Miyakogusa Predicted Gene

Lj6g3v0410450.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0410450.1 tr|I0Z3L3|I0Z3L3_9CHLO TPR-like protein
OS=Coccomyxa subellipsoidea C-169 PE=4 SV=1,48,1e-17,KINESIN LIGHT
CHAIN,NULL; Tetratricopeptide repeats,Tetratricopeptide repeat;
TPR_12,NULL; TPR-like,,CUFF.57790.1
         (234 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G37590.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   241   4e-64

>AT5G37590.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:14927403-14932709 REVERSE
           LENGTH=551
          Length = 551

 Score =  241 bits (614), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 124/209 (59%), Positives = 150/209 (71%), Gaps = 18/209 (8%)

Query: 36  FSGKVRLSHWYQTRAYSCR------DPCLWIVVSGYAAVTLGISASTVFAEDVSTETSID 89
            SGK R+S  YQ      R      D  LWI++SG AA+ LG   +TV AED     S+ 
Sbjct: 36  LSGKPRIS--YQNDYGGHRTNLHLLDSRLWIILSGQAAI-LGFCGNTVLAED----ESMK 88

Query: 90  NDSGDELN-----GFRKIEDGSVVSNTHTAKWRIFTDKARDFFLQGKLDEAEKLFLSAVQ 144
           + SGD ++     G  KIEDGSVVSN HT+KWR+FTD  RD+F QGKL+ AE+LF SA+Q
Sbjct: 89  SKSGDNMDESGNTGLEKIEDGSVVSNIHTSKWRVFTDSGRDYFFQGKLEPAERLFGSAIQ 148

Query: 145 EAKEGFGKQDPHVASACNNLAEFYRIRKEFDKAEPLYLEAINILEESFGPDDIRVGAAAH 204
           EAKEGFG++DPHVASACNNLAE YR++KEFDKAEPLYLEA++ILEE +GPDD+RVGA  H
Sbjct: 149 EAKEGFGEKDPHVASACNNLAELYRVKKEFDKAEPLYLEAVSILEEFYGPDDVRVGATLH 208

Query: 205 NLGQFYLGLRKLEKARLTYERALKVCTYH 233
           NLGQ YL  RKLE+AR  YE   +V  Y+
Sbjct: 209 NLGQLYLVQRKLEEARACYELKGRVLGYN 237