Miyakogusa Predicted Gene

Lj6g3v0437540.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0437540.1 tr|G7IP58|G7IP58_MEDTR F-box protein SKIP19
OS=Medicago truncatula GN=MTR_2g019060 PE=4
SV=1,43.51,3e-19,RNI-like,NULL; no description,NULL; N7-RELATED
PROTEIN,NULL; F-BOX/LEUCINE RICH REPEAT PROTEIN,NULL,CUFF.57878.1
         (136 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G05475.1 | Symbols:  | RNI-like superfamily protein | chr4:27...   103   4e-23
AT4G05470.1 | Symbols:  | RNI-like superfamily protein | chr4:27...   102   6e-23
AT4G05490.1 | Symbols:  | RNI-like superfamily protein | chr4:27...    97   5e-21
AT4G03630.1 | Symbols:  | RNI-like superfamily protein | chr4:16...    94   4e-20
AT4G05460.1 | Symbols:  | RNI-like superfamily protein | chr4:27...    87   4e-18
AT5G52480.2 | Symbols:  | RNI-like superfamily protein | chr5:21...    79   9e-16
AT5G52480.1 | Symbols:  | RNI-like superfamily protein | chr5:21...    79   9e-16
AT4G05497.1 | Symbols:  | RNI-like superfamily protein | chr4:27...    65   2e-11
AT4G08980.5 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-...    55   2e-08
AT4G08980.4 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-...    55   2e-08
AT4G08980.2 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-...    55   2e-08
AT4G08980.3 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-...    55   2e-08
AT4G08980.1 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-...    55   2e-08
AT5G57900.1 | Symbols: SKIP1 | SKP1 interacting partner 1 | chr5...    49   1e-06

>AT4G05475.1 | Symbols:  | RNI-like superfamily protein |
           chr4:2765962-2767957 REVERSE LENGTH=309
          Length = 309

 Score =  103 bits (256), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 49/76 (64%), Positives = 62/76 (81%), Gaps = 1/76 (1%)

Query: 7   FECDDEAFAIAKTMPQLCHLQLLGNRLTNEGLLAILDGCPHL-ESLDLRVCSNVDLSGSL 65
            ECDD+A AIA++MP+L HLQL+GN LTN GL AILDGCPHL E LD+R C N++L G+L
Sbjct: 210 LECDDDALAIAESMPKLRHLQLMGNGLTNTGLNAILDGCPHLEEHLDVRKCFNINLVGNL 269

Query: 66  RERCLKQIKDLRLPED 81
            +RC+K+IK+LR P D
Sbjct: 270 EKRCMKRIKELRRPHD 285


>AT4G05470.1 | Symbols:  | RNI-like superfamily protein |
           chr4:2763256-2765351 REVERSE LENGTH=304
          Length = 304

 Score =  102 bits (255), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 48/75 (64%), Positives = 59/75 (78%)

Query: 7   FECDDEAFAIAKTMPQLCHLQLLGNRLTNEGLLAILDGCPHLESLDLRVCSNVDLSGSLR 66
            ECDD+A AIA++MP+L HLQL+ NRLTN GL AILDGCPHLE LD+R C  + L G+L 
Sbjct: 220 LECDDDALAIAESMPKLHHLQLMANRLTNTGLNAILDGCPHLEHLDVRKCFRISLVGNLE 279

Query: 67  ERCLKQIKDLRLPED 81
           +RCL+ IK+LR P D
Sbjct: 280 KRCLEMIKELRRPGD 294


>AT4G05490.1 | Symbols:  | RNI-like superfamily protein |
           chr4:2771044-2772252 REVERSE LENGTH=307
          Length = 307

 Score = 96.7 bits (239), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 47/75 (62%), Positives = 56/75 (74%)

Query: 8   ECDDEAFAIAKTMPQLCHLQLLGNRLTNEGLLAILDGCPHLESLDLRVCSNVDLSGSLRE 67
           E D++A AIA TMP L HLQL+ N LTN GL AILDGCPHLE LDLR C N++L G L  
Sbjct: 190 ESDNDALAIADTMPGLLHLQLISNGLTNIGLNAILDGCPHLECLDLRQCFNINLFGDLER 249

Query: 68  RCLKQIKDLRLPEDL 82
           +CL++IKD R P D+
Sbjct: 250 QCLERIKDFRCPNDV 264


>AT4G03630.1 | Symbols:  | RNI-like superfamily protein |
           chr4:1608750-1610037 FORWARD LENGTH=220
          Length = 220

 Score = 93.6 bits (231), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 56/78 (71%)

Query: 4   LKGFECDDEAFAIAKTMPQLCHLQLLGNRLTNEGLLAILDGCPHLESLDLRVCSNVDLSG 63
             GF  D +A  IAK MP+L  LQL GNR+++ GL AI DGCPHLE LDLR C N++L G
Sbjct: 127 FPGFTYDHDALGIAKRMPELRCLQLFGNRVSDVGLNAIFDGCPHLEHLDLRQCFNINLVG 186

Query: 64  SLRERCLKQIKDLRLPED 81
            L +RC+++IKDLR P D
Sbjct: 187 DLEKRCMERIKDLRRPND 204


>AT4G05460.1 | Symbols:  | RNI-like superfamily protein |
           chr4:2761106-2762400 REVERSE LENGTH=302
          Length = 302

 Score = 86.7 bits (213), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/128 (45%), Positives = 79/128 (61%), Gaps = 17/128 (13%)

Query: 8   ECDDEAFAIAKTMPQLCHLQLLGNRLTNEGLLAILDGCPHLESLDLRVCSNVDLSGSLRE 67
           E DD+A AIA+TMP+L HLQL GN L++ GL AILD C +LE LDLR C NV+L G L++
Sbjct: 179 ENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVNLVGDLQK 238

Query: 68  RCLKQIKDLRLPED-LSEVSIYTEGGNEVESTDEDYQIYLRDYVDIDWANERESTDEDYQ 126
           RC + +K +R P D + ++ I +       S DED      D+ DID      S D+D++
Sbjct: 239 RCFESVKVVRHPNDSIHDIDIGS-------SEDEDPY----DFSDIDLM----SGDDDFE 283

Query: 127 IYLRDYVG 134
            Y  D+ G
Sbjct: 284 GYY-DFSG 290


>AT5G52480.2 | Symbols:  | RNI-like superfamily protein |
           chr5:21296918-21297529 REVERSE LENGTH=203
          Length = 203

 Score = 79.0 bits (193), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 57/100 (57%), Gaps = 18/100 (18%)

Query: 18  KTMPQLCHLQLLGNRLTNEGLLAILDGCPHLESLDLRVCSNVDLSGSLRERCLKQIKDLR 77
           ++MP+L HLQL GN+LT  GL AILDGCPHLE LDLR C  ++L G+L +RC ++IKDLR
Sbjct: 91  ESMPKLRHLQLCGNKLTKTGLNAILDGCPHLEHLDLRQC--INLVGNLEKRCFEKIKDLR 148

Query: 78  LPEDLSEVSIYTEGGNEVESTDEDYQIYLRDYVDIDWANE 117
              D               ST  DY      Y    W+ +
Sbjct: 149 RHND---------------STSADYPFSFETYY-FHWSRQ 172


>AT5G52480.1 | Symbols:  | RNI-like superfamily protein |
           chr5:21296918-21297762 REVERSE LENGTH=241
          Length = 241

 Score = 79.0 bits (193), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 57/100 (57%), Gaps = 18/100 (18%)

Query: 18  KTMPQLCHLQLLGNRLTNEGLLAILDGCPHLESLDLRVCSNVDLSGSLRERCLKQIKDLR 77
           ++MP+L HLQL GN+LT  GL AILDGCPHLE LDLR C  ++L G+L +RC ++IKDLR
Sbjct: 129 ESMPKLRHLQLCGNKLTKTGLNAILDGCPHLEHLDLRQC--INLVGNLEKRCFEKIKDLR 186

Query: 78  LPEDLSEVSIYTEGGNEVESTDEDYQIYLRDYVDIDWANE 117
              D               ST  DY      Y    W+ +
Sbjct: 187 RHND---------------STSADYPFSFETYY-FHWSRQ 210


>AT4G05497.1 | Symbols:  | RNI-like superfamily protein |
           chr4:2777903-2778801 REVERSE LENGTH=246
          Length = 246

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 40/57 (70%)

Query: 9   CDDEAFAIAKTMPQLCHLQLLGNRLTNEGLLAILDGCPHLESLDLRVCSNVDLSGSL 65
           CD  A AIA+TMP L HLQL  N L+  GL AIL+GCPHL++L L  C N+++ G +
Sbjct: 188 CDKVALAIAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLGLHQCLNINIVGDI 244


>AT4G08980.5 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
           chr4:5758993-5760108 FORWARD LENGTH=317
          Length = 317

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 41/67 (61%)

Query: 10  DDEAFAIAKTMPQLCHLQLLGNRLTNEGLLAILDGCPHLESLDLRVCSNVDLSGSLRERC 69
           DDEA+AIA TMP+L  L++  +R++ EG+L IL  C  LE L+LR C +V L     +  
Sbjct: 178 DDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKEK 237

Query: 70  LKQIKDL 76
              +K L
Sbjct: 238 FPDMKVL 244


>AT4G08980.4 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
           chr4:5758993-5760108 FORWARD LENGTH=317
          Length = 317

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 41/67 (61%)

Query: 10  DDEAFAIAKTMPQLCHLQLLGNRLTNEGLLAILDGCPHLESLDLRVCSNVDLSGSLRERC 69
           DDEA+AIA TMP+L  L++  +R++ EG+L IL  C  LE L+LR C +V L     +  
Sbjct: 178 DDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKEK 237

Query: 70  LKQIKDL 76
              +K L
Sbjct: 238 FPDMKVL 244


>AT4G08980.2 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
           chr4:5758993-5760108 FORWARD LENGTH=317
          Length = 317

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 41/67 (61%)

Query: 10  DDEAFAIAKTMPQLCHLQLLGNRLTNEGLLAILDGCPHLESLDLRVCSNVDLSGSLRERC 69
           DDEA+AIA TMP+L  L++  +R++ EG+L IL  C  LE L+LR C +V L     +  
Sbjct: 178 DDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKEK 237

Query: 70  LKQIKDL 76
              +K L
Sbjct: 238 FPDMKVL 244


>AT4G08980.3 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
           chr4:5758993-5760108 FORWARD LENGTH=317
          Length = 317

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 41/67 (61%)

Query: 10  DDEAFAIAKTMPQLCHLQLLGNRLTNEGLLAILDGCPHLESLDLRVCSNVDLSGSLRERC 69
           DDEA+AIA TMP+L  L++  +R++ EG+L IL  C  LE L+LR C +V L     +  
Sbjct: 178 DDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKEK 237

Query: 70  LKQIKDL 76
              +K L
Sbjct: 238 FPDMKVL 244


>AT4G08980.1 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
           chr4:5758993-5760108 FORWARD LENGTH=317
          Length = 317

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 41/67 (61%)

Query: 10  DDEAFAIAKTMPQLCHLQLLGNRLTNEGLLAILDGCPHLESLDLRVCSNVDLSGSLRERC 69
           DDEA+AIA TMP+L  L++  +R++ EG+L IL  C  LE L+LR C +V L     +  
Sbjct: 178 DDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKEK 237

Query: 70  LKQIKDL 76
              +K L
Sbjct: 238 FPDMKVL 244


>AT5G57900.1 | Symbols: SKIP1 | SKP1 interacting partner 1 |
           chr5:23449916-23450915 REVERSE LENGTH=300
          Length = 300

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 11/93 (11%)

Query: 10  DDEAFAIAKTMPQLCHLQLLGNRLTNEGLLAILDGCPHLESLDLRVC---SNVDLSGSLR 66
           D EA AI K M  L HL++  +RL+ +GL +I +GCP LE LDL  C   S+ D++ ++ 
Sbjct: 197 DTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDLFGCVHLSSRDITSNVS 256

Query: 67  ERCLKQIKDLRLPEDLSEVSIYTEGGNEVESTD 99
              LK +K+++ P+      +Y     +V  T+
Sbjct: 257 R--LKWLKEVKKPD------VYVPRSGDVAQTE 281