Miyakogusa Predicted Gene

Lj6g3v0528580.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0528580.1 Non Chatacterized Hit- tr|D8UI90|D8UI90_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,26.92,0.00002,seg,NULL; TBCC,Tubulin binding cofactor C;
C_CAP_COFACTOR_C,C-CAP/cofactor C-like domain; Domain in ,CUFF.58016.1
         (353 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39920.1 | Symbols: POR, TFC C | C-CAP/cofactor C-like domain...   364   e-101
AT3G57890.1 | Symbols:  | Tubulin binding cofactor C domain-cont...    53   3e-07
AT3G57890.2 | Symbols:  | Tubulin binding cofactor C domain-cont...    53   3e-07

>AT4G39920.1 | Symbols: POR, TFC C | C-CAP/cofactor C-like
           domain-containing protein | chr4:18515882-18516919
           FORWARD LENGTH=345
          Length = 345

 Score =  364 bits (934), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/355 (58%), Positives = 250/355 (70%), Gaps = 24/355 (6%)

Query: 1   MDDDGIEKLTVSDDGEAEAALQKKHLSMLERLSKRHQQQPXXXXXXXXXXXXXXXX---- 56
           M+DDG   +  + D     ALQKKH  MLERLS RHQ +                     
Sbjct: 1   MEDDGQSSVAETLD----PALQKKHHDMLERLSARHQARKSDSPDSSSSSSSTLESTSSF 56

Query: 57  -XXXXDLKASIDSRLAESQ--SISSDPSQLKTHFNDITASISDLEKLVAENSYLLPSYDV 113
                D K SI+SR+AES+  S S+D S+LK+   +I+ +I +LEKL+AENSY LPSY+V
Sbjct: 57  LAKFSDSKRSIESRIAESRLASSSTDSSKLKSDLAEISVAIDNLEKLLAENSYFLPSYEV 116

Query: 114 RSSLKTVSDLKRSLDSLASELIPKKKFSFKSKNATAKRDKDSVVPE---PKQTPPPDRDS 170
           RSSLK VSDLK+SLD L+ EL+PKKKFSFKSK+ T K   +S +PE   P    PP    
Sbjct: 117 RSSLKIVSDLKQSLDILSGELVPKKKFSFKSKSTTKK--PESKLPEIQKPDVVLPP---- 170

Query: 171 VKSSFVP-RDSPGFRNETGRVLVEEFRGSEVGEFTVSDLDSCEVRIIGCVRALFVHRLKN 229
                VP RDSPG RN+ G  LV+ F GS +GEFT+SDLDSC+V++ G V ALF+HRLK 
Sbjct: 171 ---KLVPVRDSPGLRNKHGETLVKSFEGSSIGEFTLSDLDSCQVKLTGTVNALFLHRLKK 227

Query: 230 CRVYVGPVTGSVLIEGVEGCVFALASHQIRIHGARGSDFYLRVRSRPIIEDSNGVRFAPY 289
           C VY GPV GS+LI+ VE CV  LASHQIRIH AR SDFYLRVRSRPIIEDSNGVRFAPY
Sbjct: 228 CSVYTGPVIGSILIDDVEDCVLVLASHQIRIHCARKSDFYLRVRSRPIIEDSNGVRFAPY 287

Query: 290 CLSYQGIEEDLRGAGLDAETGNWANVDDFKWLRAVQSPNWSILPEDERIGIVDIS 344
           CL Y+GI+EDL+ AGL+ ET NWANVDDF+WLRAVQSPNWS+LPE+ER+ ++ IS
Sbjct: 288 CLDYKGIDEDLKTAGLEEETNNWANVDDFRWLRAVQSPNWSLLPEEERVSLLTIS 342


>AT3G57890.1 | Symbols:  | Tubulin binding cofactor C
           domain-containing protein | chr3:21438271-21441695
           FORWARD LENGTH=573
          Length = 573

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 11/118 (9%)

Query: 206 SDLDSCEVRIIGC----------VRALFVHRLKNCRVYVGPVTGSVLIEGVEGCVFALAS 255
           SDL    V+++ C          +R   VH   +  + +G V  ++ +E  E     +A+
Sbjct: 333 SDLRGRSVKVVNCHDSVIYLLAPLRYATVHGCSDTTIVLGAVGKAIKVEHCERVHVIVAA 392

Query: 256 HQIRIHGARGSDFYLRVRSRP-IIEDSNGVRFAPYCLSYQGIEEDLRGAGLDAETGNW 312
            ++ I   R   F+L V  RP I+ D++ ++ APY   Y  +EE +R  GL+     W
Sbjct: 393 KRVCIANCRECVFFLGVNQRPLIVGDNHKLQVAPYNTFYSHLEEHMREVGLEPTINKW 450


>AT3G57890.2 | Symbols:  | Tubulin binding cofactor C
           domain-containing protein | chr3:21438271-21441695
           FORWARD LENGTH=609
          Length = 609

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 11/118 (9%)

Query: 206 SDLDSCEVRIIGC----------VRALFVHRLKNCRVYVGPVTGSVLIEGVEGCVFALAS 255
           SDL    V+++ C          +R   VH   +  + +G V  ++ +E  E     +A+
Sbjct: 369 SDLRGRSVKVVNCHDSVIYLLAPLRYATVHGCSDTTIVLGAVGKAIKVEHCERVHVIVAA 428

Query: 256 HQIRIHGARGSDFYLRVRSRP-IIEDSNGVRFAPYCLSYQGIEEDLRGAGLDAETGNW 312
            ++ I   R   F+L V  RP I+ D++ ++ APY   Y  +EE +R  GL+     W
Sbjct: 429 KRVCIANCRECVFFLGVNQRPLIVGDNHKLQVAPYNTFYSHLEEHMREVGLEPTINKW 486