Miyakogusa Predicted Gene

Lj6g3v0497290.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0497290.1 Non Chatacterized Hit- tr|I3SL36|I3SL36_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.58,0,seg,NULL,CUFF.57915.1
         (255 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56010.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   147   8e-36

>AT3G56010.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast
           thylakoid membrane; EXPRESSED IN: 22 plant structures;
           EXPRESSED DURING: 13 growth stages; Has 25 Blast hits to
           25 proteins in 12 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr3:20788758-20789656 FORWARD LENGTH=201
          Length = 201

 Score =  147 bits (370), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 75/124 (60%), Positives = 92/124 (74%), Gaps = 6/124 (4%)

Query: 137 EGSETSSATKR----TARDRLRAARVLSRYKDSS-KETKPEMGKSVLDAFKESEKGKKRS 191
           E  E+S+ T +    TAR+RLRAARVLSRY +++ K +KP+MG  +LD  KES+K  KR 
Sbjct: 78  ESVESSNGTAKKAPLTARERLRAARVLSRYTEATPKPSKPKMGSQLLDVLKESDKKSKRK 137

Query: 192 R-LPEAPSNLLDDSKRGMPKQGLTFDLPGGSDLXXXXXXXXXXXTVMFATTYLVWKVGAI 250
             LPEAP+N+LDDS+RGMPK GLTFDLPGGSD+           TVMFATT+LVWK+GAI
Sbjct: 138 PGLPEAPTNMLDDSRRGMPKSGLTFDLPGGSDILIIAFSFVFISTVMFATTFLVWKLGAI 197

Query: 251 HFNE 254
           HFNE
Sbjct: 198 HFNE 201