Miyakogusa Predicted Gene
- Lj6g3v0497330.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0497330.1 tr|I3T625|I3T625_LOTJA Ribosomal protein OS=Lotus
japonicus PE=2 SV=1,99.52,0,Ribosomal protein L1,Ribosomal protein L1,
superfamily; no description,Ribosomal protein L1, 2-layer,CUFF.58300.1
(210 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G27530.2 | Symbols: PGY1 | Ribosomal protein L1p/L10e family ... 351 2e-97
AT2G27530.1 | Symbols: PGY1 | Ribosomal protein L1p/L10e family ... 351 2e-97
AT1G08360.1 | Symbols: | Ribosomal protein L1p/L10e family | ch... 350 3e-97
AT5G22440.2 | Symbols: | Ribosomal protein L1p/L10e family | ch... 349 7e-97
AT5G22440.1 | Symbols: | Ribosomal protein L1p/L10e family | ch... 349 7e-97
AT2G42650.1 | Symbols: | Ribosomal protein L1p/L10e family | ch... 52 4e-07
AT3G58660.1 | Symbols: | Ribosomal protein L1p/L10e family | ch... 49 3e-06
>AT2G27530.2 | Symbols: PGY1 | Ribosomal protein L1p/L10e family |
chr2:11763443-11764570 REVERSE LENGTH=216
Length = 216
Score = 351 bits (900), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 172/210 (81%), Positives = 183/210 (87%)
Query: 1 MSKLQNDAVREAISGIMTDSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
MSKLQ++AVREAI+ I S+EK R FVET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1 MSKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
Query: 61 KMKICMLGDAQHVEEAEKIGLDWMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIP 120
KMKICMLGDAQHVEEAEK+GL MDVE YHAFLASE+VIKQIP
Sbjct: 61 KMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIP 120
Query: 121 RLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQ 180
RLLGPGLNKAGKFPTLV+HQESLEAKVNETKA VKFQLKKVLCMGVAVGN+SMEEKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQ 180
Query: 181 NVQLSVNFLVSLLKKNWQNVRCLYLKSTMG 210
NVQ+SVNFLVSLLKKNWQNVRCLYLKSTMG
Sbjct: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMG 210
>AT2G27530.1 | Symbols: PGY1 | Ribosomal protein L1p/L10e family |
chr2:11763443-11764570 REVERSE LENGTH=216
Length = 216
Score = 351 bits (900), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 172/210 (81%), Positives = 183/210 (87%)
Query: 1 MSKLQNDAVREAISGIMTDSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
MSKLQ++AVREAI+ I S+EK R FVET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1 MSKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
Query: 61 KMKICMLGDAQHVEEAEKIGLDWMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIP 120
KMKICMLGDAQHVEEAEK+GL MDVE YHAFLASE+VIKQIP
Sbjct: 61 KMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIP 120
Query: 121 RLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQ 180
RLLGPGLNKAGKFPTLV+HQESLEAKVNETKA VKFQLKKVLCMGVAVGN+SMEEKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQ 180
Query: 181 NVQLSVNFLVSLLKKNWQNVRCLYLKSTMG 210
NVQ+SVNFLVSLLKKNWQNVRCLYLKSTMG
Sbjct: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMG 210
>AT1G08360.1 | Symbols: | Ribosomal protein L1p/L10e family |
chr1:2636231-2637694 FORWARD LENGTH=216
Length = 216
Score = 350 bits (899), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 172/210 (81%), Positives = 183/210 (87%)
Query: 1 MSKLQNDAVREAISGIMTDSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
MSKLQ++AVREAI+ I S+ K R FVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1 MSKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
Query: 61 KMKICMLGDAQHVEEAEKIGLDWMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIP 120
KMKICMLGDAQHVEEAEK+GL+ MDVE YHAFLASE+VIKQIP
Sbjct: 61 KMKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIP 120
Query: 121 RLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQ 180
RLLGPGLNKAGKFPTLV+HQESLE+KVNETKA VKFQLKKVLCMGVAVGN+SMEEKQIFQ
Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQ 180
Query: 181 NVQLSVNFLVSLLKKNWQNVRCLYLKSTMG 210
NVQ+SVNFLVSLLKKNWQNVRCLYLKSTMG
Sbjct: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMG 210
>AT5G22440.2 | Symbols: | Ribosomal protein L1p/L10e family |
chr5:7435328-7436486 REVERSE LENGTH=217
Length = 217
Score = 349 bits (896), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 173/211 (81%), Positives = 184/211 (87%), Gaps = 1/211 (0%)
Query: 1 MSKLQNDAVREAISGIMTDSKE-KNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 59
MSKLQ++AVREAIS I+T KE K R F ETIELQIGLKNYDPQKDKRFSGSVKLPH+PR
Sbjct: 1 MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPR 60
Query: 60 PKMKICMLGDAQHVEEAEKIGLDWMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQI 119
PKMKICMLGDAQHVEEAEKIGL+ MDVE +HAFLASE+VIKQI
Sbjct: 61 PKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQI 120
Query: 120 PRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIF 179
PRLLGPGLNKAGKFPTLV+HQESLE+KVNETKA VKFQLKKVLCMGVAVGN+SMEEKQIF
Sbjct: 121 PRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIF 180
Query: 180 QNVQLSVNFLVSLLKKNWQNVRCLYLKSTMG 210
QNVQ+SVNFLVSLLKKNWQNVRCLYLKSTMG
Sbjct: 181 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMG 211
>AT5G22440.1 | Symbols: | Ribosomal protein L1p/L10e family |
chr5:7435328-7436486 REVERSE LENGTH=217
Length = 217
Score = 349 bits (896), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 173/211 (81%), Positives = 184/211 (87%), Gaps = 1/211 (0%)
Query: 1 MSKLQNDAVREAISGIMTDSKE-KNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 59
MSKLQ++AVREAIS I+T KE K R F ETIELQIGLKNYDPQKDKRFSGSVKLPH+PR
Sbjct: 1 MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPR 60
Query: 60 PKMKICMLGDAQHVEEAEKIGLDWMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQI 119
PKMKICMLGDAQHVEEAEKIGL+ MDVE +HAFLASE+VIKQI
Sbjct: 61 PKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQI 120
Query: 120 PRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIF 179
PRLLGPGLNKAGKFPTLV+HQESLE+KVNETKA VKFQLKKVLCMGVAVGN+SMEEKQIF
Sbjct: 121 PRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIF 180
Query: 180 QNVQLSVNFLVSLLKKNWQNVRCLYLKSTMG 210
QNVQ+SVNFLVSLLKKNWQNVRCLYLKSTMG
Sbjct: 181 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMG 211
>AT2G42650.1 | Symbols: | Ribosomal protein L1p/L10e family |
chr2:17765530-17766648 FORWARD LENGTH=372
Length = 372
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 106 YHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQE-SLEAKVNETKAMVKFQLKKVLCM 164
Y F + VI +P+L+G ++ K P + + + + ++ + F ++ C
Sbjct: 128 YDMFFSDRRVIPMLPKLIGKKFFQSKKTPVAIDLKHMNWKEQIEKACGAAMFFMRTGSCS 187
Query: 165 GVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLK 206
+ V +SME I +NV ++N +V +L W+ +R L+LK
Sbjct: 188 AIKVAKLSMESDDIVENVTATLNGVVDVLPSRWKYIRSLHLK 229
>AT3G58660.1 | Symbols: | Ribosomal protein L1p/L10e family |
chr3:21701574-21702914 FORWARD LENGTH=446
Length = 446
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 106 YHAFLASEAVIKQIPRLLGPGLNKAGKFP-TLVTHQESLEAKVNETKAMVKFQLKKVLCM 164
Y F +I +PR++G + K P L + + ++ + F ++ C
Sbjct: 148 YDMFFTDRRIIPLLPRVIGKKFFTSKKIPVALDLKHRNWKHQIEKACGSAMFFIRTGTCS 207
Query: 165 GVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLK 206
+ VG +SM+ +I +NV ++N LV L W VR L+LK
Sbjct: 208 VIKVGKLSMDICEITENVMATLNGLVEFLPNKWTYVRSLHLK 249