Miyakogusa Predicted Gene

Lj6g3v0467280.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0467280.1 Non Chatacterized Hit- tr|B9S471|B9S471_RICCO
Putative uncharacterized protein OS=Ricinus communis G,53.57,4e-16,
,CUFF.58142.1
         (81 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G40316.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    82   5e-17
AT2G40316.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    54   2e-08

>AT2G40316.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant
           structures; EXPRESSED DURING: 13 growth stages; CONTAINS
           InterPro DOMAIN/s: Autophagy-related protein 27
           (InterPro:IPR018939); Has 138 Blast hits to 138 proteins
           in 57 species: Archae - 0; Bacteria - 0; Metazoa - 32;
           Fungi - 62; Plants - 33; Viruses - 0; Other Eukaryotes -
           11 (source: NCBI BLink). | chr2:16836355-16838688
           FORWARD LENGTH=276
          Length = 276

 Score = 82.4 bits (202), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 54/78 (69%)

Query: 3   CNALLANNIGGYHVCTAIGLGSKIDVEVIDKKNPHIGVIVKMSSSSPKYNCSLAVSVLCN 62
           C+AL++ N+ GY VCT++G  S   V++IDK++P  GVIV+MS+ +   NCSL+VSV+C 
Sbjct: 101 CSALVSENVRGYDVCTSLGHASSTKVDIIDKEDPGKGVIVQMSTGNRNQNCSLSVSVICQ 160

Query: 63  VNRVQAPHTLEKLGACNY 80
             +V  P TL K G C Y
Sbjct: 161 KTKVDGPLTLAKSGTCQY 178


>AT2G40316.2 | Symbols:  | FUNCTIONS IN: molecular_function
          unknown; EXPRESSED IN: 22 plant structures; EXPRESSED
          DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
          Autophagy-related protein 27 (InterPro:IPR018939); Has
          135 Blast hits to 135 proteins in 58 species: Archae -
          0; Bacteria - 0; Metazoa - 32; Fungi - 63; Plants - 31;
          Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
          | chr2:16836768-16838688 FORWARD LENGTH=195
          Length = 195

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 34/51 (66%)

Query: 30 VIDKKNPHIGVIVKMSSSSPKYNCSLAVSVLCNVNRVQAPHTLEKLGACNY 80
          V DK++P  GVIV+MS+ +   NCSL+VSV+C   +V  P TL K G C Y
Sbjct: 47 VRDKEDPGKGVIVQMSTGNRNQNCSLSVSVICQKTKVDGPLTLAKSGTCQY 97