Miyakogusa Predicted Gene
- Lj6g3v0524040.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0524040.2 tr|C1K5B8|C1K5B8_WHEAT Chlorophyll a-b binding
protein OS=Triticum aestivum GN=CBP4 PE=2 SV=1,38.16,0.25,no
description,Chlorophyll a/b binding protein domain; Chlorophyll a-b
binding protein,Chlorophyll a,CUFF.58006.2
(160 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G40100.1 | Symbols: LHCB4.3 | light harvesting complex photos... 255 7e-69
AT5G01530.1 | Symbols: LHCB4.1 | light harvesting complex photos... 249 7e-67
AT3G08940.2 | Symbols: LHCB4.2 | light harvesting complex photos... 246 5e-66
AT3G54890.1 | Symbols: LHCA1 | photosystem I light harvesting co... 117 3e-27
AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll A/B-bi... 100 5e-22
AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B bi... 100 5e-22
AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyl... 100 5e-22
AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting chloro... 99 1e-21
AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light ha... 99 1e-21
AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | light-harvesting chlorop... 98 2e-21
AT1G15820.1 | Symbols: LHCB6, CP24 | light harvesting complex ph... 97 4e-21
AT3G54890.4 | Symbols: LHCA1 | photosystem I light harvesting co... 97 5e-21
AT4G10340.1 | Symbols: LHCB5 | light harvesting complex of photo... 94 3e-20
AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | photosystem II light har... 94 5e-20
AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | photosystem II light har... 94 5e-20
AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | photosystem II ... 93 1e-19
AT2G40100.2 | Symbols: LHCB4.3 | light harvesting complex photos... 86 2e-17
AT3G08940.1 | Symbols: LHCB4.2 | light harvesting complex photos... 82 1e-16
AT1G76570.1 | Symbols: | Chlorophyll A-B binding family protein... 81 2e-16
AT1G45474.2 | Symbols: LHCA5 | photosystem I light harvesting co... 74 4e-14
AT1G45474.1 | Symbols: LHCA5 | photosystem I light harvesting co... 74 4e-14
AT3G47470.1 | Symbols: LHCA4, CAB4 | light-harvesting chlorophyl... 74 5e-14
AT1G61520.2 | Symbols: LHCA3 | photosystem I light harvesting co... 72 2e-13
AT1G61520.3 | Symbols: LHCA3 | photosystem I light harvesting co... 71 3e-13
AT1G61520.1 | Symbols: LHCA3 | photosystem I light harvesting co... 71 3e-13
AT3G61470.1 | Symbols: LHCA2 | photosystem I light harvesting co... 69 9e-13
AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | photosystem I light harv... 64 6e-11
AT3G54890.2 | Symbols: LHCA1 | photosystem I light harvesting co... 59 1e-09
>AT2G40100.1 | Symbols: LHCB4.3 | light harvesting complex
photosystem II | chr2:16745884-16747190 FORWARD
LENGTH=276
Length = 276
Score = 255 bits (652), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 123/147 (83%), Positives = 138/147 (93%), Gaps = 1/147 (0%)
Query: 14 VFGIQRFRECEVIHGRWAMLGALGALSVEALTGVAWQDAGKVELVDGSSYLGLPLPFSIT 73
VFGIQRFRECE+IHGRWAMLG LGA++VEALTG+AWQDAGKVELV+GSSYLG PLPFS+T
Sbjct: 131 VFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLT 190
Query: 74 TLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLANDPEEKERLQLAEIKHSRLA 133
TLIWIEVLV+GYIEFQRN+ELDPEKR+YPGG +FDPLGLA DPE+ + L+LAEIKHSRLA
Sbjct: 191 TLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEIKHSRLA 249
Query: 134 MVVFLIFAIQAAVTGKGPISFLATFNK 160
MV FLIFA+QAA TGKGP+SFLATFN
Sbjct: 250 MVAFLIFALQAAFTGKGPVSFLATFNN 276
>AT5G01530.1 | Symbols: LHCB4.1 | light harvesting complex
photosystem II | chr5:209084-210243 FORWARD LENGTH=290
Length = 290
Score = 249 bits (635), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 123/146 (84%), Positives = 131/146 (89%)
Query: 12 SPVFGIQRFRECEVIHGRWAMLGALGALSVEALTGVAWQDAGKVELVDGSSYLGLPLPFS 71
S VFGIQRFRECE+IHGRWAML LGALSVE LTGV WQDAGKVELVDGSSYLG PLPFS
Sbjct: 128 SEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFS 187
Query: 72 ITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLANDPEEKERLQLAEIKHSR 131
I+TLIWIEVLVIGYIEFQRNAELD EKRLYPGGKFFDPLGLA DPE+ +LQLAEIKH+R
Sbjct: 188 ISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHAR 247
Query: 132 LAMVVFLIFAIQAAVTGKGPISFLAT 157
LAMV FL FA+QAA TGKGP++ AT
Sbjct: 248 LAMVAFLGFAVQAAATGKGPLNNWAT 273
>AT3G08940.2 | Symbols: LHCB4.2 | light harvesting complex
photosystem II | chr3:2717717-2718665 FORWARD LENGTH=287
Length = 287
Score = 246 bits (628), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 120/146 (82%), Positives = 132/146 (90%)
Query: 12 SPVFGIQRFRECEVIHGRWAMLGALGALSVEALTGVAWQDAGKVELVDGSSYLGLPLPFS 71
S VFG+QRFRECE+IHGRWAML LGA++VE LTGV WQDAGKVELVDGSSYLG PLPFS
Sbjct: 125 SEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFS 184
Query: 72 ITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLANDPEEKERLQLAEIKHSR 131
I+TLIWIEVLVIGYIEFQRNAELD EKRLYPGGKFFDPLGLA+DP +K +LQLAEIKH+R
Sbjct: 185 ISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHAR 244
Query: 132 LAMVVFLIFAIQAAVTGKGPISFLAT 157
LAMV FL FA+QAA TGKGP++ AT
Sbjct: 245 LAMVGFLGFAVQAAATGKGPLNNWAT 270
>AT3G54890.1 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339706-20340922 REVERSE
LENGTH=241
Length = 241
Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 96/145 (66%), Gaps = 5/145 (3%)
Query: 17 IQRFRECEVIHGRWAMLGALGALSVEALTGVAWQDAGKVELVDG--SSYLGLPLPF-SIT 73
++R++E E+IH RWAML G L EAL W A + + G ++YLG P+P+ ++
Sbjct: 80 LERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLP 139
Query: 74 TLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLANDPEEKERLQLAEIKHSRLA 133
T++ IE L I ++E QR+ E DPEK+ YPGG F DPLG + DP++ E L++ EIK+ RLA
Sbjct: 140 TILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAF-DPLGYSKDPKKLEELKVKEIKNGRLA 198
Query: 134 MVVFLIFAI-QAAVTGKGPISFLAT 157
++ F+ F + Q+A G GP+ LAT
Sbjct: 199 LLAFVGFCVQQSAYPGTGPLENLAT 223
>AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll
A/B-binding protein 2 | chr1:10475089-10475892 REVERSE
LENGTH=267
Length = 267
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 85/153 (55%), Gaps = 16/153 (10%)
Query: 19 RFRECEVIHGRWAMLGALGALSVE--ALTGV-----AWQDAGKVELVDGS-SYLGLPLPF 70
R RE EVIH RWAMLGALG + E A GV W AG DG YLG P
Sbjct: 94 RNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLV 153
Query: 71 SITTLIWI---EVLVIGYIEFQRNAELDP----EKRLYPGGKFFDPLGLANDPEEKERLQ 123
+++ I +V+++G +E R A P E LYPGG F DPLGLA DPE L+
Sbjct: 154 HAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELK 212
Query: 124 LAEIKHSRLAMVVFLIFAIQAAVTGKGPISFLA 156
+ E+K+ RLAM F +QA VTGKGPI LA
Sbjct: 213 VKELKNGRLAMFSMFGFFVQAIVTGKGPIENLA 245
>AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B
binding protein 3 | chr1:10472443-10473246 REVERSE
LENGTH=267
Length = 267
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 85/153 (55%), Gaps = 16/153 (10%)
Query: 19 RFRECEVIHGRWAMLGALGALSVE--ALTGV-----AWQDAGKVELVDGS-SYLGLPLPF 70
R RE EVIH RWAMLGALG + E A GV W AG DG YLG P
Sbjct: 94 RNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLV 153
Query: 71 SITTLIWI---EVLVIGYIEFQRNAELDP----EKRLYPGGKFFDPLGLANDPEEKERLQ 123
+++ I +V+++G +E R A P E LYPGG F DPLGLA DPE L+
Sbjct: 154 HAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELK 212
Query: 124 LAEIKHSRLAMVVFLIFAIQAAVTGKGPISFLA 156
+ E+K+ RLAM F +QA VTGKGPI LA
Sbjct: 213 VKELKNGRLAMFSMFGFFVQAIVTGKGPIENLA 245
>AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll
A/B binding protein 1 | chr1:10478071-10478874 FORWARD
LENGTH=267
Length = 267
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 85/153 (55%), Gaps = 16/153 (10%)
Query: 19 RFRECEVIHGRWAMLGALGALSVE--ALTGV-----AWQDAGKVELVDGS-SYLGLPLPF 70
R RE EVIH RWAMLGALG + E A GV W AG DG YLG P
Sbjct: 94 RNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLV 153
Query: 71 SITTLIWI---EVLVIGYIEFQRNAELDP----EKRLYPGGKFFDPLGLANDPEEKERLQ 123
+++ I +V+++G +E R A P E LYPGG F DPLGLA DPE L+
Sbjct: 154 HAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELK 212
Query: 124 LAEIKHSRLAMVVFLIFAIQAAVTGKGPISFLA 156
+ E+K+ RLAM F +QA VTGKGPI LA
Sbjct: 213 VKELKNGRLAMFSMFGFFVQAIVTGKGPIENLA 245
>AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting
chlorophyll-protein complex II subunit B1 |
chr2:14524818-14525618 FORWARD LENGTH=266
Length = 266
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 85/153 (55%), Gaps = 16/153 (10%)
Query: 19 RFRECEVIHGRWAMLGALGALSVEAL--TGV-----AWQDAGKVELVDGS-SYLGLPLPF 70
R RE EVIH RWAMLGALG + E L GV W AG DG YLG P
Sbjct: 93 RNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLV 152
Query: 71 SITTLIWI---EVLVIGYIEFQRNAELDP----EKRLYPGGKFFDPLGLANDPEEKERLQ 123
+++ I +V+++G +E R A P E LYPGG F DPLGLA DPE L+
Sbjct: 153 HAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELK 211
Query: 124 LAEIKHSRLAMVVFLIFAIQAAVTGKGPISFLA 156
+ E+K+ RLAM F +QA VTGKGP+ LA
Sbjct: 212 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light
harvesting complex gene B1B2 | chr2:14522716-14523513
REVERSE LENGTH=265
Length = 265
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 85/153 (55%), Gaps = 16/153 (10%)
Query: 19 RFRECEVIHGRWAMLGALGALSVE--ALTGV-----AWQDAGKVELVDGS-SYLGLPLPF 70
R RE EVIH RWAMLGALG + E A GV W AG DG YLG P
Sbjct: 92 RNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLV 151
Query: 71 SITTLIWI---EVLVIGYIEFQRNAELDP----EKRLYPGGKFFDPLGLANDPEEKERLQ 123
+++ I +V+++G +E R A P E LYPGG F DPLGLA DPE L+
Sbjct: 152 HAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELK 210
Query: 124 LAEIKHSRLAMVVFLIFAIQAAVTGKGPISFLA 156
+ E+K+ RLAM F +QA VTGKGP+ LA
Sbjct: 211 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | light-harvesting
chlorophyll B-binding protein 3 | chr5:22038424-22039383
FORWARD LENGTH=265
Length = 265
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 83/152 (54%), Gaps = 15/152 (9%)
Query: 19 RFRECEVIHGRWAMLGALGALSVEALTG--------VAWQDAGKVELVDGS-SYLGLP-- 67
+ R EVIHGRWAMLGA G ++ E L W AG +G YLG P
Sbjct: 91 KNRALEVIHGRWAMLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNL 150
Query: 68 -LPFSITTLIWIEVLVIGYIEFQRNAELD---PEKRLYPGGKFFDPLGLANDPEEKERLQ 123
SI ++ +V+++G +E R LD LYPGG++FDPLGLA+DP L+
Sbjct: 151 VHAQSILAVLGFQVILMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELK 210
Query: 124 LAEIKHSRLAMVVFLIFAIQAAVTGKGPISFL 155
+ EIK+ RLAM F +QA VTGKGP+ L
Sbjct: 211 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242
>AT1G15820.1 | Symbols: LHCB6, CP24 | light harvesting complex
photosystem II subunit 6 | chr1:5446685-5447676 REVERSE
LENGTH=258
Length = 258
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 92/176 (52%), Gaps = 42/176 (23%)
Query: 13 PVFGIQRFRECEVIHGRWAMLGALGALSVEALTGVAWQDAGKVELVDGSSYLGLPLPFSI 72
P F ++ +RE E+IHGRWAM LG +A +GVAW +AG PFS
Sbjct: 92 PAF-LKWYREAELIHGRWAMAAVLGIFVGQAWSGVAWFEAGAQPDAIA--------PFSF 142
Query: 73 TTLIWIEVLVIGYIEFQRNAE-LDPEKRL----------------------YPGGKFFDP 109
+L+ ++L++G++E +R + +P+ + YPGG+FFDP
Sbjct: 143 GSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFANYTGDQGYPGGRFFDP 202
Query: 110 LGLAN---------DPEEKERLQLAEIKHSRLAMVVFLIFAIQAAVTGKGPISFLA 156
LGLA D E+ ERL+LAEIKHSRLAMV LIF +A GK P+ L
Sbjct: 203 LGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAMLIFYFEAG-QGKTPLGALG 257
>AT3G54890.4 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339881-20340922 REVERSE
LENGTH=213
Length = 213
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 78/118 (66%), Gaps = 4/118 (3%)
Query: 17 IQRFRECEVIHGRWAMLGALGALSVEALTGVAWQDAGKVELVDG--SSYLGLPLPF-SIT 73
++R++E E+IH RWAML G L EAL W A + + G ++YLG P+P+ ++
Sbjct: 80 LERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLP 139
Query: 74 TLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLANDPEEKERLQLAEIKHSR 131
T++ IE L I ++E QR+ E DPEK+ YPGG FDPLG + DP++ E L++ EIK+ +
Sbjct: 140 TILAIEFLAIAFVEHQRSMEKDPEKKKYPGGA-FDPLGYSKDPKKLEELKVKEIKNGK 196
>AT4G10340.1 | Symbols: LHCB5 | light harvesting complex of
photosystem II 5 | chr4:6408200-6409496 FORWARD
LENGTH=280
Length = 280
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 89/149 (59%), Gaps = 13/149 (8%)
Query: 19 RFRECEVIHGRWAMLGALGALSVEALTGVA--------WQDAGKVELVDGSS--YLGLPL 68
+++ E+IH RWAMLGA G + EAL W G + L+DG++ Y G +
Sbjct: 109 KYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLNYFGKNI 167
Query: 69 PFSITTLIWIEVLVIGYIEFQR-NAELDPEKRLYPGGKFFDPLGLANDPEEKERLQLAEI 127
P ++ + EV+++G E+ R LD E +L+PGG F DPLGLA DPE+ L++ EI
Sbjct: 168 PINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPF-DPLGLAKDPEQGALLKVKEI 226
Query: 128 KHSRLAMVVFLIFAIQAAVTGKGPISFLA 156
K+ RLAM L F IQA VTG+GP+ LA
Sbjct: 227 KNGRLAMFAMLGFFIQAYVTGEGPVENLA 255
>AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | photosystem II light
harvesting complex gene 2.1 | chr2:1823449-1824331
REVERSE LENGTH=265
Length = 265
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 85/154 (55%), Gaps = 21/154 (13%)
Query: 19 RFRECEVIHGRWAMLGALGALSVEALT--GV-----AWQDAGKVELVDGS-SYLGLPLPF 70
+ RE EVIH RWAMLGALG E L+ GV W AG +G YLG P
Sbjct: 93 KNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLI 152
Query: 71 SITTL--IW-IEVLVIGYIEFQR------NAELDPEKRLYPGGKFFDPLGLANDPEEKER 121
++ IW ++V+++G+IE R LDP LYPGG F DPL LA DPE
Sbjct: 153 HAQSILAIWAVQVVLMGFIEGYRIGGGPLGEGLDP---LYPGGAF-DPLNLAEDPEAFSE 208
Query: 122 LQLAEIKHSRLAMVVFLIFAIQAAVTGKGPISFL 155
L++ E+K+ RLAM F +QA VTGKGPI L
Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
>AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | photosystem II light
harvesting complex gene 2.2 | chr2:1799436-1800329
REVERSE LENGTH=265
Length = 265
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 85/154 (55%), Gaps = 21/154 (13%)
Query: 19 RFRECEVIHGRWAMLGALGALSVEALT--GV-----AWQDAGKVELVDGS-SYLGLPLPF 70
+ RE EVIH RWAMLGALG E L+ GV W AG +G YLG P
Sbjct: 93 KNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLI 152
Query: 71 SITTL--IW-IEVLVIGYIEFQR------NAELDPEKRLYPGGKFFDPLGLANDPEEKER 121
++ IW ++V+++G+IE R LDP LYPGG F DPL LA DPE
Sbjct: 153 HAQSILAIWAVQVVLMGFIEGYRIGGGPLGEGLDP---LYPGGAF-DPLNLAEDPEAFSE 208
Query: 122 LQLAEIKHSRLAMVVFLIFAIQAAVTGKGPISFL 155
L++ E+K+ RLAM F +QA VTGKGPI L
Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
>AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | photosystem II
light harvesting complex gene 2.3 |
chr3:10256002-10256921 FORWARD LENGTH=266
Length = 266
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 84/154 (54%), Gaps = 21/154 (13%)
Query: 19 RFRECEVIHGRWAMLGALGALSVEALT--GV-----AWQDAGKVELVDGS-SYLGLPLPF 70
+ RE EVIH RWAMLGALG E L+ GV W AG +G YLG P
Sbjct: 94 KNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLI 153
Query: 71 SITTLIWI---EVLVIGYIEFQR------NAELDPEKRLYPGGKFFDPLGLANDPEEKER 121
+++ I +V+++G+IE R LDP LYPGG F DPL LA DPE
Sbjct: 154 HAQSILAIWACQVVLMGFIEGYRIGGGPLGEGLDP---LYPGGAF-DPLNLAEDPEAFSE 209
Query: 122 LQLAEIKHSRLAMVVFLIFAIQAAVTGKGPISFL 155
L++ E+K+ RLAM F +QA VTGKGPI L
Sbjct: 210 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 243
>AT2G40100.2 | Symbols: LHCB4.3 | light harvesting complex
photosystem II | chr2:16745884-16746545 FORWARD
LENGTH=185
Length = 185
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 42/43 (97%)
Query: 14 VFGIQRFRECEVIHGRWAMLGALGALSVEALTGVAWQDAGKVE 56
VFGIQRFRECE+IHGRWAMLG LGA++VEALTG+AWQDAGKVE
Sbjct: 131 VFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVE 173
>AT3G08940.1 | Symbols: LHCB4.2 | light harvesting complex
photosystem II | chr3:2717717-2718400 FORWARD LENGTH=227
Length = 227
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/59 (69%), Positives = 46/59 (77%)
Query: 12 SPVFGIQRFRECEVIHGRWAMLGALGALSVEALTGVAWQDAGKVELVDGSSYLGLPLPF 70
S VFG+QRFRECE+IHGRWAML LGA++VE LTGV WQDAGKV + SS L L L F
Sbjct: 125 SEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVSPLFFSSLLRLCLAF 183
>AT1G76570.1 | Symbols: | Chlorophyll A-B binding family protein |
chr1:28729132-28730754 FORWARD LENGTH=327
Length = 327
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 23/161 (14%)
Query: 18 QRFRECEVIHGRWAMLGALGALSVEA--LTGV------AWQDAGKVELVDGS-SYLGLPL 68
++ E++H RWAML ALGAL E LTG W G +L + YLG+P
Sbjct: 149 DKYFNFEILHARWAMLAALGALIPEVFDLTGTFHFAEPVWWRVGYSKLQGETLEYLGIPG 208
Query: 69 PF-----SITTLIWIEVLVIGYIEFQRNAELD---------PEKRLYPGGKFFDPLGLAN 114
+ + +VL++ E+ R ++ P YPGG FDPL L+
Sbjct: 209 LHVAGSQGVIVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGTLFDPLNLSE 268
Query: 115 DPEEKERLQLAEIKHSRLAMVVFLIFAIQAAVTGKGPISFL 155
DP E L++ EIK+ RLAMV +L F QAA TGKGP+ L
Sbjct: 269 DPVAFEDLKVKEIKNGRLAMVAWLGFYAQAAFTGKGPVQNL 309
>AT1G45474.2 | Symbols: LHCA5 | photosystem I light harvesting
complex gene 5 | chr1:17179353-17180439 FORWARD
LENGTH=256
Length = 256
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 79/162 (48%), Gaps = 36/162 (22%)
Query: 20 FRECEVIHGRWAMLGALGALSVEAL--TGV----AWQDAGKVELVDGSSYLGLPLPFSIT 73
+ + E++H R+AMLG G L + L TG+ W +AG V+ S+
Sbjct: 84 YVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFAST----------K 133
Query: 74 TLIWIEVLVIGYIEFQR--------------------NAELDPEKRLYPGGKFFDPLGLA 113
TLI ++ L++G+ E +R A L+ + YPGG +PLGLA
Sbjct: 134 TLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLA 193
Query: 114 NDPEEKERLQLAEIKHSRLAMVVFLIFAIQAAVTGKGPISFL 155
D + +L EIK+ RLAM+ L F +QA+VT GPI L
Sbjct: 194 KDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNL 235
>AT1G45474.1 | Symbols: LHCA5 | photosystem I light harvesting
complex gene 5 | chr1:17179353-17180439 FORWARD
LENGTH=256
Length = 256
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 79/162 (48%), Gaps = 36/162 (22%)
Query: 20 FRECEVIHGRWAMLGALGALSVEAL--TGV----AWQDAGKVELVDGSSYLGLPLPFSIT 73
+ + E++H R+AMLG G L + L TG+ W +AG V+ S+
Sbjct: 84 YVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFAST----------K 133
Query: 74 TLIWIEVLVIGYIEFQR--------------------NAELDPEKRLYPGGKFFDPLGLA 113
TLI ++ L++G+ E +R A L+ + YPGG +PLGLA
Sbjct: 134 TLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLA 193
Query: 114 NDPEEKERLQLAEIKHSRLAMVVFLIFAIQAAVTGKGPISFL 155
D + +L EIK+ RLAM+ L F +QA+VT GPI L
Sbjct: 194 KDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNL 235
>AT3G47470.1 | Symbols: LHCA4, CAB4 | light-harvesting
chlorophyll-protein complex I subunit A4 |
chr3:17493622-17494773 REVERSE LENGTH=251
Length = 251
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 74/159 (46%), Gaps = 39/159 (24%)
Query: 20 FRECEVIHGRWAMLGALGALSVEALTGVA------WQDAGKVELVDGSSYLGLPLPFSIT 73
F + E+++GRWAMLG G L E T + W DAGK + SS
Sbjct: 92 FVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSS----------- 140
Query: 74 TLIWIEVLVIGYIEFQR--------NAELDPEKRLY---------PGGKFFDPLGLANDP 116
TL IE ++ Y+E +R + DP + Y PGG F+PL A
Sbjct: 141 TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGG-IFNPLNFAPTQ 199
Query: 117 EEKERLQLAEIKHSRLAMVVFLIFAIQAAVTGKGPISFL 155
E KE+ E+ + RLAM+ FL F +Q VTGKGP L
Sbjct: 200 EAKEK----ELANGRLAMLAFLGFVVQHNVTGKGPFENL 234
>AT1G61520.2 | Symbols: LHCA3 | photosystem I light harvesting
complex gene 3 | chr1:22700493-22701149 FORWARD
LENGTH=218
Length = 218
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 77/160 (48%), Gaps = 33/160 (20%)
Query: 24 EVIHGRWAMLGALGALSVEAL---------TGVAWQDAGKVELVDGSSYLGLPLPFSITT 74
E+I+GR+AMLGA GA++ E L T + W G + +Y T
Sbjct: 45 EIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWA-----DNYT 99
Query: 75 LIWIEVLVIGYIEFQRNAE------------LDPEKRL-------YPGGKFFDPLGLAND 115
L +E+ ++G+ E +R + L EK L YPGG FF+PLG D
Sbjct: 100 LFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKD 159
Query: 116 PEEKERLQLAEIKHSRLAMVVFLIFAIQAAVTGKGPISFL 155
+ + L+L E+K+ RLAM+ L + IQ VTG GP L
Sbjct: 160 EKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNL 199
>AT1G61520.3 | Symbols: LHCA3 | photosystem I light harvesting
complex gene 3 | chr1:22700152-22701149 FORWARD
LENGTH=273
Length = 273
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 77/160 (48%), Gaps = 33/160 (20%)
Query: 24 EVIHGRWAMLGALGALSVEAL---------TGVAWQDAGKVELVDGSSYLGLPLPFSITT 74
E+I+GR+AMLGA GA++ E L T + W G + +Y T
Sbjct: 100 EIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWA-----DNYT 154
Query: 75 LIWIEVLVIGYIEFQRNAE------------LDPEKRL-------YPGGKFFDPLGLAND 115
L +E+ ++G+ E +R + L EK L YPGG FF+PLG D
Sbjct: 155 LFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKD 214
Query: 116 PEEKERLQLAEIKHSRLAMVVFLIFAIQAAVTGKGPISFL 155
+ + L+L E+K+ RLAM+ L + IQ VTG GP L
Sbjct: 215 EKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNL 254
>AT1G61520.1 | Symbols: LHCA3 | photosystem I light harvesting
complex gene 3 | chr1:22700152-22701149 FORWARD
LENGTH=273
Length = 273
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 77/160 (48%), Gaps = 33/160 (20%)
Query: 24 EVIHGRWAMLGALGALSVEAL---------TGVAWQDAGKVELVDGSSYLGLPLPFSITT 74
E+I+GR+AMLGA GA++ E L T + W G + +Y T
Sbjct: 100 EIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWA-----DNYT 154
Query: 75 LIWIEVLVIGYIEFQRNAE------------LDPEKRL-------YPGGKFFDPLGLAND 115
L +E+ ++G+ E +R + L EK L YPGG FF+PLG D
Sbjct: 155 LFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKD 214
Query: 116 PEEKERLQLAEIKHSRLAMVVFLIFAIQAAVTGKGPISFL 155
+ + L+L E+K+ RLAM+ L + IQ VTG GP L
Sbjct: 215 EKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNL 254
>AT3G61470.1 | Symbols: LHCA2 | photosystem I light harvesting
complex gene 2 | chr3:22745736-22747032 FORWARD
LENGTH=257
Length = 257
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 76/158 (48%), Gaps = 35/158 (22%)
Query: 22 ECEVIHGRWAMLGALGALSVEALTGV------AWQDAGKVELVDGSSYLGLPLPFSITTL 75
+ E++H RWAMLGA G E LT + +W AG+ E TTL
Sbjct: 92 QAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDK-----------TTL 140
Query: 76 IWIEVLVIGYIEFQRNAELD-----------PEKRL------YPGGKFFDPLGLAN-DPE 117
+E+++IG+ E +R A++ P +L YPGG +FDPLG + P
Sbjct: 141 FVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPA 200
Query: 118 EKERLQLAEIKHSRLAMVVFLIFAIQAAVTGKGPISFL 155
+ + L+ EIK+ RLAM+ + Q TG GPI L
Sbjct: 201 KLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL 238
>AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | photosystem I light
harvesting complex gene 6 | chr1:6612806-6613799 FORWARD
LENGTH=270
Length = 270
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 75/163 (46%), Gaps = 35/163 (21%)
Query: 17 IQRFRECEVIHGRWAMLGALGALSVEALT------GVAWQDAGKVELVDGSSYLGLPLPF 70
++ F + E+IH RWAML G + E L +W DAG E S
Sbjct: 100 LKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREYFADS--------- 150
Query: 71 SITTLIWIEVLVIGYIEFQRNAEL----------------DPEKRL-YPGGKFFDPLGLA 113
TTL +++++G+ E +R A+L +P+ + YPGG +FD +
Sbjct: 151 --TTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWG 208
Query: 114 -NDPEEKERLQLAEIKHSRLAMVVFLIFAIQAAVTGKGPISFL 155
PE L+ EIK+ RLAM+ FL F QA T + PI L
Sbjct: 209 RGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPIENL 251
>AT3G54890.2 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339706-20340922 REVERSE
LENGTH=207
Length = 207
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 70/145 (48%), Gaps = 39/145 (26%)
Query: 17 IQRFRECEVIHGRWAMLGALGALSVEALTGVAWQDAGKVELVDG--SSYLGLPLPF-SIT 73
++R++E E+IH RWAML G L EAL W A + + G ++YLG P+P+ ++
Sbjct: 80 LERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLP 139
Query: 74 TLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLANDPEEKERLQLAEIKHSRLA 133
T++ IE L I + L++ EIK+ RLA
Sbjct: 140 TILAIEFLAIAF-----------------------------------ELKVKEIKNGRLA 164
Query: 134 MVVFLIFAI-QAAVTGKGPISFLAT 157
++ F+ F + Q+A G GP+ LAT
Sbjct: 165 LLAFVGFCVQQSAYPGTGPLENLAT 189