Miyakogusa Predicted Gene

Lj6g3v0392210.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0392210.1 Non Chatacterized Hit- tr|B8A1Y8|B8A1Y8_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,57.14,6e-16,
,CUFF.57760.1
         (201 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G65900.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   268   1e-72

>AT1G65900.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: 21 plant structures; EXPRESSED
           DURING: 13 growth stages; Has 306 Blast hits to 306
           proteins in 119 species: Archae - 19; Bacteria - 238;
           Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other
           Eukaryotes - 15 (source: NCBI BLink). |
           chr1:24516023-24518325 REVERSE LENGTH=408
          Length = 408

 Score =  268 bits (686), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 124/196 (63%), Positives = 159/196 (81%), Gaps = 5/196 (2%)

Query: 8   QKLAQFAAHFFTDLDTDQHPSCNFATFVPFAEDTPLQRAEWIKFMGAFANVEARANDVYS 67
           ++L+QFAAHF +D  TDQ  +CNFA F P +E TPLQRAEWIKF+GAF N+E +AN VY 
Sbjct: 150 EQLSQFAAHFISD--TDQPQTCNFANFFPLSEGTPLQRAEWIKFLGAFTNLETKANQVYD 207

Query: 68  TVKQNYLCLAEIAKTRT-SFKPTVAWMKYDT--GVWSFTKDGYQLKYVEDAGGANLDDSM 124
           +VK +Y CL+++A  +T SFKP VAWM YD   G+WSFTK+ ++LK+VEDAGG N+D S+
Sbjct: 208 SVKASYTCLSQMAANKTKSFKPIVAWMGYDQNGGMWSFTKESHKLKFVEDAGGENIDKSI 267

Query: 125 SKHTYNISDPDDLEELHAILCTVEVVIDETLTSDPVNYTLSTFIQNLNVEDRSCFSFLTN 184
           +K +YN+SDPDDLE LHAILCTV+ VIDETL+SDP NYT +TF+ N+NV+D SCF+FL N
Sbjct: 268 NKVSYNVSDPDDLEALHAILCTVDAVIDETLSSDPQNYTQTTFLANINVDDNSCFAFLAN 327

Query: 185 TSLWRYDKRIQNYTAL 200
            S+WRYDKR++N T L
Sbjct: 328 QSIWRYDKRVRNRTTL 343