Miyakogusa Predicted Gene
- Lj6g3v0388050.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0388050.1 Non Chatacterized Hit- tr|I1MZI7|I1MZI7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.41970
PE,91.3,0,TRANSCRIPTION REGULATION,NULL; CDC68 RELATED,NULL;
seg,NULL,CUFF.57800.1
(183 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G10710.1 | Symbols: SPT16 | global transcription factor C | c... 141 3e-34
>AT4G10710.1 | Symbols: SPT16 | global transcription factor C |
chr4:6602226-6605450 REVERSE LENGTH=1074
Length = 1074
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 73/88 (82%)
Query: 1 MTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPKSF 60
M I+FKDFK+DVLR+DS+P++SL+GIKEWLDTTDIKYYES+LNLNWRQILKTITDDP+SF
Sbjct: 884 MAIIFKDFKKDVLRVDSVPTSSLEGIKEWLDTTDIKYYESKLNLNWRQILKTITDDPQSF 943
Query: 61 IETGGWEFLNLEAXXXXXXXXXXXXKGY 88
I+ GGWEFLNL+ KGY
Sbjct: 944 IDDGGWEFLNLDGSDSESGGSEESDKGY 971
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 27/30 (90%)
Query: 140 ASNADREKGHEYDSEEDRQRRKVKAFGKSR 169
A+NADRE G E DSEE+R+RRK+KAFGKSR
Sbjct: 1022 ATNADREHGVESDSEEERKRRKMKAFGKSR 1051