Miyakogusa Predicted Gene

Lj6g3v0435070.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0435070.1 tr|Q5YJP8|Q5YJP8_HYAOR Pentatricopeptide repeat
protein-like protein (Fragment) OS=Hyacinthus
orient,40.2,5e-16,PPR_2,Pentatricopeptide repeat; seg,NULL; FAMILY NOT
NAMED,NULL; PPR: pentatricopeptide repeat domai,CUFF.57841.1
         (189 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G62470.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    63   1e-10
AT1G02420.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    62   2e-10
AT5G14820.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    62   3e-10
AT3G62540.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    62   3e-10
AT5G02860.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    59   2e-09
AT1G62590.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    58   5e-09
AT4G26680.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    57   8e-09
AT4G26680.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    57   8e-09
AT1G64580.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    56   1e-08
AT1G53330.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    56   2e-08
AT5G38730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    55   2e-08
AT1G77360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    55   2e-08
AT2G02150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    55   3e-08
AT1G63330.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    54   4e-08
AT1G20300.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    54   5e-08
AT2G37230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    54   5e-08
AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 | chr1:232...    54   6e-08
AT1G52640.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    54   7e-08
AT1G71060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    54   8e-08
AT1G73400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    53   1e-07
AT1G62720.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    53   1e-07
AT5G16420.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    52   2e-07
AT1G74750.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    52   3e-07
AT1G62930.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    52   3e-07
AT1G63150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    51   5e-07
AT1G09900.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    51   6e-07
AT5G39980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    50   8e-07
AT1G63230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    50   8e-07
AT3G22470.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    50   9e-07
AT1G63080.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    50   1e-06
AT4G31850.1 | Symbols: PGR3 | proton gradient regulation 3 | chr...    50   1e-06
AT3G09060.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    49   1e-06
AT3G06920.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    49   2e-06
AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-...    49   2e-06
AT1G12775.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    49   2e-06
AT3G61360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    49   2e-06
AT5G64320.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    49   2e-06
AT1G63400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    49   2e-06
AT5G61990.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    49   3e-06
AT4G11690.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    48   3e-06
AT3G59040.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    48   4e-06
AT1G12700.1 | Symbols:  | ATP binding;nucleic acid binding;helic...    48   4e-06
AT5G59900.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    48   4e-06
AT2G16880.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    48   5e-06
AT3G59040.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    48   5e-06
AT1G62910.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    47   6e-06
AT2G17140.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    47   6e-06
AT1G18900.3 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    47   8e-06
AT1G63130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    47   9e-06
AT1G18900.2 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    47   1e-05
AT1G18900.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    47   1e-05

>AT3G62470.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:23106600-23108399 REVERSE
           LENGTH=599
          Length = 599

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 82/174 (47%)

Query: 14  TTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRD 73
           + LQP  ++Y  ++  +     L+T  +++ +M  +G  PD  TYN + + +   +    
Sbjct: 397 SGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEH 456

Query: 74  ASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWKCEVEHYRRDLEDTANXXXX 133
           A+R++++M++NE  P     +  ++ Y   R+  M   VW+  ++      +++      
Sbjct: 457 ATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIR 516

Query: 134 XXXXXXXXPEAVKYAEDMIGRGIKLTSSTLSKLKHRLVKGRKEFLYEELLRKWK 187
                    EA +Y E+M+ +G+K      +K      +G +  ++EEL ++ K
Sbjct: 517 GLIGEGKSREACRYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQRAK 570


>AT1G02420.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:493683-495158 FORWARD
           LENGTH=491
          Length = 491

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 54/97 (55%)

Query: 18  PTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDASRV 77
           P  + YN+ +  +     L  A K++D+MV +G  P++ TYNL FR L     L  +  +
Sbjct: 314 PDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLANDLGRSWEL 373

Query: 78  FSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWK 114
           +  M+ NEC+P+  +C   I+++  +    MAM++W+
Sbjct: 374 YVRMLGNECLPNTQSCMFLIKMFKRHEKVDMAMRLWE 410


>AT5G14820.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:4792072-4793868 REVERSE
           LENGTH=598
          Length = 598

 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/174 (20%), Positives = 80/174 (45%)

Query: 14  TTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRD 73
           + LQP  ++Y  ++  +     L+T  +++ +M  +G  PD  TYN + + +   +    
Sbjct: 396 SGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEH 455

Query: 74  ASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWKCEVEHYRRDLEDTANXXXX 133
            +R++++M++NE  P     +  ++ Y   R+  M   VW   ++      +++      
Sbjct: 456 GTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIR 515

Query: 134 XXXXXXXXPEAVKYAEDMIGRGIKLTSSTLSKLKHRLVKGRKEFLYEELLRKWK 187
                    EA +Y E+M+ +G+K      +K      +G +  ++EEL ++ K
Sbjct: 516 GLISEGKSREACRYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQRAK 569


>AT3G62540.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:23133514-23135313 REVERSE
           LENGTH=599
          Length = 599

 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/174 (20%), Positives = 80/174 (45%)

Query: 14  TTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRD 73
           + LQP  ++Y  ++  +     L+T  +++ +M  +G  PD  TYN + + +   +    
Sbjct: 397 SGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEH 456

Query: 74  ASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWKCEVEHYRRDLEDTANXXXX 133
            +R++++M++NE  P     +  ++ Y   R+  M   VW   ++      +++      
Sbjct: 457 GTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIR 516

Query: 134 XXXXXXXXPEAVKYAEDMIGRGIKLTSSTLSKLKHRLVKGRKEFLYEELLRKWK 187
                    EA +Y E+M+ +G+K      +K      +G +  ++EEL ++ K
Sbjct: 517 GLISEGKSREACRYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQRAK 570


>AT5G02860.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:654102-656561 FORWARD
           LENGTH=819
          Length = 819

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 12/169 (7%)

Query: 18  PTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDASRV 77
           P+ + YNS++ ++    D   + +++ +++ +G  PD ++YN +     +  ++RDASR+
Sbjct: 662 PSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRI 721

Query: 78  FSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWKCEVEHYRRDLEDTANXXXXXXXX 137
           FSEM  +  VPD    +  I  Y  +     A+ V +  ++H  R  ++T N        
Sbjct: 722 FSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCK 781

Query: 138 XXXXPEAVKYAEDMIGRGIKLTSSTLSKLKHRLVKGRKEFLYEELLRKW 186
                EA  + ED            L  L     KG    L E +++KW
Sbjct: 782 LNRKDEAKLFVED------------LRNLDPHAPKGEDLRLLERIVKKW 818



 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 16  LQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDAS 75
             P+   YNS+++ Y     L+ A ++ + M  +G  PD  TY  +     +  K+  A 
Sbjct: 345 FSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAM 404

Query: 76  RVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAM 110
            +F EM    C P+    +A I++Y  NR  F  M
Sbjct: 405 SIFEEMRNAGCKPNICTFNAFIKMY-GNRGKFTEM 438


>AT1G62590.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:23177294-23179198 REVERSE LENGTH=634
          Length = 634

 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 2/113 (1%)

Query: 2   AEFFWEVMLGRKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLM 61
           AE  ++ M+ R  ++ P    YNS++  +  H+ L+ A++M + MV +  FPD +TYN +
Sbjct: 349 AEKLYDDMIKR--SIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 406

Query: 62  FRFLIKGRKLRDASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWK 114
            +   K +++ D + +F EM     V D       I+    + D   A KV+K
Sbjct: 407 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFK 459


>AT4G26680.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:13454853-13456418 FORWARD
           LENGTH=521
          Length = 521

 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 76/177 (42%)

Query: 12  RKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKL 71
           +   + P T  YN+++  Y    D E A +  +DMV  G   D LTYN +   L K  K 
Sbjct: 335 KAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKT 394

Query: 72  RDASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWKCEVEHYRRDLEDTANXX 131
           R A++   E+ K   VP+     A I      ++A    +++K  +       E T N  
Sbjct: 395 RKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNML 454

Query: 132 XXXXXXXXXXPEAVKYAEDMIGRGIKLTSSTLSKLKHRLVKGRKEFLYEELLRKWKS 188
                       A +   +M+ R I L S T+ ++ + L    K+ L ++LL++ + 
Sbjct: 455 VSAFCRNEDFDGASQVLREMVRRSIPLDSRTVHQVCNGLKHQGKDQLVKKLLQEMEG 511


>AT4G26680.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:13454853-13456418 FORWARD
           LENGTH=521
          Length = 521

 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 76/177 (42%)

Query: 12  RKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKL 71
           +   + P T  YN+++  Y    D E A +  +DMV  G   D LTYN +   L K  K 
Sbjct: 335 KAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKT 394

Query: 72  RDASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWKCEVEHYRRDLEDTANXX 131
           R A++   E+ K   VP+     A I      ++A    +++K  +       E T N  
Sbjct: 395 RKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNML 454

Query: 132 XXXXXXXXXXPEAVKYAEDMIGRGIKLTSSTLSKLKHRLVKGRKEFLYEELLRKWKS 188
                       A +   +M+ R I L S T+ ++ + L    K+ L ++LL++ + 
Sbjct: 455 VSAFCRNEDFDGASQVLREMVRRSIPLDSRTVHQVCNGLKHQGKDQLVKKLLQEMEG 511


>AT1G64580.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23985078-23986649 REVERSE
           LENGTH=523
          Length = 523

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 47/100 (47%)

Query: 15  TLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDA 74
           ++ P    YNS++  +  H  L  A+ M D MV +G FPD +TYN +     K +++ D 
Sbjct: 284 SVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDG 343

Query: 75  SRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWK 114
            ++F EM     V D    +  I  Y       +A KV+ 
Sbjct: 344 MKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFN 383


>AT1G53330.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:19896027-19897442 FORWARD
           LENGTH=471
          Length = 471

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 44/73 (60%)

Query: 17  QPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDASR 76
           +P T  YN ++  +   ND E+A +++D+MV +G  PD ++YN++     + +K  +A+ 
Sbjct: 290 KPDTVTYNVLINGFCVENDSESANRVLDEMVEKGLKPDVISYNMILGVFFRIKKWEEATY 349

Query: 77  VFSEMVKNECVPD 89
           +F +M +  C PD
Sbjct: 350 LFEDMPRRGCSPD 362



 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 38/67 (56%)

Query: 16  LQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDAS 75
           L+P    YN +L ++F     E A  + +DM  RG  PD+L+Y ++F  L +G +  +A+
Sbjct: 324 LKPDVISYNMILGVFFRIKKWEEATYLFEDMPRRGCSPDTLSYRIVFDGLCEGLQFEEAA 383

Query: 76  RVFSEMV 82
            +  EM+
Sbjct: 384 VILDEML 390


>AT5G38730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:15510901-15512691 FORWARD
           LENGTH=596
          Length = 596

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 51/96 (53%)

Query: 23  YNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDASRVFSEMV 82
           Y +++  Y   ND++ A ++ + M  RG  P  +TYN + R L +  ++R+A+R+ +EM 
Sbjct: 310 YTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMS 369

Query: 83  KNECVPDQPNCDAAIRIYLDNRDAFMAMKVWKCEVE 118
             +  PD   C+  I  Y    D   A+KV K  +E
Sbjct: 370 GKKIEPDNITCNTLINAYCKIEDMVSAVKVKKKMIE 405


>AT1G77360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:29071983-29073536 REVERSE
           LENGTH=517
          Length = 517

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 84/174 (48%), Gaps = 5/174 (2%)

Query: 13  KTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLR 72
           ++ ++   +++NS++  +   N ++   +++ +M  +G  P+S + N++ R LI+  +  
Sbjct: 335 RSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKD 394

Query: 73  DASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWKCEVEHYRRDLEDTANXXX 132
           +A  VF +M+K  C PD       I+++ + ++   A KVWK   +        T +   
Sbjct: 395 EAFDVFRKMIK-VCEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLI 453

Query: 133 XXXXXXXXXPEAVKYAEDMIGRGIKLTSSTLSKLKHRLVKGRKE----FLYEEL 182
                     +A    E+MI  GI+ +  T  +L+  L+K  +E    FL E++
Sbjct: 454 NGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQLLIKEEREDVLKFLNEKM 507


>AT2G02150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:550340-552625 REVERSE
           LENGTH=761
          Length = 761

 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 5   FWEVMLGRKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRF 64
           F++ M+G     +PT   YN M+       D+E AR + ++M +RG  PD++TYN M   
Sbjct: 249 FFKDMIGAGA--RPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDG 306

Query: 65  LIKGRKLRDASRVFSEMVKNECVPDQPNCDAAIRIY 100
             K  +L D    F EM    C PD    +A I  +
Sbjct: 307 FGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCF 342


>AT1G63330.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23489840-23491519 FORWARD
           LENGTH=559
          Length = 559

 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 51/102 (50%)

Query: 13  KTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLR 72
           K ++ P    YNS++  +  H+ L+ A++M + MV +  FPD  TYN + +   K +++ 
Sbjct: 283 KRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVE 342

Query: 73  DASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWK 114
           D + +F EM     V D       I+    + D   A KV+K
Sbjct: 343 DGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFK 384


>AT1G20300.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:7029701-7031314 FORWARD
           LENGTH=537
          Length = 537

 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 60/103 (58%)

Query: 12  RKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKL 71
           +K   +P T  YN ++  +    +LE A K+++ M+ +    ++ T+N +FR++ K R +
Sbjct: 352 KKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDV 411

Query: 72  RDASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWK 114
             A R++S+M++ +C P+    +  +R+++ ++   M +K+ K
Sbjct: 412 NGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKK 454


>AT2G37230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:15637177-15639450 REVERSE
           LENGTH=757
          Length = 757

 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 2/101 (1%)

Query: 1   MAEFFWEVMLGRKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNL 60
           MA+ ++  M+     ++PT   YN ML  +F    LETA +  +DM  RG  PD  T+N 
Sbjct: 238 MAKRYFNKMVSE--GVEPTRHTYNLMLWGFFLSLRLETALRFFEDMKTRGISPDDATFNT 295

Query: 61  MFRFLIKGRKLRDASRVFSEMVKNECVPDQPNCDAAIRIYL 101
           M     + +K+ +A ++F EM  N+  P   +    I+ YL
Sbjct: 296 MINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIKGYL 336


>AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 |
           chr1:23204773-23206665 REVERSE LENGTH=630
          Length = 630

 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 60/113 (53%), Gaps = 2/113 (1%)

Query: 2   AEFFWEVMLGRKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLM 61
           AE  ++ M+ R  ++ P+   Y+S++  +  H+ L+ A++M + MV +  FPD +TYN +
Sbjct: 345 AEKLYDEMVKR--SIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 402

Query: 62  FRFLIKGRKLRDASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWK 114
            +   K +++ +   VF EM +   V +    +  I+      D  MA +++K
Sbjct: 403 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFK 455


>AT1G52640.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:19608857-19610428 REVERSE
           LENGTH=523
          Length = 523

 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 76/161 (47%), Gaps = 1/161 (0%)

Query: 12  RKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKL 71
           ++  L P    +N ++     +  ++ A  ++D+M+ +GA PD+ TYN +  +     ++
Sbjct: 305 KRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEV 364

Query: 72  RDASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWKCEVEH-YRRDLEDTANX 130
             A+++ S M + +C+PD+   +  +++ +       A ++W+   E  +   +      
Sbjct: 365 NRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVM 424

Query: 131 XXXXXXXXXXXPEAVKYAEDMIGRGIKLTSSTLSKLKHRLV 171
                       EA +Y E MI  GI   S+T+  L++RLV
Sbjct: 425 IHGLVRKKGKLEEACRYFEMMIDEGIPPYSTTVEMLRNRLV 465


>AT1G71060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:26805651-26807183 REVERSE
           LENGTH=510
          Length = 510

 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 4/155 (2%)

Query: 23  YNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDASRVFSEMV 82
           YN+++  Y +   +E A K +D+M  +G  P++ TY+++   LI+ ++ ++A  V+  M 
Sbjct: 340 YNALVGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTM- 398

Query: 83  KNECVPDQPNCDAAIRIYLDNRDAFMAMKVWKCEVEHYRRDLEDTANXXXXXXXXXXXXP 142
              C P     +  +R++ +     MA+K+W               +             
Sbjct: 399 --SCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLD 456

Query: 143 EAVKYAEDMIGRGIKLTSSTLSKLKHRLV-KGRKE 176
           EA +Y  +M+  GI+      S+LK  L+ +GRK+
Sbjct: 457 EACEYFNEMLDVGIRPPGHMFSRLKQTLLDEGRKD 491


>AT1G73400.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:27598106-27599812 FORWARD
           LENGTH=568
          Length = 568

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 8/155 (5%)

Query: 9   MLGR--KTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLI 66
           ++GR   T   P  S Y  ++        ++ A K +D+M  +G  PD +TYN   R L 
Sbjct: 363 LIGRMISTGCLPDVSTYKDVIEGMCMAEKVDEAYKFLDEMSNKGYPPDIVTYNCFLRVLC 422

Query: 67  KGRKLRDASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWKCEVEHYRRDL-- 124
           + RK  +A +++  MV++ C P     +  I ++ +  D   A   W    E  +RD   
Sbjct: 423 ENRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDGAFNTW---TEMDKRDCVQ 479

Query: 125 -EDTANXXXXXXXXXXXXPEAVKYAEDMIGRGIKL 158
             +T               EA    E+++ +G+KL
Sbjct: 480 DVETYCAMINGLFDCHRAKEACFLLEEVVNKGLKL 514


>AT1G62720.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:23227574-23229031 FORWARD
           LENGTH=485
          Length = 485

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 45/86 (52%)

Query: 16  LQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDAS 75
           + P    YNS++     H  ++ A++M+D MV +G  PD +TYN +     K +++ + +
Sbjct: 275 VDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGT 334

Query: 76  RVFSEMVKNECVPDQPNCDAAIRIYL 101
           ++F EM +   V D    +  I+ Y 
Sbjct: 335 KLFREMAQRGLVGDTITYNTIIQGYF 360


>AT5G16420.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr5:5368034-5369641 FORWARD
           LENGTH=535
          Length = 535

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 46/83 (55%)

Query: 16  LQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDAS 75
           L P    Y ++L  Y    D+E+A++++++M+ RG +PD+ TY ++     K  +  +A+
Sbjct: 222 LVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAA 281

Query: 76  RVFSEMVKNECVPDQPNCDAAIR 98
            V  +M KNE  P++      IR
Sbjct: 282 TVMDDMEKNEIEPNEVTYGVMIR 304


>AT1G74750.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:28086800-28089367 FORWARD
           LENGTH=855
          Length = 855

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 9   MLGRKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKG 68
           M+G+  T  P    +N M+AL+    + ETA K+  DM   G  PD +TY+++   L   
Sbjct: 490 MVGQGCT--PNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHC 547

Query: 69  RKLRDASRVFSEMVKNECVPDQP 91
             L +A  VF+EM +   VPD+P
Sbjct: 548 GFLEEAEGVFAEMQRKNWVPDEP 570


>AT1G62930.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23306534-23308423 FORWARD
           LENGTH=629
          Length = 629

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 58/113 (51%), Gaps = 2/113 (1%)

Query: 2   AEFFWEVMLGRKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLM 61
           AE  ++ M+ R  ++ P    Y+S++  +  H+ L+ A+ M + M+ +  FP+ +TYN +
Sbjct: 344 AEKLYDEMIKR--SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 401

Query: 62  FRFLIKGRKLRDASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWK 114
            +   K +++ +   +F EM +   V +    +  I+      D  MA K++K
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFK 454


>AT1G63150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23419399-23421288 FORWARD
           LENGTH=629
          Length = 629

 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 41/74 (55%)

Query: 16  LQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDAS 75
           + P    +N+++  +F    L  A K+ ++M+ R   PD++TYNL+        +L +A 
Sbjct: 324 INPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAK 383

Query: 76  RVFSEMVKNECVPD 89
           ++F  MV  +C+P+
Sbjct: 384 QMFKFMVSKDCLPN 397



 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 2/113 (1%)

Query: 2   AEFFWEVMLGRKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLM 61
           AE   E M+ R  ++ P T  YN ++  +  HN L+ A++M   MV +   P+  TYN +
Sbjct: 347 AEKLHEEMIQR--SIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTL 404

Query: 62  FRFLIKGRKLRDASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWK 114
                K +++ D   +F EM +   V +       I+ +    D   A  V+K
Sbjct: 405 INGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFK 457


>AT1G09900.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:3218133-3219929 FORWARD
           LENGTH=598
          Length = 598

 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%)

Query: 17  QPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDASR 76
           QP +  YN +L  +     ++ A + ++ MV RG +PD +TYN M   L K  K+ DA  
Sbjct: 376 QPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVE 435

Query: 77  VFSEMVKNECVP 88
           + +++    C P
Sbjct: 436 ILNQLSSKGCSP 447


>AT5G39980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:16001036-16003072 REVERSE
           LENGTH=678
          Length = 678

 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 45/89 (50%)

Query: 12  RKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKL 71
           +++ + P    YNSM+ +Y        AR ++ +M   G  P++++Y+ +    ++  K 
Sbjct: 252 KRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKF 311

Query: 72  RDASRVFSEMVKNECVPDQPNCDAAIRIY 100
            +A  VF+EM +  C  D   C+  I +Y
Sbjct: 312 LEALSVFAEMKEVNCALDLTTCNIMIDVY 340


>AT1G63230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23451144-23452201 FORWARD
           LENGTH=323
          Length = 323

 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 5/123 (4%)

Query: 2   AEFFWEVMLGRKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLM 61
           AE     M+ R+  + P    +++++        +  A ++  DM+ RG FP ++TYN M
Sbjct: 130 AEQLLRDMIERQ--INPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSM 187

Query: 62  FRFLIKGRKLRDASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWKCEVEHYR 121
                K  +L DA R+   M    C PD       I  Y   +     M+++ CE+  +R
Sbjct: 188 IDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIF-CEM--HR 244

Query: 122 RDL 124
           R +
Sbjct: 245 RGI 247


>AT3G22470.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:7966066-7967925 REVERSE
           LENGTH=619
          Length = 619

 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 40/74 (54%)

Query: 16  LQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDAS 75
           + P T  YNS++  +   N L  A +M D MV +G  PD +TY+++     K +++ D  
Sbjct: 346 IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGM 405

Query: 76  RVFSEMVKNECVPD 89
           R+F E+     +P+
Sbjct: 406 RLFREISSKGLIPN 419



 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 9   MLGRKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKG 68
           M+GR   + P    +++++ ++     L  A+++ ++M+ RG  PD++TYN +     K 
Sbjct: 306 MIGRN--IIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKE 363

Query: 69  RKLRDASRVFSEMVKNECVPD 89
             L +A+++F  MV   C PD
Sbjct: 364 NCLHEANQMFDLMVSKGCEPD 384


>AT1G63080.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23388884-23390728 REVERSE
           LENGTH=614
          Length = 614

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 9   MLGRKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKG 68
           ML RK  + P    +NS++  +     L  A K+ D+M+ R   P+ +TYN +       
Sbjct: 301 MLERK--INPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMH 358

Query: 69  RKLRDASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWK 114
            +L +A ++F+ MV  +C+PD    +  I  +   +     M++++
Sbjct: 359 DRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFR 404



 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 2   AEFFWEVMLGRKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLM 61
           AE  ++ M+ R  ++ P    YNS++  +  H+ L+ A+++   MV +   PD +TYN +
Sbjct: 329 AEKLFDEMIQR--SIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTL 386

Query: 62  FRFLIKGRKLRDASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWK 114
                K +K+ D   +F +M +   V +       I  +    D   A  V+K
Sbjct: 387 INGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFK 439


>AT4G31850.1 | Symbols: PGR3 | proton gradient regulation 3 |
           chr4:15403020-15406358 FORWARD LENGTH=1112
          Length = 1112

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 46/78 (58%)

Query: 12  RKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKL 71
           ++  L+PT   YN++LA    +  ++ A ++ + MV +G  P+++T+N +F  L K  ++
Sbjct: 565 KEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEV 624

Query: 72  RDASRVFSEMVKNECVPD 89
             A ++  +M+   CVPD
Sbjct: 625 TLALKMLFKMMDMGCVPD 642


>AT3G09060.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:2766367-2768430 REVERSE
           LENGTH=687
          Length = 687

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 16  LQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDAS 75
           + P    YN ++ +     + E AR  +D M   G  PD  +Y+ +   L K  KL DA 
Sbjct: 145 VAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDAL 204

Query: 76  RVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWKCEVEHYRRDLEDTA 128
            +F EM +    PD    +  I  +L  +D   AM++W        R LED++
Sbjct: 205 ELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWD-------RLLEDSS 250


>AT3G06920.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:2181717-2184449 FORWARD
           LENGTH=871
          Length = 871

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 38/73 (52%)

Query: 18  PTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDASRV 77
           P  S YN ++ +      L+TA ++ D M   G FP+  T N+M   L K +KL +A  +
Sbjct: 375 PNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAM 434

Query: 78  FSEMVKNECVPDQ 90
           F EM    C PD+
Sbjct: 435 FEEMDYKVCTPDE 447


>AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr5:15895729-15897972
           FORWARD LENGTH=747
          Length = 747

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 5   FWEVMLGRKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRF 64
            +E ML  +  L P    Y +++  Y    DLE A ++ ++MV +G  PD +TY+++   
Sbjct: 507 LYEEML--RVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLING 564

Query: 65  LIKGRKLRDASRVFSEMVKNECVP 88
           L K  + R+A R+  ++   E VP
Sbjct: 565 LNKQSRTREAKRLLLKLFYEESVP 588


>AT1G12775.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:4353906-4355840 FORWARD
           LENGTH=644
          Length = 644

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 37/66 (56%)

Query: 16  LQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDAS 75
           + P T  YNS++  +   N LE A +M+D M+ +G  PD +T+N++     K  ++ D  
Sbjct: 364 IAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGL 423

Query: 76  RVFSEM 81
            +F EM
Sbjct: 424 ELFREM 429


>AT3G61360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:22704630-22706126 REVERSE
           LENGTH=498
          Length = 498

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 2/104 (1%)

Query: 13  KTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRK-- 70
           K  L P    YN++++      D+  A K+M +M  +G  PDS+T++ MF  ++K ++  
Sbjct: 308 KRGLTPDCGAYNALMSSLMKCGDVSGAIKVMKEMEEKGIEPDSVTFHSMFIGMMKSKEFG 367

Query: 71  LRDASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWK 114
                  + +M +   VP  P     ++++  N +  + + +WK
Sbjct: 368 FNGVCEYYQKMKERSLVPKTPTIVMLMKLFCHNGEVNLGLDLWK 411


>AT5G64320.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:25723247-25725439 REVERSE
           LENGTH=730
          Length = 730

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 47/78 (60%)

Query: 20  TSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDASRVFS 79
           T  YN+++  +    +++ ARK++++MV++G+  D +TYN + + L +  ++  A  +F 
Sbjct: 529 TVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFE 588

Query: 80  EMVKNECVPDQPNCDAAI 97
           +M+++   P   +C+  I
Sbjct: 589 KMLRDGHAPSNISCNILI 606


>AT1G63400.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23507320-23509053 FORWARD
           LENGTH=577
          Length = 577

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 2/113 (1%)

Query: 2   AEFFWEVMLGRKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLM 61
           AE  ++ M+ R  ++ P    Y+S++  +  H+ L+ A+ M + M+ +  FP+ +TYN +
Sbjct: 349 AEKLYDEMIKR--SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 406

Query: 62  FRFLIKGRKLRDASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWK 114
                K +++ +   +F EM +   V +       I  +   RD   A  V+K
Sbjct: 407 INGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFK 459


>AT5G61990.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:24900186-24903110 REVERSE
           LENGTH=974
          Length = 974

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 40/75 (53%)

Query: 16  LQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDAS 75
           L P   +YN +L  +    ++E A++++D+M  +G  P+++TY  +     K   L +A 
Sbjct: 658 LTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAF 717

Query: 76  RVFSEMVKNECVPDQ 90
           R+F EM     VPD 
Sbjct: 718 RLFDEMKLKGLVPDS 732


>AT4G11690.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr4:7056254-7057954 FORWARD
           LENGTH=566
          Length = 566

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 18/158 (11%)

Query: 16  LQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFR-FLIKGRKLRDA 74
           ++P+   Y  ++  +   +++E A ++   M   G  PD  TY+++   F IKG+ + +A
Sbjct: 404 IKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQ-MNEA 462

Query: 75  SRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWK--------CEVEHYRRDLED 126
           SR+F  MV+  C P++   +  I  Y     ++ A+K+ K          V  YR  +E 
Sbjct: 463 SRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIE- 521

Query: 127 TANXXXXXXXXXXXXPEAVKYAEDMIGRGIKLTSSTLS 164
                           EA +  E MI  GI  ++S LS
Sbjct: 522 -------VLCKERKSKEAERLVEKMIDSGIDPSTSILS 552


>AT3G59040.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:21821495-21824233 REVERSE
           LENGTH=583
          Length = 583

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 4/114 (3%)

Query: 2   AEFFWEVMLG-RKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNL 60
           AE  +E +L  +K+ L+P   MY+ M+ +Y    + E ARK+   MV +G    ++TYN 
Sbjct: 228 AEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNS 287

Query: 61  MFRFLIKGRKLRDASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWK 114
           +  F       ++ S+++ +M +++  PD  +    I+ Y   R    A+ V++
Sbjct: 288 LMSFET---SYKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFE 338


>AT1G12700.1 | Symbols:  | ATP binding;nucleic acid
           binding;helicases | chr1:4323722-4326227 REVERSE
           LENGTH=735
          Length = 735

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 49/99 (49%)

Query: 16  LQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDAS 75
           + P    +N +L ++     L+ A ++  +M+ RG  P+ +TYN +        +L +A+
Sbjct: 294 IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEAN 353

Query: 76  RVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWK 114
            +   MV+N+C PD     + I+ Y   +     MKV++
Sbjct: 354 NMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFR 392


>AT5G59900.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:24123983-24126706 REVERSE
           LENGTH=907
          Length = 907

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 2/113 (1%)

Query: 2   AEFFWEVMLGRKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLM 61
           AE F   M+ +K  L+PT   Y S++  Y     +  A ++  +M  +G  P   T+  +
Sbjct: 456 AEGFMAEMINKK--LEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTL 513

Query: 62  FRFLIKGRKLRDASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWK 114
              L +   +RDA ++F+EM +    P++   +  I  Y +  D   A +  K
Sbjct: 514 LSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLK 566


>AT2G16880.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:7312262-7314493 REVERSE
           LENGTH=743
          Length = 743

 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 2/89 (2%)

Query: 6   WEVMLGRKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFL 65
           W+ M  +K  + PT S +NS++    +H   E A +  D++   G  PD  T+N +    
Sbjct: 509 WDEM--KKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGY 566

Query: 66  IKGRKLRDASRVFSEMVKNECVPDQPNCD 94
            K  ++  A   ++E +K+   PD   C+
Sbjct: 567 CKEGRVEKAFEFYNESIKHSFKPDNYTCN 595


>AT3G59040.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:21821495-21823919 REVERSE
           LENGTH=590
          Length = 590

 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 4/114 (3%)

Query: 2   AEFFWEVMLG-RKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNL 60
           AE  +E +L  +K+ L+P   MY+ M+ +Y    + E ARK+   MV +G    ++TYN 
Sbjct: 235 AEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNS 294

Query: 61  MFRFLIKGRKLRDASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWK 114
           +  F       ++ S+++ +M +++  PD  +    I+ Y   R    A+ V++
Sbjct: 295 LMSFET---SYKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFE 345


>AT1G62910.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23299060-23300958 FORWARD
           LENGTH=632
          Length = 632

 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 2/113 (1%)

Query: 2   AEFFWEVMLGRKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLM 61
           AE  ++ M+ R  ++ P    Y+S++  +  H+ L+ A+ M + M+ +  FP+ +TY+ +
Sbjct: 347 AEKLYDEMIKR--SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTL 404

Query: 62  FRFLIKGRKLRDASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWK 114
            +   K +++ +   +F EM +   V +       I  +   RD   A  V+K
Sbjct: 405 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFK 457


>AT2G17140.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:7462820-7465740 FORWARD
           LENGTH=874
          Length = 874

 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 49/105 (46%)

Query: 13  KTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLR 72
           K     +   YNS++      N +     +MD+M  +G  P+  TYN   ++L +G K+ 
Sbjct: 587 KKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVE 646

Query: 73  DASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWKCEV 117
           DA+ +  EM++    P+  +    I  +    D  MA +V++  V
Sbjct: 647 DATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAV 691


>AT1G18900.3 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:6529778-6532541 FORWARD
           LENGTH=886
          Length = 886

 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 67/160 (41%)

Query: 18  PTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDASRV 77
           P    YN M+ L+    + + A K+  DM   G  PD +TY+++   L     L +A  V
Sbjct: 502 PNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAV 561

Query: 78  FSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWKCEVEHYRRDLEDTANXXXXXXXX 137
           F+EM +   +PD+P     + ++    +   A + ++  +    R    T N        
Sbjct: 562 FTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLR 621

Query: 138 XXXXPEAVKYAEDMIGRGIKLTSSTLSKLKHRLVKGRKEF 177
                EA +  ++M+  G++ +  T + L      GR + 
Sbjct: 622 VNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKL 661


>AT1G63130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23412854-23414746 FORWARD
           LENGTH=630
          Length = 630

 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 2/113 (1%)

Query: 2   AEFFWEVMLGRKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLM 61
           AE  ++ M+ R  ++ P    Y+S++  +  H+ L+ A+ M + M+ +  FP+ +TYN +
Sbjct: 345 AEKLYDEMIKR--SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 402

Query: 62  FRFLIKGRKLRDASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWK 114
            +   K +++ +   +F EM +   V +       I  +   R+   A  V+K
Sbjct: 403 IKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFK 455


>AT1G18900.2 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:6529778-6532360 FORWARD
           LENGTH=860
          Length = 860

 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 67/160 (41%)

Query: 18  PTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDASRV 77
           P    YN M+ L+    + + A K+  DM   G  PD +TY+++   L     L +A  V
Sbjct: 502 PNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAV 561

Query: 78  FSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWKCEVEHYRRDLEDTANXXXXXXXX 137
           F+EM +   +PD+P     + ++    +   A + ++  +    R    T N        
Sbjct: 562 FTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLR 621

Query: 138 XXXXPEAVKYAEDMIGRGIKLTSSTLSKLKHRLVKGRKEF 177
                EA +  ++M+  G++ +  T + L      GR + 
Sbjct: 622 VNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKL 661


>AT1G18900.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:6529778-6532360 FORWARD
           LENGTH=860
          Length = 860

 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 67/160 (41%)

Query: 18  PTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDASRV 77
           P    YN M+ L+    + + A K+  DM   G  PD +TY+++   L     L +A  V
Sbjct: 502 PNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAV 561

Query: 78  FSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWKCEVEHYRRDLEDTANXXXXXXXX 137
           F+EM +   +PD+P     + ++    +   A + ++  +    R    T N        
Sbjct: 562 FTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLR 621

Query: 138 XXXXPEAVKYAEDMIGRGIKLTSSTLSKLKHRLVKGRKEF 177
                EA +  ++M+  G++ +  T + L      GR + 
Sbjct: 622 VNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKL 661