Miyakogusa Predicted Gene

Lj6g3v0484020.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0484020.1 tr|C1FHE8|C1FHE8_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_62058
,26.15,0.0000007,seg,NULL; coiled-coil,NULL,CUFF.57906.1
         (202 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G43822.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   183   5e-47

>AT5G43822.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:17620830-17621868 FORWARD
           LENGTH=195
          Length = 195

 Score =  183 bits (465), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 89/197 (45%), Positives = 135/197 (68%), Gaps = 3/197 (1%)

Query: 5   MEAMVKKFQSKFRKVREEMNQWNELQSCLISQFRNASYIVERLEVLQNSHNYGVLKCVSG 64
           MEA+++K+Q KFRK +EEM +W  LQ   +S FRNAS I++RL+ +QN  +YG L+C+ G
Sbjct: 1   MEAVIRKWQQKFRKGKEEMEKWEALQVRWVSLFRNASSIIQRLQEMQNHGSYGALRCLKG 60

Query: 65  VREALLAKQIESLVNILVSMKKTLEDFHCVVLSLEKIHREGRQLVKGGSSRPTIKQLQQR 124
           + +A++ +Q+  L ++L SMK  +E+F   VL+ EK+HR+G QL +  SS+   +++++R
Sbjct: 61  IEDAVVQQQMGQLESLLRSMKNVMEEFWGCVLTFEKLHRDGLQLREIESSK---RRVEER 117

Query: 125 VGIKPTLNDCLDGLLFLHEIHNSEYXXXXXXXXXXXXXXXXPSASDLGALQQLLVDQPNL 184
           +G+KP + DCL+GL  L+++H SEY                PS  DL ALQ L+VDQPN+
Sbjct: 118 IGVKPCITDCLEGLSILYDMHQSEYHLKSSILSVLSCLILKPSPGDLNALQYLVVDQPNI 177

Query: 185 LTEEVQFVFDVIFAEEL 201
             +EVQ +FDVIFAEE+
Sbjct: 178 PKDEVQHIFDVIFAEEI 194