Miyakogusa Predicted Gene

Lj6g3v0561720.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0561720.2 tr|A9UWY4|A9UWY4_MONBE Predicted protein
OS=Monosiga brevicollis GN=18680 PE=4 SV=1,26.56,1e-18,seg,NULL;
LMBR1,LMBR1-like membrane protein; UNCHARACTERIZED,NULL,CUFF.58028.2
         (266 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G65290.1 | Symbols:  | LMBR1-like membrane protein | chr5:260...   392   e-109
AT5G65290.2 | Symbols:  | LMBR1-like membrane protein | chr5:260...   389   e-109

>AT5G65290.1 | Symbols:  | LMBR1-like membrane protein |
           chr5:26089814-26094337 FORWARD LENGTH=733
          Length = 733

 Score =  392 bits (1006), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/239 (78%), Positives = 206/239 (86%), Gaps = 3/239 (1%)

Query: 1   MWVFYLISLPLTMGMVVLTLRYFAGPDVPLYVLFTVGYTWFSSLSIIILVPADIWATISS 60
           MWVFYLISLPLT+G+VV TLRYFAGP++P YVL TVGYTWF S+S+IIL PADIW T+S 
Sbjct: 1   MWVFYLISLPLTLGLVVFTLRYFAGPEIPRYVLITVGYTWFCSVSVIILAPADIWTTLSL 60

Query: 61  QL---ENGGISFLWSWSYWSTFLLTWAVVPLIQGFEDAGDFTVSERLKTSVHVNLVFYXX 117
           Q    ENG ISFLWSWSYWSTFLLTWAVVPLIQGFEDAGDFTVSERLKTSVHVNLVFY  
Sbjct: 61  QPDHPENGAISFLWSWSYWSTFLLTWAVVPLIQGFEDAGDFTVSERLKTSVHVNLVFYLV 120

Query: 118 XXXXXXXXXXXXXMMHKSWSGSILGLAMACSNTFGLVTGAFLLGFGLSEIPKGVWRNSDW 177
                        MMH++W+GSILG AMACSNTFGLVTGAFLLGFGLSEIPK +W+N+DW
Sbjct: 121 LGFIGLLGLILLIMMHRNWTGSILGYAMACSNTFGLVTGAFLLGFGLSEIPKTLWKNADW 180

Query: 178 TTRQKVLSHKIAKMAVKLDDAHHELSNAIVVAQATSRQMSKRDPLRPYMDVVDKMLTQM 236
           TTRQKVLSHKIAK+AVKLD+AH ELSNAIVVAQATS QMSKRDP+RPYM+V+D ML +M
Sbjct: 181 TTRQKVLSHKIAKIAVKLDNAHQELSNAIVVAQATSTQMSKRDPMRPYMNVIDAMLAKM 239


>AT5G65290.2 | Symbols:  | LMBR1-like membrane protein |
           chr5:26089814-26093617 FORWARD LENGTH=548
          Length = 548

 Score =  389 bits (1000), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/239 (78%), Positives = 206/239 (86%), Gaps = 3/239 (1%)

Query: 1   MWVFYLISLPLTMGMVVLTLRYFAGPDVPLYVLFTVGYTWFSSLSIIILVPADIWATISS 60
           MWVFYLISLPLT+G+VV TLRYFAGP++P YVL TVGYTWF S+S+IIL PADIW T+S 
Sbjct: 1   MWVFYLISLPLTLGLVVFTLRYFAGPEIPRYVLITVGYTWFCSVSVIILAPADIWTTLSL 60

Query: 61  QL---ENGGISFLWSWSYWSTFLLTWAVVPLIQGFEDAGDFTVSERLKTSVHVNLVFYXX 117
           Q    ENG ISFLWSWSYWSTFLLTWAVVPLIQGFEDAGDFTVSERLKTSVHVNLVFY  
Sbjct: 61  QPDHPENGAISFLWSWSYWSTFLLTWAVVPLIQGFEDAGDFTVSERLKTSVHVNLVFYLV 120

Query: 118 XXXXXXXXXXXXXMMHKSWSGSILGLAMACSNTFGLVTGAFLLGFGLSEIPKGVWRNSDW 177
                        MMH++W+GSILG AMACSNTFGLVTGAFLLGFGLSEIPK +W+N+DW
Sbjct: 121 LGFIGLLGLILLIMMHRNWTGSILGYAMACSNTFGLVTGAFLLGFGLSEIPKTLWKNADW 180

Query: 178 TTRQKVLSHKIAKMAVKLDDAHHELSNAIVVAQATSRQMSKRDPLRPYMDVVDKMLTQM 236
           TTRQKVLSHKIAK+AVKLD+AH ELSNAIVVAQATS QMSKRDP+RPYM+V+D ML +M
Sbjct: 181 TTRQKVLSHKIAKIAVKLDNAHQELSNAIVVAQATSTQMSKRDPMRPYMNVIDAMLAKM 239