Miyakogusa Predicted Gene

Lj6g3v0528480.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0528480.1 Non Chatacterized Hit- tr|A3B9S0|A3B9S0_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,31.74,0.0000000000003,seg,NULL; TLD,TLDc; NUCLEOLAR
PROTEIN-RELATED,NULL; NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR
COACTIVATO,CUFF.58010.1
         (366 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39870.2 | Symbols:  | TLD-domain containing nucleolar protei...   305   3e-83
AT4G39870.1 | Symbols:  | TLD-domain containing nucleolar protei...   305   3e-83
AT2G05590.2 | Symbols:  | TLD-domain containing nucleolar protei...   203   2e-52
AT2G05590.1 | Symbols:  | TLD-domain containing nucleolar protei...   155   4e-38
AT5G06260.1 | Symbols:  | TLD-domain containing nucleolar protei...    65   9e-11

>AT4G39870.2 | Symbols:  | TLD-domain containing nucleolar protein |
           chr4:18502234-18504275 FORWARD LENGTH=394
          Length = 394

 Score =  305 bits (782), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 178/401 (44%), Positives = 229/401 (57%), Gaps = 43/401 (10%)

Query: 1   MGEKQSLRSKASHFVSDLTT-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAH 59
           MG+ +S RSKA HFV+DLT                                         
Sbjct: 1   MGKHKSFRSKAVHFVTDLTAGLLNPISDKPSSAHPPPPLPDEEDESKRNQLESTTAEQPK 60

Query: 60  DLVDGPDTSSFTAFLYSFLSSSDSGG-----------------------NCDVTAAAAGG 96
           DLVD PDTSSF+AFL S LSS                              D ++++A  
Sbjct: 61  DLVDEPDTSSFSAFLGSLLSSDPKDKRKDQDPEDEEDEEEDEEEDSEAETSDTSSSSANP 120

Query: 97  GILLDSVMKEDFR---VKRSLFSRTLG--LAIHQAVRMGGFRSKDRR-----DESEAEFD 146
                  MKE       K+S  S+        +QAV+  G + +        D+ E E+ 
Sbjct: 121 ----TRTMKETTSGGAAKKSFLSKYKQHFRNFYQAVKFPGVKERKGNSDVIPDDEETEYY 176

Query: 147 DGCGVEMRHFQXXXXXXXXXXXXXXXXXX-XXXSKLISDSVRNAVYDSLPAIIHGRKWLM 205
           DG  +EM+  Q                      S L+S+  R ++Y SLPA++ GRKW++
Sbjct: 177 DG--LEMKPMQNNNVKEEVTVVVQAIIPEISEPSLLLSEQSRRSLYTSLPALVQGRKWIL 234

Query: 206 LYSTWKHGISLATLYRRSMVWPGLSLLVVGDRKGAVFGAVVEAPLIASNKRKYQGTNNSF 265
           LYSTW+HGISL+TLYR+S++WPGLSLLVVGDRKG+VFG +VEAPLI ++K KYQGTN++F
Sbjct: 235 LYSTWRHGISLSTLYRKSLLWPGLSLLVVGDRKGSVFGGLVEAPLIPTDK-KYQGTNSTF 293

Query: 266 VFTNTSGCPVIYRPTGVNRYFTLCTSDFIAIGGGSHFALYLDGDLLNGSSSVSETYGNPC 325
           VFTN SG P IYRPTG NR++TLC+ +F+A+GGG  FALYLD +LL+GSS+ SETYGN C
Sbjct: 294 VFTNKSGQPTIYRPTGANRFYTLCSKEFLALGGGGRFALYLDSELLSGSSAYSETYGNSC 353

Query: 326 LAHSQEFEVKEVELWGFVYPSKYEEIMALSRKEEALGLCHW 366
           LA SQ+F+VKEVELWGFVY SKY+EI+A S+  E  GLC W
Sbjct: 354 LADSQDFDVKEVELWGFVYGSKYDEILAHSKTMEP-GLCRW 393


>AT4G39870.1 | Symbols:  | TLD-domain containing nucleolar protein |
           chr4:18502234-18504275 FORWARD LENGTH=394
          Length = 394

 Score =  305 bits (782), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 178/401 (44%), Positives = 229/401 (57%), Gaps = 43/401 (10%)

Query: 1   MGEKQSLRSKASHFVSDLTT-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAH 59
           MG+ +S RSKA HFV+DLT                                         
Sbjct: 1   MGKHKSFRSKAVHFVTDLTAGLLNPISDKPSSAHPPPPLPDEEDESKRNQLESTTAEQPK 60

Query: 60  DLVDGPDTSSFTAFLYSFLSSSDSGG-----------------------NCDVTAAAAGG 96
           DLVD PDTSSF+AFL S LSS                              D ++++A  
Sbjct: 61  DLVDEPDTSSFSAFLGSLLSSDPKDKRKDQDPEDEEDEEEDEEEDSEAETSDTSSSSANP 120

Query: 97  GILLDSVMKEDFR---VKRSLFSRTLG--LAIHQAVRMGGFRSKDRR-----DESEAEFD 146
                  MKE       K+S  S+        +QAV+  G + +        D+ E E+ 
Sbjct: 121 ----TRTMKETTSGGAAKKSFLSKYKQHFRNFYQAVKFPGVKERKGNSDVIPDDEETEYY 176

Query: 147 DGCGVEMRHFQXXXXXXXXXXXXXXXXXX-XXXSKLISDSVRNAVYDSLPAIIHGRKWLM 205
           DG  +EM+  Q                      S L+S+  R ++Y SLPA++ GRKW++
Sbjct: 177 DG--LEMKPMQNNNVKEEVTVVVQAIIPEISEPSLLLSEQSRRSLYTSLPALVQGRKWIL 234

Query: 206 LYSTWKHGISLATLYRRSMVWPGLSLLVVGDRKGAVFGAVVEAPLIASNKRKYQGTNNSF 265
           LYSTW+HGISL+TLYR+S++WPGLSLLVVGDRKG+VFG +VEAPLI ++K KYQGTN++F
Sbjct: 235 LYSTWRHGISLSTLYRKSLLWPGLSLLVVGDRKGSVFGGLVEAPLIPTDK-KYQGTNSTF 293

Query: 266 VFTNTSGCPVIYRPTGVNRYFTLCTSDFIAIGGGSHFALYLDGDLLNGSSSVSETYGNPC 325
           VFTN SG P IYRPTG NR++TLC+ +F+A+GGG  FALYLD +LL+GSS+ SETYGN C
Sbjct: 294 VFTNKSGQPTIYRPTGANRFYTLCSKEFLALGGGGRFALYLDSELLSGSSAYSETYGNSC 353

Query: 326 LAHSQEFEVKEVELWGFVYPSKYEEIMALSRKEEALGLCHW 366
           LA SQ+F+VKEVELWGFVY SKY+EI+A S+  E  GLC W
Sbjct: 354 LADSQDFDVKEVELWGFVYGSKYDEILAHSKTMEP-GLCRW 393


>AT2G05590.2 | Symbols:  | TLD-domain containing nucleolar protein |
           chr2:2067196-2068951 FORWARD LENGTH=303
          Length = 303

 Score =  203 bits (516), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 96/170 (56%), Positives = 124/170 (72%)

Query: 179 SKLISDSVRNAVYDSLPAIIHGRKWLMLYSTWKHGISLATLYRRSMVWPGLSLLVVGDRK 238
           S  I+ ++   ++ SLP I+ G KW++LYST KHGISL TL RRS   PG  LLV GD++
Sbjct: 132 SVFITANLFEFLHASLPNIVRGCKWILLYSTLKHGISLRTLLRRSGELPGPCLLVAGDKQ 191

Query: 239 GAVFGAVVEAPLIASNKRKYQGTNNSFVFTNTSGCPVIYRPTGVNRYFTLCTSDFIAIGG 298
           GAVFGA++E PL  + KRKYQGT+ +F+FT   G P I+RPTG NRY+ +C ++F+A GG
Sbjct: 192 GAVFGALLECPLQPTPKRKYQGTSQTFLFTTIYGEPRIFRPTGANRYYLMCMNEFLAFGG 251

Query: 299 GSHFALYLDGDLLNGSSSVSETYGNPCLAHSQEFEVKEVELWGFVYPSKY 348
           G +FAL LD DLL  +S  SET+GN CLA S EFE+K VELWGF + S+Y
Sbjct: 252 GGNFALCLDEDLLKATSGPSETFGNECLASSTEFELKNVELWGFAHASQY 301


>AT2G05590.1 | Symbols:  | TLD-domain containing nucleolar protein |
           chr2:2067196-2068650 FORWARD LENGTH=263
          Length = 263

 Score =  155 bits (393), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 73/132 (55%), Positives = 96/132 (72%)

Query: 179 SKLISDSVRNAVYDSLPAIIHGRKWLMLYSTWKHGISLATLYRRSMVWPGLSLLVVGDRK 238
           S  I+ ++   ++ SLP I+ G KW++LYST KHGISL TL RRS   PG  LLV GD++
Sbjct: 132 SVFITANLFEFLHASLPNIVRGCKWILLYSTLKHGISLRTLLRRSGELPGPCLLVAGDKQ 191

Query: 239 GAVFGAVVEAPLIASNKRKYQGTNNSFVFTNTSGCPVIYRPTGVNRYFTLCTSDFIAIGG 298
           GAVFGA++E PL  + KRKYQGT+ +F+FT   G P I+RPTG NRY+ +C ++F+A GG
Sbjct: 192 GAVFGALLECPLQPTPKRKYQGTSQTFLFTTIYGEPRIFRPTGANRYYLMCMNEFLAFGG 251

Query: 299 GSHFALYLDGDL 310
           G +FAL LD DL
Sbjct: 252 GGNFALCLDEDL 263


>AT5G06260.1 | Symbols:  | TLD-domain containing nucleolar protein |
           chr5:1902755-1904835 REVERSE LENGTH=424
          Length = 424

 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 13/159 (8%)

Query: 202 KWLMLYSTWKHGISLAT-LYRRSMVWPGLSLLVVGDRKGAVFGAVVEAPLIASNKRKYQG 260
           +W +LY +  HG S  T L   S      S+L++ D +G V+G     P        + G
Sbjct: 237 EWKLLYHSSVHGQSFNTFLGHTSNTGMSASVLIIKDTEGYVYGGYASQPW--ERYSDFYG 294

Query: 261 TNNSFVFTNTSGCPVIYRPTGVNRYFTLCTSDF--------IAIGGG-SHFALYLDGDLL 311
              SF+F   +    IYRPTG N     C ++F        I  GG  +HF L++     
Sbjct: 295 DMKSFLF-QLNPKAAIYRPTGANTNIQWCATNFTSENIPNGIGFGGKINHFGLFISASFD 353

Query: 312 NGSSSVSETYGNPCLAHSQEFEVKEVELWGFVYPSKYEE 350
            G +    T+G+P L+ +   + + +E WG V  S  ++
Sbjct: 354 QGQTFECTTFGSPSLSKTSRIQPEVIECWGIVQASNEQD 392