Miyakogusa Predicted Gene

Lj6g3v0392200.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0392200.1 tr|Q94A98|Q94A98_ARATH At1g65900/F12P19_7
OS=Arabidopsis thaliana GN=At1g65900 PE=2 SV=1,62.5,3e-18,
,CUFF.57759.1
         (83 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G65900.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    98   1e-21

>AT1G65900.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: endomembrane
          system; EXPRESSED IN: 21 plant structures; EXPRESSED
          DURING: 13 growth stages; Has 306 Blast hits to 306
          proteins in 119 species: Archae - 19; Bacteria - 238;
          Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other
          Eukaryotes - 15 (source: NCBI BLink). |
          chr1:24516023-24518325 REVERSE LENGTH=408
          Length = 408

 Score = 97.8 bits (242), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/81 (62%), Positives = 58/81 (71%), Gaps = 2/81 (2%)

Query: 3  SATCYCSWLQPFFLLALVWFFNCGGVQGATPAVKVGNLSKVEDAVNFHIYYGQTFKVIKN 62
          S   Y SW  P  LL ++W        GA+  VKVG +SKVEDA NFHIYYGQTFKVIKN
Sbjct: 2  SPLPYSSW--PLILLLVLWCMVARLSNGASNNVKVGIISKVEDATNFHIYYGQTFKVIKN 59

Query: 63 AIDGQSYLLLQNNSRIASRTK 83
          AIDG+SYLL+QN SR+A RTK
Sbjct: 60 AIDGKSYLLIQNTSRMAVRTK 80