Miyakogusa Predicted Gene

Lj6g3v0528510.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0528510.1 tr|F2EJF8|F2EJF8_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,51.09,3e-19,Ribosomal
proteins S24e, L23 and L15e,Ribosomal protein L23/L15e core domain; no
description,Nucleot,CUFF.58011.1
         (111 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39880.1 | Symbols:  | Ribosomal protein L23/L15e family prot...   108   5e-25

>AT4G39880.1 | Symbols:  | Ribosomal protein L23/L15e family protein
           | chr4:18504601-18505137 FORWARD LENGTH=178
          Length = 178

 Score =  108 bits (271), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 51/94 (54%), Positives = 70/94 (74%)

Query: 1   MTHIAYLPMIPIMPKTSSDIKEISFKTLPSASKLEIKHVIESYYDLEVKKVRTLNMKGKK 60
           + H A LP+  +MP   ++I E + KT+PSASK+EIK V+ES Y  +V+KV TLNM GKK
Sbjct: 9   VVHFANLPIKLLMPAKLTNIHEFALKTIPSASKIEIKRVLESLYGFDVEKVNTLNMDGKK 68

Query: 61  KHSSGFLYAKPDYKKAYVTLKKPISLTQDIFPLR 94
           K   G L AK DYKKAYVTL+ P+S+++D+FP++
Sbjct: 69  KKRGGLLIAKADYKKAYVTLRSPLSISRDLFPVK 102