Miyakogusa Predicted Gene
- Lj6g3v0451100.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0451100.2 Non Chatacterized Hit- tr|B6T1M8|B6T1M8_MAIZE
Putative uncharacterized protein OS=Zea mays PE=4 SV=1,56.96,7e-19,no
description,Tetratricopeptide-like helical; Sel1-like
repeats.,Sel1-like; UNKNOWN PROTEIN,NULL; S,CUFF.57868.2
(154 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G05360.1 | Symbols: | unknown protein; INVOLVED IN: biologic... 137 3e-33
AT2G38450.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Sel1-like ... 130 4e-31
AT5G05360.2 | Symbols: | unknown protein; INVOLVED IN: biologic... 124 3e-29
>AT5G05360.1 | Symbols: | unknown protein; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT2G38450.1); Has 84 Blast hits to 84
proteins in 24 species: Archae - 0; Bacteria - 8;
Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other
Eukaryotes - 3 (source: NCBI BLink). |
chr5:1588356-1589178 FORWARD LENGTH=163
Length = 163
Score = 137 bits (345), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 60/84 (71%), Positives = 73/84 (86%)
Query: 67 RTPLSKVVADCTKRWFQDTLKEARAGDSGMQVLVGQMYYSGYGVPRDPRKGHAWISKASR 126
R PL++VV DC +RWFQDTLKEA++GD GMQVLVGQMY SGYG+P+D KG AWI+KASR
Sbjct: 77 RVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCSGYGIPKDENKGRAWINKASR 136
Query: 127 SRNSVWKVSEKPPGYRASDSDSCE 150
+R+S W+VS+KPPGY ASDSDS +
Sbjct: 137 TRSSAWQVSDKPPGYNASDSDSND 160
>AT2G38450.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Sel1-like
(InterPro:IPR006597); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G05360.1); Has 88
Blast hits to 88 proteins in 25 species: Archae - 0;
Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 70;
Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
| chr2:16102016-16102683 FORWARD LENGTH=138
Length = 138
Score = 130 bits (327), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 59/81 (72%), Positives = 69/81 (85%)
Query: 68 TPLSKVVADCTKRWFQDTLKEARAGDSGMQVLVGQMYYSGYGVPRDPRKGHAWISKASRS 127
PLS VV+DC KRWF+DTL+EA+AG+ MQVL+GQMYYSGYGVP+D RKG WI+KASR
Sbjct: 55 VPLSSVVSDCAKRWFKDTLEEAKAGNITMQVLLGQMYYSGYGVPKDARKGRLWITKASRV 114
Query: 128 RNSVWKVSEKPPGYRASDSDS 148
R+SVWKV +K PGY ASDSDS
Sbjct: 115 RSSVWKVIDKRPGYNASDSDS 135
>AT5G05360.2 | Symbols: | unknown protein; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT2G38450.1); Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr5:1588356-1589044 FORWARD LENGTH=153
Length = 153
Score = 124 bits (310), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 65/74 (87%)
Query: 67 RTPLSKVVADCTKRWFQDTLKEARAGDSGMQVLVGQMYYSGYGVPRDPRKGHAWISKASR 126
R PL++VV DC +RWFQDTLKEA++GD GMQVLVGQMY SGYG+P+D KG AWI+KASR
Sbjct: 77 RVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCSGYGIPKDENKGRAWINKASR 136
Query: 127 SRNSVWKVSEKPPG 140
+R+S W+VS+KPPG
Sbjct: 137 TRSSAWQVSDKPPG 150