Miyakogusa Predicted Gene

Lj6g3v0486190.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0486190.1 Non Chatacterized Hit- tr|I1N0B1|I1N0B1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.37946
PE,53.26,2e-16,seg,NULL,NODE_74811_length_677_cov_34.141804.path2.1
         (109 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13175.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    67   3e-12
AT4G16400.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    56   4e-09

>AT3G13175.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: endomembrane
          system; EXPRESSED IN: 18 plant structures; EXPRESSED
          DURING: 12 growth stages; BEST Arabidopsis thaliana
          protein match is: unknown protein (TAIR:AT4G16400.1);
          Has 29 Blast hits to 29 proteins in 8 species: Archae -
          0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29;
          Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
          | chr3:4235260-4235580 REVERSE LENGTH=106
          Length = 106

 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 1  MEIPEPLYKFRYHILATLLIGLGTFSLIRYAPSLLTILTFFWPLILSTALVLAVVIAFTF 60
          ME  E L KF+  I+   ++ L T +L+ Y+P  LT+L++FWPL LSTAL LA V  F  
Sbjct: 1  MEFREKLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFAR 60

Query: 61 TS----PSNPNDNDAAPIPKPAEELLQYVVADD 89
          TS     S     + A +   AE +L YVV   
Sbjct: 61 TSDLPVSSTIIPGEGAGLKVAAEGILDYVVGGQ 93


>AT4G16400.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr4:9260564-9262102 FORWARD LENGTH=218
          Length = 218

 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (63%)

Query: 1   MEIPEPLYKFRYHILATLLIGLGTFSLIRYAPSLLTILTFFWPLILSTALVLAVVIAF 58
           MEI   L ++R+H + T+++ +   SL+  AP +L IL +FWPL  STA  LA+ I F
Sbjct: 122 MEIQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITF 179