Miyakogusa Predicted Gene
- Lj6g3v0486190.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0486190.1 Non Chatacterized Hit- tr|I1N0B1|I1N0B1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.37946
PE,53.26,2e-16,seg,NULL,NODE_74811_length_677_cov_34.141804.path2.1
(109 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G13175.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 67 3e-12
AT4G16400.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 56 4e-09
>AT3G13175.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 18 plant structures; EXPRESSED
DURING: 12 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G16400.1);
Has 29 Blast hits to 29 proteins in 8 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr3:4235260-4235580 REVERSE LENGTH=106
Length = 106
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 1 MEIPEPLYKFRYHILATLLIGLGTFSLIRYAPSLLTILTFFWPLILSTALVLAVVIAFTF 60
ME E L KF+ I+ ++ L T +L+ Y+P LT+L++FWPL LSTAL LA V F
Sbjct: 1 MEFREKLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFAR 60
Query: 61 TS----PSNPNDNDAAPIPKPAEELLQYVVADD 89
TS S + A + AE +L YVV
Sbjct: 61 TSDLPVSSTIIPGEGAGLKVAAEGILDYVVGGQ 93
>AT4G16400.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G13175.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr4:9260564-9262102 FORWARD LENGTH=218
Length = 218
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 1 MEIPEPLYKFRYHILATLLIGLGTFSLIRYAPSLLTILTFFWPLILSTALVLAVVIAF 58
MEI L ++R+H + T+++ + SL+ AP +L IL +FWPL STA LA+ I F
Sbjct: 122 MEIQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITF 179