Miyakogusa Predicted Gene

Lj6g3v0389080.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0389080.2 Non Chatacterized Hit- tr|I1MZI6|I1MZI6_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,88.12,0,no
description,NULL; no description,Peptidase M24, structural domain;
SPT16,FACT complex subunit Spt,CUFF.57799.2
         (1055 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10710.1 | Symbols: SPT16 | global transcription factor C | c...  1359   0.0  
AT4G10670.1 | Symbols: GTC2 | GTC2 | chr4:6584727-6585758 FORWAR...   477   e-134

>AT4G10710.1 | Symbols: SPT16 | global transcription factor C |
           chr4:6602226-6605450 REVERSE LENGTH=1074
          Length = 1074

 Score = 1359 bits (3518), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 652/975 (66%), Positives = 771/975 (79%), Gaps = 20/975 (2%)

Query: 1   MADHRNGSD---------------SIDLNAFQTRMKTFYSHWDEHKTDLWGSCDAIAVAC 45
           MAD RNG+                SID+  F +R +  Y HW +H  DLWGS DA+A+A 
Sbjct: 1   MADSRNGNARAPPSGVPPKAGNTYSIDVKNFISRARALYEHWKKHSADLWGSADALAIAT 60

Query: 46  PPPSEDLRYLKSTALNLWLLGFEFPETIMVFTKKQVHILCSQKKASILESVKKPAKEAVG 105
           PP S+DLRYLKS+ALN+WLLG+EFP+TIMVFTKKQ+H LCS+ KAS+LE VKKPA + + 
Sbjct: 61  PPASDDLRYLKSSALNIWLLGYEFPDTIMVFTKKQIHFLCSRNKASLLEVVKKPAHDELK 120

Query: 106 AEIVLHVKPKNDDGTTLMDSIFHAIRTQSKADGGDVPTVGYISREAAEGKLLETWAEKLK 165
            ++++HVKPK DDGT LMD+IF AIR  S+ DG D   VG+I+REA EGKLLETW E+LK
Sbjct: 121 LDVIMHVKPKGDDGTGLMDAIFRAIRDLSRGDGNDSQVVGHIAREAPEGKLLETWTERLK 180

Query: 166 SSKFNLTDVANGLSMLFAAKNNEELTSIKRAAYLTTSVMKNFVVSKLENVIDEEKKVSHS 225
           ++ F   D+  GLS LFA K++ E+ S+K+AAYL  SVMKN VV  LE+ IDEEK V+HS
Sbjct: 181 NANFQFVDITGGLSDLFAVKDDTEVMSVKKAAYLAYSVMKNVVVPNLESAIDEEKDVTHS 240

Query: 226 TLMEETEKVILEPSKANCKLKAENVDICYPPIFQSGGEFDLRPSAVSNDDLLYYDSASVI 285
            LM+ TEK ILEP+KA+ KLK ENVDICYPPIFQSGG+FDL+PSA SND+LL YD AS+I
Sbjct: 241 ALMDLTEKAILEPTKASVKLKPENVDICYPPIFQSGGKFDLKPSAASNDELLTYDPASII 300

Query: 286 ICAVGARYKSYCSNIARTFLIDAISLQSKAYEVLLKAHEAVIGSLKPGNKLSSAYQAAVS 345
           ICAVGARY SYCSN+ART+LIDA SLQSKAYEVLLKAHEA I +L+ G K+++ YQAA+S
Sbjct: 301 ICAVGARYNSYCSNVARTYLIDATSLQSKAYEVLLKAHEAAIDALRSGRKINTVYQAALS 360

Query: 346 VVEKEAPDLLPFLTKSAGTGIGIEFRESSLNLNAKNEQIVKEGMVFNVSLGFQXXX-XXX 404
           VVEK AP+ +  LTKSAGTGIG+EFRES LN+NAKN+++++  M FNVSLGFQ       
Sbjct: 361 VVEKNAPEFVDKLTKSAGTGIGLEFRESGLNINAKNDKVLRPKMAFNVSLGFQNLECESE 420

Query: 405 XXXXXXVFSLLLADTVIINKDKTEVVTSMSSKALKDVAYSFNXXXXXXXKPSAKSDANGA 464
                  FSLLLADTV++   K E++T   SK++KDVAYSF        KP  K+  +G+
Sbjct: 421 SRSKNKKFSLLLADTVLVTDQKPELLTK-CSKSVKDVAYSFK-EDEEEEKPRKKARTSGS 478

Query: 465 EHLMSKTTLRSDNHEVSKEELRRQHQAELARQKNEETXXXXXXXXXXXXXXXSSVKNSSE 524
           E+ ++KT LRSD+H VSKEELR+QHQAELARQKNEET               S+ K S++
Sbjct: 479 ENYITKTALRSDDHVVSKEELRKQHQAELARQKNEETARRLAGDSSGAGDSRSTAKTSAD 538

Query: 525 LVAYKNINDLPPPREMMIQIDQKNEAVLLPINGSMVPFHVAFIRTINSQQDTNRKCIIRI 584
           +VAYKN+ND+ P +E+MIQ+D +NEAVLLPI GS+VPFHVA IRT++  QDTNR C IRI
Sbjct: 539 VVAYKNVNDM-PHKELMIQVDTRNEAVLLPIYGSLVPFHVATIRTVSGNQDTNRNCYIRI 597

Query: 585 IFNVPGTAFNPHDSNSMKFQGSIYLKEASFRSKDPRHSSEVVQSIKTLRRQVVARESERA 644
           IFNVPGT FNPHDSNS+K QG+IYLKE SFR+KD RHSSEV Q IKTLRRQV+ARESERA
Sbjct: 598 IFNVPGTPFNPHDSNSLKNQGAIYLKEVSFRTKDSRHSSEVTQQIKTLRRQVMARESERA 657

Query: 645 ERATLVTQEKLQLANNKFKPIRLSDLWIRPVFGGRGRKLPGTLEGHANGFRYSTTRQDER 704
           ERATLVTQEKLQLA NKFKP+RLS+LWIRP F GR +K+PGTLE HANGFRYSTTR DER
Sbjct: 658 ERATLVTQEKLQLAGNKFKPLRLSELWIRPPFSGR-KKIPGTLEAHANGFRYSTTRPDER 716

Query: 705 VDIMFANIKHAFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDMVQNIGGGKR 764
           VD++FANIKHAFFQPAE EMITLLHFHLHNHIMVG KKTKDVQFYVEVMD+VQ++GGG+R
Sbjct: 717 VDVLFANIKHAFFQPAEKEMITLLHFHLHNHIMVGTKKTKDVQFYVEVMDVVQSLGGGRR 776

Query: 765 SAYXXXXXXXXXXXXXXKNKINVEFQTFVNRVNDLWGQPQFNGLDLEFDQPLRELGFPGV 824
           SAY              KNKIN++F  F NRVND+W  PQF  LDLEFDQPLRELGF GV
Sbjct: 777 SAYDPDEIDEEQRERDRKNKINMDFNHFANRVNDMWQLPQFASLDLEFDQPLRELGFHGV 836

Query: 825 PHKSSVFIVPTSACLVELIEIPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVL 884
           PHK+S FI+PTS+CLVELIE PFLVV+LSEIEIVNLERVG GQKNFDM I+FKDFK+DVL
Sbjct: 837 PHKTSAFIIPTSSCLVELIEYPFLVVSLSEIEIVNLERVGFGQKNFDMAIIFKDFKKDVL 896

Query: 885 RIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQSFIEGGGWEFLNLEA 944
           R+DS+P++SL+GIKEWLDTTDIKYYES+LNLNWRQILKTITDDPQSFI+ GGWEFLNL+ 
Sbjct: 897 RVDSVPTSSLEGIKEWLDTTDIKYYESKLNLNWRQILKTITDDPQSFIDDGGWEFLNLDG 956

Query: 945 TXXXXXXXXXXXKGY 959
           +           KGY
Sbjct: 957 SDSESGGSEESDKGY 971


>AT4G10670.1 | Symbols: GTC2 | GTC2 | chr4:6584727-6585758 FORWARD
           LENGTH=343
          Length = 343

 Score =  477 bits (1228), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 234/353 (66%), Positives = 277/353 (78%), Gaps = 11/353 (3%)

Query: 541 MIQIDQKNEAVLLPINGSMVPFHVAFIRTINSQQDTNRKCIIRIIFNVPGTAFNPHDSNS 600
           MI +D K++ VLLPI G MVPF+V  IRT+   Q+T     IR+IFNVPGT  NP+DS  
Sbjct: 1   MITVDHKSDTVLLPIYGRMVPFNVTTIRTVLGNQNT-----IRVIFNVPGTPLNPNDS-- 53

Query: 601 MKFQGSIYLKEASFRSKDPRHSSEVVQSIKTLRRQVVARESERAERATLVTQEKLQLANN 660
           +K + +IYLKE SFR+KD RHSS+VVQ +K+LRR+V+ARESERAER +LV QEKLQ+  N
Sbjct: 54  LKNKDAIYLKEVSFRTKDSRHSSDVVQQVKSLRRKVMARESERAERTSLVNQEKLQIVRN 113

Query: 661 KFKPIRLSDLWIRPVFGGRGRKLPGTLEGHANGFRYSTTRQDERVDIMFANIKHAFFQPA 720
             KP+ LS+LWIRP F GR +K  GTLE H NGFRYSTT  +ERVD++FANIKHAFFQPA
Sbjct: 114 NSKPLSLSNLWIRPPFSGR-KKNRGTLEAHVNGFRYSTT--NERVDVLFANIKHAFFQPA 170

Query: 721 ENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDMVQNIGGGKRS-AYXXXXXXXXXXXX 779
           E EM TLLHFHLHNHIMVG KKTKDVQFYVEVMD+VQ++GG +RS AY            
Sbjct: 171 EKEMTTLLHFHLHNHIMVGTKKTKDVQFYVEVMDVVQSLGGRRRSSAYDADEIVEEQRER 230

Query: 780 XXKNKINVEFQTFVNRVNDLWGQPQFNGLDLEFDQPLRELGFPGVPHKSSVFIVPTSACL 839
             KNKIN++F  F N+VND+W  PQF  L LEFDQPLRE GF GVPHK+S FI+PTS+CL
Sbjct: 231 DRKNKINMDFNHFANQVNDMWQLPQFASLSLEFDQPLREFGFNGVPHKTSTFIIPTSSCL 290

Query: 840 VELIEIPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPST 892
           VEL E PFLVV LSEIEIVNLERVG GQK+FDM I+FKD K+DVLR+DS+P++
Sbjct: 291 VELTESPFLVVCLSEIEIVNLERVGFGQKSFDMAIIFKDLKKDVLRVDSVPTS 343