Miyakogusa Predicted Gene

Lj6g3v0528590.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0528590.1 Non Chatacterized Hit- tr|J3N4T9|J3N4T9_ORYBR
Uncharacterized protein OS=Oryza brachyantha GN=OB10G2,53.26,4e-19,
,CUFF.58017.1
         (91 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39235.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   115   5e-27
AT3G05570.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   112   4e-26
AT2G21640.1 | Symbols:  | Encodes a protein of unknown function ...    81   2e-16

>AT4G39235.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT3G05570.1); Has 30201 Blast hits to 17322
          proteins in 780 species: Archae - 12; Bacteria - 1396;
          Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
          0; Other Eukaryotes - 2996 (source: NCBI BLink). |
          chr4:18268514-18269034 FORWARD LENGTH=86
          Length = 86

 Score =  115 bits (288), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 59/89 (66%), Positives = 70/89 (78%), Gaps = 5/89 (5%)

Query: 1  MSTQTSQPEKQSSSVATVASCRKKKSEEATFLEDVKDHIDEFINASMDEHKTCFKKTIQK 60
          M TQT+Q  K +     + SCRKK  ++ATF EDVKDHID+FI+ASMDEHK+CF+KTI+K
Sbjct: 1  METQTNQSPKPA-----MTSCRKKVKDDATFFEDVKDHIDDFIHASMDEHKSCFQKTIKK 55

Query: 61 MFGLSKAVAEKNSNAVKEVESSLPLQTTV 89
          MFGLSKAVAEK +   K VES LPLQTTV
Sbjct: 56 MFGLSKAVAEKQAVEAKGVESQLPLQTTV 84


>AT3G05570.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT4G39235.1); Has 73 Blast hits to 73 proteins in
          11 species: Archae - 0; Bacteria - 0; Metazoa - 0;
          Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes -
          0 (source: NCBI BLink). | chr3:1616265-1616636 REVERSE
          LENGTH=90
          Length = 90

 Score =  112 bits (281), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 59/90 (65%), Positives = 67/90 (74%), Gaps = 6/90 (6%)

Query: 3  TQTSQPEKQSSSVATVASCRKKKSEEATFLEDVKDHIDEFINASMDEHKTCFKKTIQKMF 62
          TQ   P K ++S     SCRKK  ++A FLEDVKDHID+FINASMD+HK CF KTI+KMF
Sbjct: 6  TQAENPPKPATS-----SCRKKTKDDANFLEDVKDHIDDFINASMDDHKNCFNKTIKKMF 60

Query: 63 GLSKAVAEK-NSNAVKEVESSLPLQTTVQD 91
          GLSKAVA+K  S A   VES LPLQTTV D
Sbjct: 61 GLSKAVADKQQSEAKGGVESYLPLQTTVSD 90


>AT2G21640.1 | Symbols:  | Encodes a protein of unknown function
           that is a marker for oxidative stress response. |
           chr2:9254985-9255453 FORWARD LENGTH=104
          Length = 104

 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 55/75 (73%), Gaps = 4/75 (5%)

Query: 19  ASCRKK-KSEEATFLEDVKDHIDEFINASMDEHKTCFKKTIQKMFG-LSK--AVAEKNSN 74
           +SCRK+ K + ATF  ++KDH+DEFI+ASMDEHKTCFK T+ K+FG  SK  AVAEK   
Sbjct: 28  SSCRKRVKDDNATFFANLKDHMDEFIHASMDEHKTCFKNTMDKIFGSFSKAEAVAEKQIE 87

Query: 75  AVKEVESSLPLQTTV 89
           A + VE   PLQT V
Sbjct: 88  AKEVVEIHSPLQTAV 102