Miyakogusa Predicted Gene

Lj6g3v0574840.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0574840.1 Non Chatacterized Hit- tr|K4BY95|K4BY95_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,48.84,0.000000000000002,SUBFAMILY NOT NAMED,NULL; COILIN
P80,Coilin; seg,NULL,CUFF.58298.1
         (403 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G13030.1 | Symbols:  | sphere organelles protein-related | ch...   254   1e-67

>AT1G13030.1 | Symbols:  | sphere organelles protein-related |
           chr1:4444284-4447278 REVERSE LENGTH=608
          Length = 608

 Score =  254 bits (648), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 153/324 (47%), Positives = 202/324 (62%), Gaps = 23/324 (7%)

Query: 93  PVLEKDEQLPIKDNNCKVSDVNQQXXXXXXXXDDVIPVEIRPGHIRFQPLRKDQEVPQNQ 152
           PV+  D Q   K+ +C+  +  Q         D+V+PVE+RPGHIRF+PL    E   + 
Sbjct: 295 PVITIDHQ-ATKEKHCETLENQQAEEVSDGFGDEVVPVEVRPGHIRFKPLAGTDEASLDS 353

Query: 153 FP-VETFCWNGITSKKKGQKWGKERIS---SWKQDDHENSSQEWRAAQKAEREHLSN-PV 207
            P VE   WNG  +KKKGQKWG E+      + QD +E+++      Q AE E L+N P+
Sbjct: 354 EPLVENVLWNGNMTKKKGQKWGTEKSGFSKRYAQDFNEDAT-----TQPAEAETLANCPI 408

Query: 208 DFEKLTPYTSLPKEGDVIAYRLIELSSSWTPELSSFRVGKISQYDAKSNRICLEPVSEFP 267
           D+E+L  YT   K+GDVIAYRLIEL+SSWTPE+SSFRVGKIS YD  S  + L PV EFP
Sbjct: 409 DYEQLVAYTGSVKKGDVIAYRLIELTSSWTPEVSSFRVGKISYYDPDSKMVTLMPVQEFP 468

Query: 268 FVLEEKTDQETS-SGQPDPPLYQEDGSLEVEYTSLADVRMVKHXXXXXXXXXXXXXXLVN 326
             +E+KT+++     QPD  LY+EDGSLE+E+++L DVR VK               L  
Sbjct: 469 --IEKKTEEDDDFCMQPDTSLYKEDGSLEIEFSALLDVRSVK--TSSSDSAEVAKSALPE 524

Query: 327 P------PKATNGSTDEKPAKENGGVSVWDEINEALNAKKAKLSQ-ENGWTKEETTGTRS 379
           P      PK +     + PAKENG VS W+E++EAL+AKKA LSQ  NGW K+ ++   S
Sbjct: 525 PDQSAKKPKLSANKELQTPAKENGEVSPWEELSEALSAKKAALSQANNGWNKKGSSSGGS 584

Query: 380 WSYRAMRGSALGPTMARLRSQNQL 403
           WSY+A+RGSA+GP M  LRSQ ++
Sbjct: 585 WSYKALRGSAMGPVMNYLRSQKEI 608