Miyakogusa Predicted Gene

Lj6g3v0433940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0433940.1 Non Chatacterized Hit- tr|D8UAH5|D8UAH5_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,31.67,8e-16,5-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT,NULL;
5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT,N,CUFF.57829.1
         (299 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G39790.1 | Symbols:  | 5'-AMP-activated protein kinase-relate...   289   1e-78
AT1G27070.1 | Symbols:  | 5'-AMP-activated protein kinase-relate...    75   6e-14
AT5G03420.1 | Symbols:  | 5'-AMP-activated protein kinase-relate...    60   1e-09

>AT5G39790.1 | Symbols:  | 5'-AMP-activated protein kinase-related |
           chr5:15932884-15935121 REVERSE LENGTH=273
          Length = 273

 Score =  289 bits (740), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 136/199 (68%), Positives = 171/199 (85%), Gaps = 4/199 (2%)

Query: 101 TLAHPLTSEQIRALLADTERTKLTKKLSEANQQNRFLKRQLHVKEDALVKFKSDLAVMEL 160
           +L+ PLTS+++++LL DTER+KL KKLSEANQQNRFLKRQ H     +   K++LA+MEL
Sbjct: 79  SLSRPLTSDELKSLLIDTERSKLVKKLSEANQQNRFLKRQEH----EITNIKTELALMEL 134

Query: 161 EIQALARLAEEIAQSGIPERSRKINGKYIHSHLVARLEAVHEQLKEQIKDVGAAQSKQVS 220
           E+QAL +LAEEIA  GIP+ SRKI+GKYI SHL++RL+AV +++KEQIK V AAQSK+V 
Sbjct: 135 EVQALVKLAEEIANLGIPQGSRKISGKYIQSHLLSRLDAVQKKMKEQIKGVEAAQSKEVH 194

Query: 221 VFWVGMAESVQVMGTFDGWSQGEHLSPEYTGSYTRFSTTLMLRPGRYEIKFLVDGEWKLS 280
           VFW+GMAESVQVMG+FDGWSQ E LSPEY+  +T+FSTTL LRPGRYE+KFLVDGEW++S
Sbjct: 195 VFWIGMAESVQVMGSFDGWSQREDLSPEYSALFTKFSTTLFLRPGRYEMKFLVDGEWQIS 254

Query: 281 PEFPLTGEGLTKNNLLIVE 299
           PEFP +GEGL +NN+L+VE
Sbjct: 255 PEFPTSGEGLMENNVLVVE 273


>AT1G27070.1 | Symbols:  | 5'-AMP-activated protein kinase-related |
           chr1:9396945-9399225 REVERSE LENGTH=532
          Length = 532

 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 3/82 (3%)

Query: 217 KQVSVFWVGMAESVQVMGTFDGWSQGEHLSPEYTGSYTRFSTTLMLRPGRYEIKFLVDGE 276
           +  S+ W   A  V + G+FDGWS    +     G    FS +L L PG+YEIKF+VDG+
Sbjct: 453 RTASIVWPNSASEVLLTGSFDGWSTQRKMKKAENGV---FSLSLKLYPGKYEIKFIVDGQ 509

Query: 277 WKLSPEFPLTGEGLTKNNLLIV 298
           WK+ P  P+   G  +NNLLI+
Sbjct: 510 WKVDPLRPIVTSGGYENNLLII 531


>AT5G03420.1 | Symbols:  | 5'-AMP-activated protein kinase-related |
           chr5:845641-848705 FORWARD LENGTH=598
          Length = 598

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 3/86 (3%)

Query: 217 KQVSVFWVGMAESVQVMGTFDGWSQ--GEHL-SPEYTGSYTRFSTTLMLRPGRYEIKFLV 273
           ++V + + G   +V+V G+F+GW    G  L + +  G    +ST L L PG YEIKF+V
Sbjct: 511 QEVVIEYCGDGNAVEVTGSFNGWQHRVGMELQASKSIGKQKCWSTLLWLYPGTYEIKFIV 570

Query: 274 DGEWKLSPEFPLTGEGLTKNNLLIVE 299
           DG+W   P+      G   NN+L V+
Sbjct: 571 DGQWITDPQKDSVTRGHISNNILKVD 596