Miyakogusa Predicted Gene
- Lj6g3v0519480.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0519480.2 Non Chatacterized Hit- tr|B9RMM4|B9RMM4_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,46.36,3e-17,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.57971.2
(362 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G40070.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 160 1e-39
AT2G40070.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 114 1e-25
AT3G09000.1 | Symbols: | proline-rich family protein | chr3:274... 94 2e-19
AT1G27850.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 67 3e-11
AT2G38160.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 62 7e-10
AT2G38160.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 62 7e-10
AT3G08670.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 49 8e-06
>AT2G40070.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: proline-rich family protein (TAIR:AT3G09000.1); Has
35333 Blast hits to 34131 proteins in 2444 species:
Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi -
991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
(source: NCBI BLink). | chr2:16728378-16731160 REVERSE
LENGTH=607
Length = 607
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/163 (55%), Positives = 109/163 (66%), Gaps = 9/163 (5%)
Query: 1 MNRSFRAQESQM-QAALKQREQQFGGLRGSVMKEKDEELALFLEMKKREKERXXXXXXXX 59
MNRSFRA+ES + +A +QR+Q LR S+M EKDEEL+LFLEM++REKE+
Sbjct: 1 MNRSFRAKESLLLDSAERQRQQ----LRASMMAEKDEELSLFLEMRRREKEQDNLLLNNN 56
Query: 60 XXX-XXXXGSNPSTSSIFNIPASAPIPVRKNGTDDFLNSENDKNDYDWLLTPPGTPLFPS 118
GS TS +FNI + AP P RK DDFLNSE DKNDY+WLLTPPGTPLFPS
Sbjct: 57 PDEFETPLGSKHGTSPVFNISSGAP-PSRKAAPDDFLNSEGDKNDYEWLLTPPGTPLFPS 115
Query: 119 LEMESRKTVMSQLGSGNPASRPVALKSRLGNHQSEPAGRTSLV 161
LEMES +T+MSQ +G+ SRP L SRL N +E A R L
Sbjct: 116 LEMESHRTMMSQ--TGDSKSRPATLTSRLANSSTESAARNHLT 156
>AT2G40070.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 17 plant
structures; EXPRESSED DURING: 7 growth stages; BEST
Arabidopsis thaliana protein match is: proline-rich
family protein (TAIR:AT3G09000.1); Has 108635 Blast hits
to 60786 proteins in 2176 species: Archae - 287;
Bacteria - 15142; Metazoa - 39415; Fungi - 26849; Plants
- 4416; Viruses - 2864; Other Eukaryotes - 19662
(source: NCBI BLink). | chr2:16728378-16731040 REVERSE
LENGTH=567
Length = 567
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/95 (62%), Positives = 67/95 (70%), Gaps = 3/95 (3%)
Query: 67 GSNPSTSSIFNIPASAPIPVRKNGTDDFLNSENDKNDYDWLLTPPGTPLFPSLEMESRKT 126
GS TS +FNI + AP P RK DDFLNSE DKNDY+WLLTPPGTPLFPSLEMES +T
Sbjct: 25 GSKHGTSPVFNISSGAP-PSRKAAPDDFLNSEGDKNDYEWLLTPPGTPLFPSLEMESHRT 83
Query: 127 VMSQLGSGNPASRPVALKSRLGNHQSEPAGRTSLV 161
+MSQ +G+ SRP L SRL N +E A R L
Sbjct: 84 MMSQ--TGDSKSRPATLTSRLANSSTESAARNHLT 116
>AT3G09000.1 | Symbols: | proline-rich family protein |
chr3:2746014-2748326 FORWARD LENGTH=541
Length = 541
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 75/129 (58%), Gaps = 10/129 (7%)
Query: 30 VMKEKDEELALFLEMKKREKERXXXX-----XXXXXXXXXXXGSNPSTSSIFNIPASAPI 84
+ ++DEEL+LFLEM++REKE + + S + +S
Sbjct: 2 LTHDRDEELSLFLEMRRREKEHRADSLLTGSDNVSINATLTAAAAAALSGVSETASSQRY 61
Query: 85 PVRKNGTDDFLNSENDKNDYDWLLTPPGTPLFPSLEMESRKTVMSQLGSGNPASRPVALK 144
P+R+ ++FL SEN+K+DYDWLLTPPGTP F E ES ++VM+Q + P SRP LK
Sbjct: 62 PLRRTAAENFLYSENEKSDYDWLLTPPGTPQF---EKESHRSVMNQHDA--PNSRPTVLK 116
Query: 145 SRLGNHQSE 153
SRLGN + +
Sbjct: 117 SRLGNCRED 125
>AT1G27850.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: plasma membrane;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G40070.1); Has 9215 Blast
hits to 5316 proteins in 473 species: Archae - 6;
Bacteria - 773; Metazoa - 3392; Fungi - 1710; Plants -
539; Viruses - 143; Other Eukaryotes - 2652 (source:
NCBI BLink). | chr1:9699265-9703701 FORWARD LENGTH=1148
Length = 1148
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 28 GSVMKEKDEELALFLEMKKREKERXXXXXXXXXXXXXXXGSNPSTSSIFNIPASAPIPVR 87
G + ++KD++LALF EM+ +KER + S F IP
Sbjct: 29 GILFRDKDDDLALFSEMQ--DKERDSFLLQSSDDLEDVFSTKLKHFSEFTIPV------- 79
Query: 88 KNGTDDFLNSENDKNDYDWLLTPPGTPLFPSLE 120
+ + L +E DKNDYDWLLTPP TPLFPSL+
Sbjct: 80 QGESSRLLTAEGDKNDYDWLLTPPDTPLFPSLD 112
>AT2G38160.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 9 plant
structures; EXPRESSED DURING: 4 anthesis, F mature
embryo stage, petal differentiation and expansion stage,
E expanded cotyledon stage, D bilateral stage; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G40070.2). | chr2:15986643-15988464 REVERSE
LENGTH=314
Length = 314
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 30 VMKEKDEELALFLEMKKREKERXXXXXXXXXXXXXXXGSNPSTSSIFNIPASAPIPVRKN 89
V+++ DEEL+LFLEM++REK + S S + ++ + +R++
Sbjct: 6 VVRDGDEELSLFLEMRRREKLQGVSSLSQPGANSVEKTSTKS----LELLKTSCVKLRRS 61
Query: 90 GTDDFLNSENDKNDYDWLLTPPGTPLF 116
+ FL+SENDK+DY+WLL P L
Sbjct: 62 SVEKFLDSENDKSDYEWLLAAPEITLL 88
>AT2G38160.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G40070.2); Has 972 Blast hits to 731 proteins
in 211 species: Archae - 0; Bacteria - 236; Metazoa -
194; Fungi - 201; Plants - 218; Viruses - 32; Other
Eukaryotes - 91 (source: NCBI BLink). |
chr2:15986643-15988464 REVERSE LENGTH=314
Length = 314
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 30 VMKEKDEELALFLEMKKREKERXXXXXXXXXXXXXXXGSNPSTSSIFNIPASAPIPVRKN 89
V+++ DEEL+LFLEM++REK + S S + ++ + +R++
Sbjct: 6 VVRDGDEELSLFLEMRRREKLQGVSSLSQPGANSVEKTSTKS----LELLKTSCVKLRRS 61
Query: 90 GTDDFLNSENDKNDYDWLLTPPGTPLF 116
+ FL+SENDK+DY+WLL P L
Sbjct: 62 SVEKFLDSENDKSDYEWLLAAPEITLL 88
>AT3G08670.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G51540.1); Has 48380 Blast hits to 29827
proteins in 1356 species: Archae - 46; Bacteria - 5589;
Metazoa - 17361; Fungi - 13192; Plants - 2237; Viruses -
905; Other Eukaryotes - 9050 (source: NCBI BLink). |
chr3:2633946-2636536 FORWARD LENGTH=567
Length = 567
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Query: 90 GTDDFLNS-ENDKNDYDWLLTPPGTPL 115
G DD L+S E KNDYDWLLTPPGTPL
Sbjct: 83 GKDDLLSSAEGGKNDYDWLLTPPGTPL 109