Miyakogusa Predicted Gene

Lj6g3v0389080.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0389080.1 Non Chatacterized Hit- tr|F6I4V8|F6I4V8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,80.47,0,TRANSCRIPTION REGULATION,NULL; CDC68 RELATED,NULL;
seg,NULL,CUFF.57799.1
         (169 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10710.1 | Symbols: SPT16 | global transcription factor C | c...   140   5e-34

>AT4G10710.1 | Symbols: SPT16 | global transcription factor C |
           chr4:6602226-6605450 REVERSE LENGTH=1074
          Length = 1074

 Score =  140 bits (352), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 62/88 (70%), Positives = 73/88 (82%)

Query: 1   MTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPKSF 60
           M I+FKDFK+DVLR+DS+P++SL+GIKEWLDTTDIKYYES+LNLNWRQILKTITDDP+SF
Sbjct: 884 MAIIFKDFKKDVLRVDSVPTSSLEGIKEWLDTTDIKYYESKLNLNWRQILKTITDDPQSF 943

Query: 61  IETGGWEFLNLEAXXXXXXXXXXXXKGY 88
           I+ GGWEFLNL+             KGY
Sbjct: 944 IDDGGWEFLNLDGSDSESGGSEESDKGY 971