Miyakogusa Predicted Gene
- Lj6g3v0550640.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0550640.2 tr|G7J386|G7J386_MEDTR tRNA
(Cytosine-5-)-methyltransferase NSUN2 OS=Medicago truncatula
GN=MTR_3g08,76.53,0,RCMTFAMILY,RNA (C5-cytosine) methyltransferase;
RCMTNCL1,tRNA (C5-cytosine) methyltransferase, NCL1;,CUFF.58020.2
(439 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G22400.1 | Symbols: | S-adenosyl-L-methionine-dependent meth... 556 e-158
AT4G40000.1 | Symbols: | S-adenosyl-L-methionine-dependent meth... 526 e-149
AT5G55920.1 | Symbols: OLI2 | S-adenosyl-L-methionine-dependent ... 85 1e-16
AT4G26600.1 | Symbols: | S-adenosyl-L-methionine-dependent meth... 82 1e-15
AT3G13180.1 | Symbols: | NOL1/NOP2/sun family protein / antiter... 68 1e-11
AT1G06560.1 | Symbols: | NOL1/NOP2/sun family protein | chr1:20... 55 7e-08
AT5G26180.2 | Symbols: | S-adenosyl-L-methionine-dependent meth... 53 4e-07
AT5G26180.1 | Symbols: | S-adenosyl-L-methionine-dependent meth... 53 4e-07
AT5G66180.3 | Symbols: | S-adenosyl-L-methionine-dependent meth... 52 1e-06
AT5G66180.1 | Symbols: | S-adenosyl-L-methionine-dependent meth... 52 1e-06
>AT2G22400.1 | Symbols: | S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein |
chr2:9504823-9508788 REVERSE LENGTH=808
Length = 808
Score = 556 bits (1433), Expect = e-158, Method: Compositional matrix adjust.
Identities = 268/435 (61%), Positives = 332/435 (76%), Gaps = 17/435 (3%)
Query: 7 KDPTCSTLAIQNPAFDHYYKEQNIVSPEEWDSFMQVLTTPLPAAFRINSCSRSSADVRSQ 66
+ PT + NP F+ YYK+Q IV EEWD FM++L PLPAAFR+NS + ++ S
Sbjct: 43 QKPTWEPIVTVNPNFEEYYKKQGIVKAEEWDLFMEILRKPLPAAFRVNSNGQFCDEIISI 102
Query: 67 LENDFVQSLQAKVVEEDSHTEALKPLPWYPDNLAWHSNFSRMQLRKNRTLRRFHEFLKLE 126
LENDF++SLQA+ +E EA+KPLPWYP NLAWHSNFSR ++RKN+TL RFHEFLKLE
Sbjct: 103 LENDFMKSLQAEAIE-GGELEAIKPLPWYPKNLAWHSNFSRKEIRKNQTLERFHEFLKLE 161
Query: 127 NELGNITRQEAVSMVPPMFLDVHSNHFVLDMCAAPGSKTFQLLEILHQSSKAGSLPDGMV 186
NE+GNITRQEAVSMVPP+FLDVH +HFVLDMCAAPGSKTFQLLEI+H++S+ GSLP+G+V
Sbjct: 162 NEVGNITRQEAVSMVPPLFLDVHPDHFVLDMCAAPGSKTFQLLEIIHEASEPGSLPNGLV 221
Query: 187 IANDLDVQRCNLLIYQTKRMCTANLIVTNHEAQHFPGCHLNMHDGT---MEADEHITQLL 243
+AND+D +R NLLI+QTKRMCT+NLIVTNHE Q FPGC LN + + + I QL
Sbjct: 222 VANDVDFKRSNLLIHQTKRMCTSNLIVTNHEGQQFPGCRLNKSRASEKGISENMPINQLA 281
Query: 244 FDRILCDVPCSGDGTFRKAPKLLNKWNTGTGNGLHNLQIIIAMRGVSLLKVGGRMVYSTC 303
FDR+LCDVPCSGDGT RKAP + KWN+G GNGLH+LQII+AMRG+SLLKVGG+M+YSTC
Sbjct: 282 FDRVLCDVPCSGDGTLRKAPDIWRKWNSGMGNGLHSLQIILAMRGLSLLKVGGKMIYSTC 341
Query: 304 SMNPIENEAVVAEVLRRCRGSLELVDVSSELPQLVRRPGLKRWKVFDKGMSYVSCKDVPK 363
SMNP+E+EAVVAE+LRRC S+EL+DVS +LP+L+RRPGLK WKV DKG + S KDVP+
Sbjct: 342 SMNPVEDEAVVAEILRRCGDSVELLDVSDKLPELIRRPGLKAWKVRDKGGWFTSYKDVPQ 401
Query: 364 FRRSIVLPSMFPNGGSYQDVVKSNSNCNISIGDEIADDVNGNSDDGVQEAENPVM----- 418
RR VL SMFP+G +D ++ DVNG +DG++E + V+
Sbjct: 402 NRRGGVLVSMFPSGKYLKDSTETTEKNE-------NGDVNG-CEDGLKETDISVVDATPE 453
Query: 419 HDITEVSALPLDRCV 433
EVS LPL+RC+
Sbjct: 454 EQAEEVSDLPLERCM 468
>AT4G40000.1 | Symbols: | S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein |
chr4:18543989-18547443 REVERSE LENGTH=783
Length = 783
Score = 526 bits (1354), Expect = e-149, Method: Compositional matrix adjust.
Identities = 250/378 (66%), Positives = 303/378 (80%), Gaps = 8/378 (2%)
Query: 7 KDPTCSTLAIQNPAFDHYYKEQNIVSPEEWDSFMQVLTTPLPAAFRINSCSRSSADVRSQ 66
+ P CS L F+ YYKEQ IV +EWDSFM+ L PLPAAFR+ S + ++R +
Sbjct: 41 QKPICSNLH-----FEEYYKEQRIVKAQEWDSFMEFLRKPLPAAFRVYSNGQFCDEIRLK 95
Query: 67 LENDFVQSLQAKVVEEDSHTEALKPLPWYPDNLAWHSNFSRMQLRKNRTLRRFHEFLKLE 126
LENDF+ SLQA+ +E EA+KPLPWYP NLAWHSNFSR ++RKN+TL RFHEFLKLE
Sbjct: 96 LENDFMISLQAEAIE-SGELEAIKPLPWYPKNLAWHSNFSRKEIRKNQTLERFHEFLKLE 154
Query: 127 NELGNITRQEAVSMVPPMFLDVHSNHFVLDMCAAPGSKTFQLLEILHQSSKAGSLPDGMV 186
E GN+TRQE+VSMVPP+FLDVH +HFVLDMCAAPGSKTFQLLEI+H+SS+ GSLP+GMV
Sbjct: 155 TEAGNMTRQESVSMVPPLFLDVHPDHFVLDMCAAPGSKTFQLLEIIHESSEPGSLPNGMV 214
Query: 187 IANDLDVQRCNLLIYQTKRMCTANLIVTNHEAQHFPGCHLNMHDGTM-EADEH-ITQLLF 244
+AND+D +R NLLI+QTKR CT NL+VTN+E QHFP C+ E + H I QLLF
Sbjct: 215 VANDVDYKRSNLLIHQTKRTCTTNLMVTNNEGQHFPSCNTKRTLSVASETNPHPIDQLLF 274
Query: 245 DRILCDVPCSGDGTFRKAPKLLNKWNTGTGNGLHNLQIIIAMRGVSLLKVGGRMVYSTCS 304
DR+LCDVPCSGDGT RKAP + +WN+G+GNGLH+LQ+++AMRG+SLLKVGGRMVYSTCS
Sbjct: 275 DRVLCDVPCSGDGTLRKAPDIWRRWNSGSGNGLHSLQVVLAMRGLSLLKVGGRMVYSTCS 334
Query: 305 MNPIENEAVVAEVLRRCRGSLELVDVSSELPQLVRRPGLKRWKVFDKGMSYVSCKDVPKF 364
MNPIE+EAVVAE+LRRC S+ELVDVS +LP+L+RRPGL +WKV D+G Y S KDVPK
Sbjct: 335 MNPIEDEAVVAEILRRCGCSVELVDVSDKLPELIRRPGLTKWKVHDRGGWYRSYKDVPKS 394
Query: 365 RRSIVLPSMFPNGGSYQD 382
+R VL SMFP+G S +D
Sbjct: 395 QRDGVLRSMFPSGKSDKD 412
>AT5G55920.1 | Symbols: OLI2 | S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein |
chr5:22645742-22649383 REVERSE LENGTH=682
Length = 682
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 84/190 (44%), Gaps = 26/190 (13%)
Query: 135 QEAVSMVPPMFLDVHSNHFVLDMCAAPGSKTFQLLEILHQSSKAGSLPDGMVIANDLDVQ 194
Q A S +P M L N ++D+ AAPG KT + ++ + G++ AN++ V
Sbjct: 344 QGASSFLPVMALAPRENERIVDVAAAPGGKTTYIAALMKNT--------GLIYANEMKVP 395
Query: 195 RCNLLIYQTKRMCTANLIVTNHEAQHFPGCHLNMHDGTMEADEHITQLLFDRILCDVPCS 254
R L RM N IV N++ + P + Q DR+L D PCS
Sbjct: 396 RLKSLTANLHRMGVTNTIVCNYDGRELPKV--------------LGQNTVDRVLLDAPCS 441
Query: 255 GDGTFRKAPKLLNKWNTGTGNGLHNLQIIIAMRGVSLL----KVGGRMVYSTCSMNPIEN 310
G G K + +LQ + + + ++ K GG +VYSTCS+ EN
Sbjct: 442 GTGIISKDESVKITKTMDEIKKFAHLQKQLLLAAIDMVDANSKTGGYIVYSTCSIMVTEN 501
Query: 311 EAVVAEVLRR 320
EAV+ L++
Sbjct: 502 EAVIDYALKK 511
>AT4G26600.1 | Symbols: | S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein |
chr4:13419629-13423418 FORWARD LENGTH=671
Length = 671
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 82/189 (43%), Gaps = 26/189 (13%)
Query: 135 QEAVSMVPPMFLDVHSNHFVLDMCAAPGSKTFQLLEILHQSSKAGSLPDGMVIANDLDVQ 194
Q A S +P M L V+DM AAPG KT + ++ + G++ AN++ V
Sbjct: 327 QSASSFLPVMALAPREKERVVDMAAAPGGKTTYVAALMKNT--------GIIYANEMKVP 378
Query: 195 RCNLLIYQTKRMCTANLIVTNHEAQHFPGCHLNMHDGTMEADEHITQLLFDRILCDVPCS 254
R L RM N IV N++ + + Q DR+L D PCS
Sbjct: 379 RLKSLSANLHRMGVTNTIVCNYDGRELTKV--------------LGQSSVDRVLLDAPCS 424
Query: 255 GDGTFRKAPKLLNKWNTGTGNGLHNLQIIIAMRGVSLL----KVGGRMVYSTCSMNPIEN 310
G G K + + +LQ + + + L+ K GG +VYSTCS+ EN
Sbjct: 425 GTGVISKDESVKTSKSADDIKKFAHLQKQLILGAIDLVDANSKTGGYIVYSTCSVMIPEN 484
Query: 311 EAVVAEVLR 319
EAV+ L+
Sbjct: 485 EAVIDYALK 493
>AT3G13180.1 | Symbols: | NOL1/NOP2/sun family protein /
antitermination NusB domain-containing protein |
chr3:4236326-4239966 REVERSE LENGTH=523
Length = 523
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 77/185 (41%), Gaps = 31/185 (16%)
Query: 138 VSMVPPMFLDVHSNHFVLDMCAAPGSKTFQLLEILHQSSKAGSLPDGMVIANDLDVQRCN 197
VS+V P ++D CAAPG KT + L GM+ A D++ R
Sbjct: 323 VSVVKP-----QPGERIMDACAAPGGKTLFMASCLKGQ--------GMIYAMDVNEGRLR 369
Query: 198 LLIYQTKRMCTANLIVTNHEAQHFPGCHLNMHDGTMEADEHITQLLFDRILCDVPCSGDG 257
+L K LI T H + ++ +D++L D PCSG G
Sbjct: 370 ILGETAKSHQVDGLITTIHS--------------DLRVFAETNEVQYDKVLLDAPCSGLG 415
Query: 258 TFRKAPKLLNKWNTGTGNGLH--NLQIIIAMRGVSLLKVGGRMVYSTCSMNPIENEAVVA 315
K L +WN + L LQ + L+K GG +VYSTCS++P ENE V
Sbjct: 416 VLSKRADL--RWNRKLEDMLELTKLQDELLDSASKLVKHGGVLVYSTCSIDPEENEGRVE 473
Query: 316 EVLRR 320
L R
Sbjct: 474 AFLLR 478
>AT1G06560.1 | Symbols: | NOL1/NOP2/sun family protein |
chr1:2007660-2011824 FORWARD LENGTH=599
Length = 599
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 244 FDRILCDVPCSGDGTFRKAPKLLNKWNTGTGNGLHN-LQIIIAMRGVSLLKVGGRMVYST 302
FDR+L D PCS G P+L T H Q + + V L++VGG +VYST
Sbjct: 459 FDRVLLDAPCSALGL---RPRLFAGLETVVSLRNHGWYQRKMLDQAVQLVRVGGILVYST 515
Query: 303 CSMNPIENEAVVAEVLRRCR 322
C++NP ENEAVV L + R
Sbjct: 516 CTINPSENEAVVRYALDKYR 535
>AT5G26180.2 | Symbols: | S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein |
chr5:9149253-9152595 FORWARD LENGTH=567
Length = 567
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 82/198 (41%), Gaps = 31/198 (15%)
Query: 130 GNITRQEAVSMVPPMFLDVHSNHFVLDMCAAPGSKTFQLLEILHQSSKAGSLPDGMVIAN 189
G I Q S + L + VLD C+APG+KT L ++ G +IA
Sbjct: 284 GRIFLQGKASSMVAAALQPQAGWEVLDACSAPGNKTIHLAALMEG--------QGKIIAC 335
Query: 190 DLDVQRCNLLIYQTKRMCTANLIVTNHEAQHFPGCHLNMHDGTMEADEHITQLLFDRILC 249
+L+ +R L + K +N+ V CH + G D ++ IL
Sbjct: 336 ELNEERVKRLEHTIKLSGASNIEV----------CHGDFL-GLNPKDPSFAKI--RAILL 382
Query: 250 DVPCSGDGTFRKAPKLLNKWNTGTGN------GLHNLQII---IAMRGVSLLKVGGRMVY 300
D CSG GT L ++ N LH L + +S KV R+VY
Sbjct: 383 DPSCSGSGTITDRLDHLLPSHSEDNNMNYDSMRLHKLAVFQKKALAHALSFPKVE-RVVY 441
Query: 301 STCSMNPIENEAVVAEVL 318
STCS+ IENE VV+ VL
Sbjct: 442 STCSIYQIENEDVVSSVL 459
>AT5G26180.1 | Symbols: | S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein |
chr5:9149253-9152595 FORWARD LENGTH=567
Length = 567
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 82/198 (41%), Gaps = 31/198 (15%)
Query: 130 GNITRQEAVSMVPPMFLDVHSNHFVLDMCAAPGSKTFQLLEILHQSSKAGSLPDGMVIAN 189
G I Q S + L + VLD C+APG+KT L ++ G +IA
Sbjct: 284 GRIFLQGKASSMVAAALQPQAGWEVLDACSAPGNKTIHLAALMEG--------QGKIIAC 335
Query: 190 DLDVQRCNLLIYQTKRMCTANLIVTNHEAQHFPGCHLNMHDGTMEADEHITQLLFDRILC 249
+L+ +R L + K +N+ V CH + G D ++ IL
Sbjct: 336 ELNEERVKRLEHTIKLSGASNIEV----------CHGDFL-GLNPKDPSFAKI--RAILL 382
Query: 250 DVPCSGDGTFRKAPKLLNKWNTGTGN------GLHNLQII---IAMRGVSLLKVGGRMVY 300
D CSG GT L ++ N LH L + +S KV R+VY
Sbjct: 383 DPSCSGSGTITDRLDHLLPSHSEDNNMNYDSMRLHKLAVFQKKALAHALSFPKVE-RVVY 441
Query: 301 STCSMNPIENEAVVAEVL 318
STCS+ IENE VV+ VL
Sbjct: 442 STCSIYQIENEDVVSSVL 459
>AT5G66180.3 | Symbols: | S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein |
chr5:26449010-26450919 FORWARD LENGTH=374
Length = 374
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 15/135 (11%)
Query: 244 FDRILCDVPCSGDGTFRKAPKLLN-KWNT---------GTGNGLHNLQIIIAMRGVSLLK 293
+D++L D C+ DG+ + K W T T L LQ+ + G LLK
Sbjct: 232 YDKVLVDAECTHDGSIKHIQKFEQWGWKTLERRVLDAERTDTNLKALQLNLLRNGFRLLK 291
Query: 294 VGGRMVYSTCSMNPIENEAVVAEVL-RRCRGSLELVDVSSELP-QLVRRPGLKRWKVFDK 351
G +VYSTCS+ +NE VV + L L+ ++++ + P + R P R FD
Sbjct: 292 EAGTLVYSTCSLTHAQNEDVVDQFLSENFSAELQEIEMAKDWPCRSGRTPKTLR---FDP 348
Query: 352 GMSYVSCKDVPKFRR 366
S S V K R+
Sbjct: 349 STSATSGLFVAKIRK 363
>AT5G66180.1 | Symbols: | S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein |
chr5:26448952-26450919 FORWARD LENGTH=395
Length = 395
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 15/135 (11%)
Query: 244 FDRILCDVPCSGDGTFRKAPKLLN-KWNT---------GTGNGLHNLQIIIAMRGVSLLK 293
+D++L D C+ DG+ + K W T T L LQ+ + G LLK
Sbjct: 253 YDKVLVDAECTHDGSIKHIQKFEQWGWKTLERRVLDAERTDTNLKALQLNLLRNGFRLLK 312
Query: 294 VGGRMVYSTCSMNPIENEAVVAEVL-RRCRGSLELVDVSSELP-QLVRRPGLKRWKVFDK 351
G +VYSTCS+ +NE VV + L L+ ++++ + P + R P R FD
Sbjct: 313 EAGTLVYSTCSLTHAQNEDVVDQFLSENFSAELQEIEMAKDWPCRSGRTPKTLR---FDP 369
Query: 352 GMSYVSCKDVPKFRR 366
S S V K R+
Sbjct: 370 STSATSGLFVAKIRK 384