Miyakogusa Predicted Gene

Lj6g3v0407330.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0407330.3 Non Chatacterized Hit- tr|I1KH61|I1KH61_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.35294
PE,72.88,0.000000000000008, ,CUFF.57791.3
         (57 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80410.1 | Symbols: EMB2753 | tetratricopeptide repeat (TPR)-...    61   1e-10
AT1G80410.2 | Symbols: EMB2753 | tetratricopeptide repeat (TPR)-...    61   2e-10

>AT1G80410.1 | Symbols: EMB2753 | tetratricopeptide repeat
           (TPR)-containing protein | chr1:30227963-30234832
           REVERSE LENGTH=897
          Length = 897

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 42/59 (71%), Gaps = 2/59 (3%)

Query: 1   MSTPMSESEKLIWSVLEAERSTISQLHEKTLFEANNSFLEKHKDSL--QNCFFIILFLL 57
           +S P +E+EKL W VLEAER +ISQL  K+L EAN  FL +H+DSL  +  +  +L++L
Sbjct: 718 ISAPTTEAEKLRWRVLEAERPSISQLQNKSLMEANKEFLGRHEDSLVHRAAYAEMLYIL 776


>AT1G80410.2 | Symbols: EMB2753 | tetratricopeptide repeat
           (TPR)-containing protein | chr1:30227779-30234832
           REVERSE LENGTH=911
          Length = 911

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 42/59 (71%), Gaps = 2/59 (3%)

Query: 1   MSTPMSESEKLIWSVLEAERSTISQLHEKTLFEANNSFLEKHKDSL--QNCFFIILFLL 57
           +S P +E+EKL W VLEAER +ISQL  K+L EAN  FL +H+DSL  +  +  +L++L
Sbjct: 718 ISAPTTEAEKLRWRVLEAERPSISQLQNKSLMEANKEFLGRHEDSLVHRAAYAEMLYIL 776