Miyakogusa Predicted Gene

Lj6g3v0551680.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0551680.1 Non Chatacterized Hit- tr|C0PMW8|C0PMW8_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,36.87,2e-18,coiled-coil,NULL; seg,NULL,CUFF.58024.1
         (342 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G40020.1 | Symbols:  | Myosin heavy chain-related protein | c...    99   4e-21

>AT4G40020.1 | Symbols:  | Myosin heavy chain-related protein |
           chr4:18553453-18555300 REVERSE LENGTH=615
          Length = 615

 Score = 99.4 bits (246), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 98/200 (49%), Gaps = 18/200 (9%)

Query: 1   MDDLALALKEVATEANQVKAKLTLSQVELEHTKGDVERWRAMXXXXXXXXXXXXDVTRKE 60
           MDDLALALKEVAT+ +Q K KL + + ELE  + + ++W+              +  RK+
Sbjct: 179 MDDLALALKEVATDCSQTKEKLVIVETELEAARIESQQWK-----------DKYEEVRKD 227

Query: 61  ADRFKNTXXXXXXXXXXXXXXWNGKETEFVNCIRRAEEERLLAQKESNRIVDLLXXXXXX 120
           A+  KNT              WNGKE+ FV CI+R E+E+     E+NR+++ L      
Sbjct: 228 AELLKNTSERLRIEAEESLLAWNGKESVFVTCIKRGEDEKNSLLDENNRLLEALVAAENL 287

Query: 121 XXXXXXXXXXLRDILKQXXXXXXXXXXXXXXXXXXXXRLQDS-------LTLLVQENEML 173
                     +RDILKQ                     L+D+       L   ++E E +
Sbjct: 288 SKKAKEENHKVRDILKQAINEANVAKEAAGIARAENSNLKDALLDKEEELQFALKEIERV 347

Query: 174 KIHEAASFENIKELKRMLSE 193
           K++EA + +NIK+LK+MLSE
Sbjct: 348 KVNEAVANDNIKKLKKMLSE 367