D S+S + V D+ + S + + + G+
Sbjct: 441 IPGGSIQTRDYYTDSSSRRRKSLDRSSSSMRKTAAAVVADMDEPKLSVSSAISIDAYSGS 500
Query: 91 KVLITENDLRDANLKSRNSVQSDCVIASASKDAC-DVGIGVGQKGL------KKFQKWGR 143
LRD N + + +A + + + +G + + KK ++WG+
Sbjct: 501 --------LRDNN---------NYAVETADNGSFREPAMMIGDRKVNSNDNNKKSRRWGK 543
Query: 144 LWTKLGLVHRRKEGKLGKEECGTGD--------IDNKPIAEPWQKLRRAVNGQASESVSE 195
W+ LGL++R+ K +EE D + + ++E W +LR
Sbjct: 544 -WSILGLIYRKSVNKYEEEEEEEEDRYRRLNGGMVERSLSESWPELR----NGGGGGGGP 598
Query: 196 KLIRSYS-VSCRNQCSSGG----LVNGLGVPETKGNVLNGRQELMLPKNRSVRHSSNNVD 250
+++RS S VS R SSGG VNGL +N+S R+S N +
Sbjct: 599 RMVRSNSNVSWR---SSGGGSARKVNGLDR-----------------RNKSSRYSPKNGE 638
Query: 251 AGLLRFYLTPLKSYRR 266
G+L+FYL +K+ RR
Sbjct: 639 NGMLKFYLPHMKASRR 654